Wall clock time and date at job start Mon Mar 30 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 5 5 C 1.34774 * 119.99544 * 274.99692 * 4 2 1 6 6 O 1.21279 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00275 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99908 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99794 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99992 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47123 * 90.00328 * 14 12 10 16 16 H 1.48506 * 109.46940 * 210.00450 * 14 12 10 17 17 H 1.48509 * 109.47046 * 330.00079 * 14 12 10 18 18 C 1.50705 * 109.46565 * 240.00494 * 2 1 3 19 19 C 1.39878 * 125.89618 * 84.71401 * 18 2 1 20 20 C 1.35312 * 107.91580 * 179.85864 * 19 18 2 21 21 N 1.34943 * 107.75113 * 0.39953 * 20 19 18 22 22 C 1.46496 * 126.04152 * 179.74842 * 21 20 19 23 23 N 1.30832 * 125.90089 * 265.02080 * 18 2 1 24 24 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 26 26 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 27 27 H 0.96994 * 120.00700 * 94.99812 * 4 2 1 28 28 H 1.09001 * 109.46953 * 299.99667 * 7 5 4 29 29 H 1.09000 * 109.47318 * 59.99264 * 7 5 4 30 30 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 31 31 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 32 32 H 1.08992 * 109.47554 * 299.99696 * 9 8 7 33 33 H 1.08996 * 109.47261 * 60.00229 * 9 8 7 34 34 H 0.96996 * 119.99562 * 180.02562 * 13 12 10 35 35 H 1.07996 * 126.03610 * 359.97438 * 19 18 2 36 36 H 1.08007 * 126.12107 * 180.14513 * 20 19 18 37 37 H 1.08998 * 109.47296 * 270.02556 * 22 21 20 38 38 H 1.08998 * 109.47083 * 30.02316 * 22 21 20 39 39 H 1.08997 * 109.47175 * 150.01900 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1472 -0.0185 2.3570 6 8 1.8583 1.1581 2.4118 7 6 2.6501 -0.7289 3.5873 8 6 2.7009 0.2539 4.7588 9 6 3.2109 -0.4676 6.0079 10 6 3.2616 0.5007 7.1616 11 1 2.9598 1.5277 7.0184 12 6 3.6933 0.0753 8.4001 13 7 3.7370 0.9201 9.4071 14 14 4.2146 -1.7013 8.6481 15 1 5.6676 -1.8339 8.3717 16 1 3.9382 -2.1072 10.0495 17 1 3.4524 -2.5750 7.7201 18 6 2.0322 -0.7103 -1.2306 19 6 2.2071 -0.1371 -2.4945 20 6 2.6753 -1.0968 -3.3256 21 7 2.7841 -2.2390 -2.6153 22 6 3.2485 -3.5309 -3.1265 23 7 2.3746 -1.9710 -1.3027 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 2.2491 -1.6319 1.1524 28 1 1.9779 -1.5512 3.8323 29 1 3.6494 -1.1208 3.3976 30 1 3.3729 1.0764 4.5140 31 1 1.7014 0.6453 4.9483 32 1 2.5387 -1.2899 6.2525 33 1 4.2103 -0.8592 5.8186 34 1 4.0410 0.6209 10.2782 35 1 2.0060 0.8903 -2.7595 36 1 2.9147 -0.9720 -4.3714 37 1 2.3984 -4.0990 -3.5043 38 1 3.9631 -3.3670 -3.9330 39 1 3.7295 -4.0881 -2.3226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594041165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:25 Heat of formation + Delta-G solvation = 25.074743 kcal Electronic energy + Delta-G solvation = -19202.793331 eV Core-core repulsion = 16146.781204 eV Total energy + Delta-G solvation = -3056.012128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55920 -39.47276 -35.91412 -34.19439 -33.19465 -32.05725 -30.68323 -30.37623 -28.13165 -26.94039 -24.29003 -22.96979 -21.60494 -20.34818 -19.84954 -19.64890 -17.56388 -16.70470 -16.37217 -15.94556 -15.84110 -15.28450 -14.41761 -14.17334 -14.03190 -13.84107 -13.47122 -13.31420 -13.12395 -12.86336 -12.63475 -12.48351 -12.15356 -11.87414 -11.57248 -11.38595 -11.00253 -10.90229 -10.72555 -9.93281 -9.77671 -9.64643 -9.62385 -9.33350 -9.07011 -9.03754 -8.84799 -8.46071 -5.95972 -3.93245 1.54232 2.14150 2.43682 2.96813 3.31876 3.35641 3.42495 3.46148 4.07220 4.43447 4.51809 4.54263 4.71869 4.97230 5.01923 5.12888 5.22033 5.32381 5.37562 5.43353 5.56872 5.62130 5.67120 5.69931 5.86465 6.06772 6.20979 6.30682 6.52972 6.64653 6.65283 6.77430 7.00108 7.37874 7.45266 7.53039 7.68959 7.88379 8.49960 8.64826 9.11250 9.66394 11.17818 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.003185 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.332775 B = 8788.130421 C = 9406.680086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.225 3.775 3 H 0.106 0.894 4 N -0.732 5.732 5 C 0.515 3.485 6 O -0.536 6.536 7 C -0.141 4.141 8 C -0.087 4.087 9 C -0.015 4.015 10 C -0.517 4.517 11 H 0.073 0.927 12 C 0.064 3.936 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.265 1.265 18 C 0.071 3.929 19 C -0.262 4.262 20 C 0.054 3.946 21 N -0.376 5.376 22 C 0.101 3.899 23 N -0.290 5.290 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.405 0.595 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.015 0.985 33 H 0.010 0.990 34 H 0.262 0.738 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -9.230 -29.831 31.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.118 3.882 3 H 0.123 0.877 4 N -0.386 5.386 5 C 0.303 3.697 6 O -0.412 6.412 7 C -0.181 4.181 8 C -0.125 4.125 9 C -0.052 4.052 10 C -0.555 4.555 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.545 5.545 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.096 4.096 19 C -0.292 4.292 20 C -0.091 4.091 21 N -0.159 5.159 22 C -0.040 4.040 23 N -0.113 5.113 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.240 0.760 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.192 0.808 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.828 -9.610 -29.035 30.715 hybrid contribution 0.430 -0.739 -0.462 0.972 sum -2.398 -10.349 -29.497 31.352 Atomic orbital electron populations 1.22137 0.93805 1.02518 1.03044 1.19201 0.94069 0.95920 0.79004 0.87655 1.46142 1.68718 1.14492 1.09220 1.21156 0.76662 0.87461 0.84429 1.90682 1.49418 1.16164 1.84935 1.21864 1.02211 1.00719 0.93314 1.21259 1.02139 0.96772 0.92303 1.19611 0.95511 0.96506 0.93614 1.21182 1.43607 0.97841 0.92890 0.90910 1.25056 0.95274 0.97370 0.95993 1.69927 1.48174 1.34895 1.01491 0.86762 0.79222 0.85957 0.77214 1.20384 1.21492 1.19014 1.22402 0.99188 0.91808 0.96182 1.21342 1.13725 1.01442 0.92657 1.22534 1.01425 0.86339 0.98838 1.48489 1.51049 1.09188 1.07135 1.21867 1.00259 0.81614 1.00253 1.77205 1.20911 1.16259 0.96950 0.92355 0.90913 0.91440 0.76028 0.89371 0.89447 0.92100 0.92042 0.96660 0.97129 0.92842 0.83178 0.80773 0.90733 0.89460 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.47 37.16 0.35 -1.34 16 2 C 0.23 2.71 3.05 -69.08 -0.21 2.50 16 3 H 0.11 1.36 7.58 -51.93 -0.39 0.97 16 4 N -0.73 -9.67 5.07 -54.93 -0.28 -9.95 16 5 C 0.52 8.46 7.79 -10.98 -0.09 8.38 16 6 O -0.54 -10.70 15.64 5.56 0.09 -10.61 16 7 C -0.14 -2.33 5.70 -27.88 -0.16 -2.49 16 8 C -0.09 -1.86 4.44 -26.73 -0.12 -1.98 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.52 -15.40 9.66 -34.44 -0.33 -15.74 16 11 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 12 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 13 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 14 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 18 C 0.07 0.80 6.19 -82.40 -0.51 0.29 16 19 C -0.26 -2.40 10.74 -40.01 -0.43 -2.83 16 20 C 0.05 0.40 11.49 -17.23 -0.20 0.21 16 21 N -0.38 -3.26 4.01 -68.17 -0.27 -3.53 16 22 C 0.10 0.45 11.47 59.84 0.69 1.13 16 23 N -0.29 -3.35 11.81 33.67 0.40 -2.95 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.40 4.81 8.00 -40.82 -0.33 4.48 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 33 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 34 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 35 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -36.42 332.33 -6.31 -42.74 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.14 Total: 0.36 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.22 Total: -10.53 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.62 Total: -44.47 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.42 -6.31 -42.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594041165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.813 kcal (2) G-P(sol) polarization free energy of solvation -36.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds