Wall clock time and date at job start Mon Mar 30 2020 04:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39869 * 125.89994 * 2 1 4 4 C 1.35319 * 107.92199 * 179.86733 * 3 2 1 5 5 C 1.50698 * 126.12548 * 180.14715 * 4 3 2 6 6 N 1.46506 * 109.46992 * 95.29120 * 5 4 3 7 7 C 1.34773 * 119.99784 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00298 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.99773 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.47096 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47069 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47091 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99857 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00045 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99769 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47074 * 60.00409 * 16 14 12 18 18 H 1.48498 * 109.46962 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47663 * 299.99982 * 16 14 12 20 20 N 1.34949 * 107.74072 * 0.38975 * 4 3 2 21 21 C 1.46499 * 126.03244 * 179.74834 * 20 4 3 22 22 N 1.30834 * 125.89652 * 180.31122 * 2 1 3 23 23 H 1.09002 * 109.47152 * 269.71476 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.71576 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.71557 * 1 2 3 26 26 H 1.08001 * 126.03471 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.46903 * 215.28425 * 5 4 3 28 28 H 1.08994 * 109.47583 * 335.28793 * 5 4 3 29 29 H 0.96999 * 119.99475 * 359.97438 * 6 5 4 30 30 H 1.09004 * 109.47570 * 300.00289 * 9 7 6 31 31 H 1.09001 * 109.47197 * 60.00377 * 9 7 6 32 32 H 1.08996 * 109.46999 * 300.00090 * 10 9 7 33 33 H 1.09001 * 109.46935 * 60.00039 * 10 9 7 34 34 H 1.08996 * 109.47210 * 299.99870 * 11 10 9 35 35 H 1.09001 * 109.47284 * 60.00163 * 11 10 9 36 36 H 0.97002 * 120.00135 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.47808 * 269.98164 * 21 20 4 38 38 H 1.09003 * 109.47286 * 29.98436 * 21 20 4 39 39 H 1.09002 * 109.46991 * 149.97561 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 0.0030 5 6 4.8351 1.5989 0.0072 6 7 5.3017 1.7805 1.3840 7 6 6.3880 2.5384 1.6329 8 8 6.9791 3.0704 0.7172 9 6 6.8676 2.7257 3.0492 10 6 8.1071 3.6227 3.0535 11 6 8.5944 3.8123 4.4914 12 6 9.8157 4.6953 4.4956 13 1 10.2050 5.0828 3.5657 14 6 10.4359 5.0084 5.6865 15 7 9.9615 4.5370 6.8188 16 14 11.9501 6.1023 5.6915 17 1 11.6079 7.4239 5.1069 18 1 12.4230 6.2865 7.0871 19 1 13.0226 5.4669 4.8847 20 7 3.6087 -0.6341 -0.0039 21 6 4.7899 -1.5008 -0.0089 22 7 2.2741 -1.0598 -0.0058 23 1 -0.3633 -0.0051 1.0277 24 1 -0.3633 -0.8874 -0.5182 25 1 -0.3633 0.8926 -0.5094 26 1 1.9923 2.1598 -0.0004 27 1 5.6228 1.1330 -0.5848 28 1 4.5833 2.5686 -0.4220 29 1 4.8287 1.3554 2.1164 30 1 6.0799 3.1921 3.6409 31 1 7.1189 1.7560 3.4789 32 1 8.8949 3.1566 2.4617 33 1 7.8554 4.5923 2.6239 34 1 7.8068 4.2782 5.0835 35 1 8.8463 2.8425 4.9206 36 1 10.3976 4.7575 7.6567 37 1 5.0823 -1.7108 -1.0376 38 1 5.6097 -1.0007 0.5069 39 1 4.5567 -2.4357 0.5007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594023432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:12 Heat of formation + Delta-G solvation = 16.274442 kcal Electronic energy + Delta-G solvation = -19006.175384 eV Core-core repulsion = 15949.781647 eV Total energy + Delta-G solvation = -3056.393737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63917 -39.47103 -35.31392 -34.19986 -33.99293 -32.10255 -31.09609 -29.76909 -28.17246 -26.26416 -25.61226 -23.60520 -20.79765 -20.71802 -20.01861 -19.55274 -17.32148 -16.55834 -16.29323 -15.92499 -15.61131 -15.35579 -14.52088 -14.44453 -14.01259 -13.83360 -13.66259 -13.44796 -13.19864 -12.78065 -12.57943 -12.45423 -12.27713 -12.14291 -11.81206 -11.35789 -10.85447 -10.79087 -10.63973 -10.56041 -9.88971 -9.69523 -9.46871 -9.26049 -9.18688 -9.04407 -8.80715 -8.32344 -5.98104 -3.99693 1.40796 2.16796 2.40916 2.82937 3.35051 3.36237 3.39778 3.43717 4.11129 4.18448 4.48827 4.65489 4.84198 4.87197 5.03073 5.04735 5.12254 5.31369 5.35529 5.37923 5.42285 5.52060 5.59775 5.67815 5.69055 5.89342 6.20392 6.28468 6.37846 6.65356 6.70530 6.90927 7.14436 7.42107 7.46667 7.69867 7.82616 8.02349 8.33857 8.46162 9.07222 9.64286 11.13390 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.043159 B = 0.002739 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.607852 B =10219.843340 C =10302.090722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.068 3.932 3 C -0.249 4.249 4 C 0.067 3.933 5 C 0.184 3.816 6 N -0.739 5.739 7 C 0.515 3.485 8 O -0.535 6.535 9 C -0.138 4.138 10 C -0.095 4.095 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.365 5.365 21 C 0.097 3.903 22 N -0.291 5.291 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.402 0.598 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 -11.369 -13.034 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.279 4.279 4 C -0.060 4.060 5 C 0.059 3.941 6 N -0.394 5.394 7 C 0.303 3.697 8 O -0.410 6.410 9 C -0.178 4.178 10 C -0.133 4.133 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.148 5.148 21 C -0.044 4.044 22 N -0.114 5.114 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.168 0.832 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.236 0.764 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.746 -12.342 -13.532 24.817 hybrid contribution 0.626 1.142 0.443 1.376 sum -16.120 -11.200 -13.089 23.593 Atomic orbital electron populations 1.20182 0.86503 1.03302 1.03072 1.22351 0.97061 0.90651 0.99660 1.21230 0.90733 1.00090 1.15866 1.21055 0.96879 0.84629 1.03463 1.19697 0.90937 0.98073 0.85390 1.46206 1.31402 1.53757 1.07987 1.21325 0.78709 0.76843 0.92787 1.90693 1.55933 1.47378 1.46998 1.21857 1.01452 1.03172 0.91276 1.21456 0.93422 0.97521 1.00900 1.19129 0.95975 0.96912 0.89645 1.21233 1.11676 1.30026 0.92793 0.92618 1.25019 0.97546 0.96274 0.95664 1.69949 1.40777 1.45348 0.97687 0.86648 0.83286 0.81171 0.76851 1.20211 1.21335 1.20229 1.48461 1.05608 1.04117 1.56589 1.21927 0.83815 0.95064 1.03642 1.77335 0.86212 1.22715 1.25169 0.90432 0.90980 0.90332 0.83232 0.90428 0.88852 0.76412 0.89191 0.89335 0.92694 0.92624 0.96585 0.96632 0.92994 0.90531 0.89170 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.01 0.38 -0.10 16 2 C 0.07 0.70 7.22 -82.41 -0.59 0.10 16 3 C -0.25 -2.46 10.65 -40.01 -0.43 -2.89 16 4 C 0.07 0.68 6.30 -82.26 -0.52 0.16 16 5 C 0.18 1.88 5.61 -5.19 -0.03 1.85 16 6 N -0.74 -8.22 5.55 -61.47 -0.34 -8.56 16 7 C 0.52 7.79 7.83 -10.99 -0.09 7.71 16 8 O -0.53 -10.15 15.98 5.55 0.09 -10.06 16 9 C -0.14 -2.19 5.70 -27.88 -0.16 -2.35 16 10 C -0.09 -2.01 4.44 -26.72 -0.12 -2.13 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 N -0.37 -3.77 4.01 -63.89 -0.26 -4.03 16 21 C 0.10 0.70 11.16 59.85 0.67 1.37 16 22 N -0.29 -3.42 12.58 33.67 0.42 -2.99 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.08 0.79 7.98 -51.93 -0.41 0.38 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.40 3.77 8.46 -40.82 -0.35 3.42 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.59 7.78 -51.93 -0.40 0.19 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -34.68 337.10 -6.92 -41.60 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.20 Total: -2.02 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.44 Total: -9.65 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.56 Total: -41.89 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.68 -6.92 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594023432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.879 kcal (2) G-P(sol) polarization free energy of solvation -34.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds