Wall clock time and date at job start Mon Mar 30 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46989 * 2 1 4 4 N 1.46499 * 109.47218 * 240.00020 * 2 1 3 5 5 C 1.34776 * 119.99685 * 85.00041 * 4 2 1 6 6 O 1.21273 * 120.00382 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99555 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.46900 * 179.97438 * 7 5 4 9 9 C 1.53008 * 109.47268 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.47138 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00310 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99697 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00199 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99561 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47202 * 60.00363 * 14 12 10 16 16 H 1.48504 * 109.46909 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47370 * 299.99534 * 14 12 10 18 18 C 1.50706 * 109.47268 * 120.00002 * 2 1 3 19 19 C 1.39874 * 125.89775 * 275.00099 * 18 2 1 20 20 C 1.35307 * 107.91884 * 179.97438 * 19 18 2 21 21 N 1.34947 * 107.74824 * 359.97438 * 20 19 18 22 22 C 1.46506 * 126.03702 * 179.97438 * 21 20 19 23 23 N 1.30836 * 125.90118 * 95.30385 * 18 2 1 24 24 H 1.08994 * 109.46967 * 59.99880 * 1 2 3 25 25 H 1.09005 * 109.46989 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47061 * 299.99614 * 1 2 3 27 27 H 0.96997 * 120.00009 * 264.99530 * 4 2 1 28 28 H 1.09003 * 109.47101 * 299.99475 * 7 5 4 29 29 H 1.08999 * 109.47492 * 59.99609 * 7 5 4 30 30 H 1.08996 * 109.47216 * 299.99797 * 8 7 5 31 31 H 1.09006 * 109.47378 * 59.99955 * 8 7 5 32 32 H 1.08996 * 109.47061 * 300.00167 * 9 8 7 33 33 H 1.08999 * 109.47083 * 59.99708 * 9 8 7 34 34 H 0.96989 * 120.00147 * 179.97438 * 13 12 10 35 35 H 1.07999 * 126.03656 * 359.97438 * 19 18 2 36 36 H 1.08006 * 126.12670 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.46892 * 90.00531 * 22 21 20 38 38 H 1.09000 * 109.46803 * 209.99704 * 22 21 20 39 39 H 1.09000 * 109.47214 * 330.00497 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7288 -3.5877 8 6 2.6999 0.2542 -4.7590 9 6 3.2100 -0.4670 -6.0083 10 6 3.2608 0.5014 -7.1618 11 1 2.9590 1.5284 -7.0184 12 6 3.6915 0.0759 -8.4006 13 7 4.0585 -1.1748 -8.5754 14 14 3.7538 1.2762 -9.8306 15 1 4.6702 2.3961 -9.4973 16 1 4.2478 0.5759 -11.0434 17 1 2.3924 1.8103 -10.0882 18 6 2.0324 -0.7104 1.2305 19 6 2.2127 -0.1360 2.4930 20 6 2.6755 -1.0971 3.3254 21 7 2.7837 -2.2393 2.6151 22 6 3.2484 -3.5313 3.1262 23 7 2.3805 -1.9697 1.3010 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.2491 -1.6317 -1.1526 28 1 3.6481 -1.1213 -3.3986 29 1 1.9760 -1.5506 -3.8325 30 1 1.7006 0.6463 -4.9480 31 1 3.3726 1.0763 -4.5144 32 1 4.2093 -0.8588 -5.8190 33 1 2.5377 -1.2893 -6.2530 34 1 4.3612 -1.4741 -9.4469 35 1 2.0170 0.8929 2.7567 36 1 2.9146 -0.9725 4.3713 37 1 2.3984 -4.0995 3.5041 38 1 3.7291 -4.0885 2.3220 39 1 3.9633 -3.3673 3.9325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594041161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:23 Heat of formation + Delta-G solvation = -3.183894 kcal Electronic energy + Delta-G solvation = -19152.297151 eV Core-core repulsion = 16095.059637 eV Total energy + Delta-G solvation = -3057.237514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.22689 -40.74059 -36.98414 -36.03480 -34.11574 -33.82632 -31.70455 -31.02559 -29.48138 -27.50025 -25.98797 -24.27583 -22.46175 -22.00229 -21.03118 -20.65186 -18.68028 -18.12423 -17.52343 -16.97738 -16.68218 -16.47340 -16.36566 -15.22963 -15.16807 -14.81490 -14.56050 -14.29629 -14.16964 -13.88456 -13.74734 -13.34913 -13.27622 -13.06311 -12.92691 -12.60226 -12.49774 -12.41610 -12.31620 -11.70304 -11.54496 -11.45387 -11.27070 -10.76135 -10.53538 -10.36254 -10.09394 -9.50155 -8.19318 -6.29594 0.91979 1.39962 1.43461 1.51425 1.60669 1.65107 1.76383 2.20840 2.42953 3.13431 3.41257 3.88703 3.89196 4.13846 4.21887 4.24122 4.25494 4.30409 4.46747 4.65090 4.71828 4.72844 4.78464 4.86395 4.89890 4.97471 5.04730 5.11447 5.18819 5.20876 5.46931 5.55490 5.59984 5.76144 5.87504 6.16641 6.28041 6.53322 6.69656 6.85807 7.25358 7.38937 8.92274 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038336 B = 0.002944 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.217341 B = 9508.748623 C = 9976.185292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.224 3.776 3 H 0.093 0.907 4 N -0.716 5.716 5 C 0.520 3.480 6 O -0.577 6.577 7 C -0.131 4.131 8 C -0.081 4.081 9 C 0.026 3.974 10 C -0.548 4.548 11 H 0.053 0.947 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.963 3.037 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.268 1.268 18 C 0.054 3.946 19 C -0.283 4.283 20 C 0.067 3.933 21 N -0.378 5.378 22 C 0.092 3.908 23 N -0.326 5.326 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.413 0.587 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.042 0.958 32 H -0.001 1.001 33 H 0.000 1.000 34 H 0.265 0.735 35 H 0.163 0.837 36 H 0.218 0.782 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 -4.519 29.368 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.117 3.883 3 H 0.111 0.889 4 N -0.369 5.369 5 C 0.308 3.692 6 O -0.456 6.456 7 C -0.171 4.171 8 C -0.119 4.119 9 C -0.011 4.011 10 C -0.586 4.586 11 H 0.071 0.929 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.788 3.212 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.193 1.193 18 C -0.112 4.112 19 C -0.313 4.313 20 C -0.079 4.079 21 N -0.161 5.161 22 C -0.048 4.048 23 N -0.150 5.150 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.249 0.751 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.181 0.819 36 H 0.235 0.765 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.308 -5.075 28.659 29.292 hybrid contribution 0.157 0.673 -0.530 0.871 sum -3.151 -4.402 28.129 28.645 Atomic orbital electron populations 1.22053 0.92937 1.02565 1.03082 1.19243 0.94760 0.95350 0.78945 0.88900 1.46011 1.67342 1.14745 1.08790 1.20999 0.76261 0.86834 0.85094 1.90648 1.51620 1.17748 1.85629 1.21680 1.03810 0.99869 0.91723 1.21154 1.00103 0.97084 0.93532 1.19018 0.94961 0.95007 0.92140 1.21677 1.43915 0.97026 0.96012 0.92886 1.25938 0.94760 0.97114 1.01783 1.70064 1.45310 1.17164 1.24556 0.85530 0.78895 0.78829 0.77982 1.19361 1.20362 1.19340 1.22281 1.00213 0.92245 0.96427 1.21631 1.14812 1.02622 0.92224 1.23192 0.99324 0.85104 1.00287 1.48861 1.50278 1.10766 1.06170 1.22213 1.01465 0.80191 1.00882 1.77114 1.22194 1.16571 0.99111 0.92759 0.92233 0.89407 0.75084 0.87877 0.87586 0.93791 0.93948 0.98251 0.98150 0.92653 0.81909 0.76544 0.89446 0.89697 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.47 71.98 0.68 -2.59 16 2 C 0.22 5.56 3.05 44.25 0.14 5.69 16 3 H 0.09 2.53 7.58 -2.38 -0.02 2.51 16 4 N -0.72 -19.75 5.07 -446.09 -2.26 -22.01 16 5 C 0.52 17.95 7.79 87.66 0.68 18.63 16 6 O -0.58 -24.09 15.64 -3.01 -0.05 -24.14 16 7 C -0.13 -4.63 5.70 29.85 0.17 -4.46 16 8 C -0.08 -3.70 4.44 30.59 0.14 -3.56 16 9 C 0.03 1.42 4.97 29.85 0.15 1.56 16 10 C -0.55 -33.01 9.11 25.60 0.23 -32.78 16 11 H 0.05 3.14 7.74 -2.91 -0.02 3.11 16 12 C 0.00 0.11 5.46 84.66 0.46 0.57 16 13 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 14 Si 0.96 45.96 29.54 68.60 2.03 47.99 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 C 0.05 1.21 6.19 43.11 0.27 1.48 16 19 C -0.28 -4.87 10.74 21.99 0.24 -4.63 16 20 C 0.07 0.84 11.49 83.54 0.96 1.80 16 21 N -0.38 -5.95 4.01 -369.55 -1.48 -7.44 16 22 C 0.09 0.64 11.47 127.77 1.47 2.10 16 23 N -0.33 -7.46 11.81 -47.38 -0.56 -8.02 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.41 10.23 8.00 -92.71 -0.74 9.49 16 28 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.04 2.08 8.10 -2.39 -0.02 2.06 16 31 H 0.04 2.02 8.10 -2.38 -0.02 2.00 16 32 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.26 15.36 8.31 -92.72 -0.77 14.59 16 35 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.22 0.60 8.06 -2.91 -0.02 0.58 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -78.10 335.93 3.83 -74.27 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.29 Total: 12.93 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 5.58 Total: -16.18 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -4.02 Total: -94.87 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -78.10 3.83 -74.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594041161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.084 kcal (2) G-P(sol) polarization free energy of solvation -78.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds