Wall clock time and date at job start Mon Mar 30 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 5 5 C 1.34774 * 119.99544 * 274.99692 * 4 2 1 6 6 O 1.21279 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00275 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99908 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99794 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99992 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47123 * 90.00328 * 14 12 10 16 16 H 1.48506 * 109.46940 * 210.00450 * 14 12 10 17 17 H 1.48509 * 109.47046 * 330.00079 * 14 12 10 18 18 C 1.50705 * 109.46565 * 240.00494 * 2 1 3 19 19 C 1.39878 * 125.89618 * 84.71401 * 18 2 1 20 20 C 1.35312 * 107.91580 * 179.85864 * 19 18 2 21 21 N 1.34943 * 107.75113 * 0.39953 * 20 19 18 22 22 C 1.46496 * 126.04152 * 179.74842 * 21 20 19 23 23 N 1.30832 * 125.90089 * 265.02080 * 18 2 1 24 24 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 26 26 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 27 27 H 0.96994 * 120.00700 * 94.99812 * 4 2 1 28 28 H 1.09001 * 109.46953 * 299.99667 * 7 5 4 29 29 H 1.09000 * 109.47318 * 59.99264 * 7 5 4 30 30 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 31 31 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 32 32 H 1.08992 * 109.47554 * 299.99696 * 9 8 7 33 33 H 1.08996 * 109.47261 * 60.00229 * 9 8 7 34 34 H 0.96996 * 119.99562 * 180.02562 * 13 12 10 35 35 H 1.07996 * 126.03610 * 359.97438 * 19 18 2 36 36 H 1.08007 * 126.12107 * 180.14513 * 20 19 18 37 37 H 1.08998 * 109.47296 * 270.02556 * 22 21 20 38 38 H 1.08998 * 109.47083 * 30.02316 * 22 21 20 39 39 H 1.08997 * 109.47175 * 150.01900 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1472 -0.0185 2.3570 6 8 1.8583 1.1581 2.4118 7 6 2.6501 -0.7289 3.5873 8 6 2.7009 0.2539 4.7588 9 6 3.2109 -0.4676 6.0079 10 6 3.2616 0.5007 7.1616 11 1 2.9598 1.5277 7.0184 12 6 3.6933 0.0753 8.4001 13 7 3.7370 0.9201 9.4071 14 14 4.2146 -1.7013 8.6481 15 1 5.6676 -1.8339 8.3717 16 1 3.9382 -2.1072 10.0495 17 1 3.4524 -2.5750 7.7201 18 6 2.0322 -0.7103 -1.2306 19 6 2.2071 -0.1371 -2.4945 20 6 2.6753 -1.0968 -3.3256 21 7 2.7841 -2.2390 -2.6153 22 6 3.2485 -3.5309 -3.1265 23 7 2.3746 -1.9710 -1.3027 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 2.2491 -1.6319 1.1524 28 1 1.9779 -1.5512 3.8323 29 1 3.6494 -1.1208 3.3976 30 1 3.3729 1.0764 4.5140 31 1 1.7014 0.6453 4.9483 32 1 2.5387 -1.2899 6.2525 33 1 4.2103 -0.8592 5.8186 34 1 4.0410 0.6209 10.2782 35 1 2.0060 0.8903 -2.7595 36 1 2.9147 -0.9720 -4.3714 37 1 2.3984 -4.0990 -3.5043 38 1 3.9631 -3.3670 -3.9330 39 1 3.7295 -4.0881 -2.3226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594041165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:25 Heat of formation + Delta-G solvation = -1.071153 kcal Electronic energy + Delta-G solvation = -19203.927102 eV Core-core repulsion = 16146.781204 eV Total energy + Delta-G solvation = -3057.145899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.22816 -40.74209 -36.99599 -36.04372 -34.17886 -33.87145 -31.78942 -31.02650 -29.87391 -27.49971 -25.87484 -24.16837 -22.37869 -21.92222 -21.05427 -20.66513 -18.94729 -18.25958 -17.54302 -16.99227 -16.70012 -16.38049 -16.24213 -15.26765 -15.14416 -14.79557 -14.71762 -14.56138 -14.22110 -13.92044 -13.76823 -13.38988 -13.27999 -13.14644 -12.93524 -12.68402 -12.49176 -12.32337 -11.78170 -11.73003 -11.70310 -11.48536 -11.31710 -10.79608 -10.74168 -10.36411 -10.09182 -9.50396 -8.26948 -6.32219 0.91518 1.38673 1.42105 1.54402 1.60805 1.65831 1.76060 2.21421 2.39727 3.08047 3.40840 3.88458 3.88796 4.12925 4.18409 4.22304 4.24985 4.29635 4.46941 4.64508 4.71226 4.72991 4.77086 4.86095 4.89517 4.92483 4.97425 5.04470 5.06183 5.18711 5.45974 5.58485 5.59749 5.61474 5.68970 6.16165 6.32007 6.54825 6.69160 6.76343 7.27077 7.32048 8.90757 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.003185 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.332775 B = 8788.130421 C = 9406.680086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.224 3.776 3 H 0.091 0.909 4 N -0.715 5.715 5 C 0.516 3.484 6 O -0.581 6.581 7 C -0.132 4.132 8 C -0.079 4.079 9 C -0.010 4.010 10 C -0.539 4.539 11 H 0.021 0.979 12 C -0.003 4.003 13 N -0.957 5.957 14 Si 0.961 3.039 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.237 1.237 18 C 0.055 3.945 19 C -0.285 4.285 20 C 0.068 3.932 21 N -0.378 5.378 22 C 0.092 3.908 23 N -0.324 5.324 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.414 0.586 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.266 0.734 35 H 0.162 0.838 36 H 0.217 0.783 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -12.566 -32.489 34.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.117 3.883 3 H 0.109 0.891 4 N -0.368 5.368 5 C 0.305 3.695 6 O -0.460 6.460 7 C -0.171 4.171 8 C -0.118 4.118 9 C -0.047 4.047 10 C -0.577 4.577 11 H 0.039 0.961 12 C -0.199 4.199 13 N -0.598 5.598 14 Si 0.783 3.217 15 H -0.189 1.189 16 H -0.211 1.211 17 H -0.160 1.160 18 C -0.111 4.111 19 C -0.314 4.314 20 C -0.079 4.079 21 N -0.161 5.161 22 C -0.047 4.047 23 N -0.148 5.148 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.251 0.749 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.179 0.821 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.111 -12.982 -31.740 34.357 hybrid contribution 0.200 0.372 0.281 0.508 sum -1.911 -12.609 -31.459 33.945 Atomic orbital electron populations 1.22052 0.93008 1.02602 1.02997 1.19214 0.94699 0.95315 0.79076 0.89103 1.45987 1.67341 1.14758 1.08707 1.21113 0.76314 0.86850 0.85266 1.90674 1.51656 1.18037 1.85645 1.21720 1.04487 0.99732 0.91170 1.21036 1.00066 0.97191 0.93467 1.19549 0.96810 0.95698 0.92647 1.21560 1.43768 0.96909 0.95462 0.96072 1.26185 0.95019 1.03430 0.95257 1.70105 1.49422 1.37915 1.02317 0.85504 0.79571 0.78814 0.77785 1.18937 1.21110 1.16044 1.22262 1.00263 0.92224 0.96345 1.21633 1.14826 1.02685 0.92272 1.23179 0.99272 0.85195 1.00257 1.48858 1.50140 1.10738 1.06321 1.22211 1.01448 0.80166 1.00914 1.77098 1.22154 1.16364 0.99153 0.92084 0.92846 0.89573 0.74938 0.86694 0.86915 0.94362 0.94224 0.95179 0.95412 0.92497 0.82051 0.76615 0.89488 0.86402 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.47 71.98 0.68 -2.49 16 2 C 0.22 5.34 3.05 44.25 0.14 5.47 16 3 H 0.09 2.43 7.58 -2.39 -0.02 2.41 16 4 N -0.72 -18.35 5.07 -446.10 -2.26 -20.61 16 5 C 0.52 16.83 7.79 87.66 0.68 17.52 16 6 O -0.58 -23.93 15.64 -3.02 -0.05 -23.98 16 7 C -0.13 -4.11 5.70 29.85 0.17 -3.94 16 8 C -0.08 -3.44 4.44 30.59 0.14 -3.31 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.54 -33.07 9.66 25.60 0.25 -32.82 16 11 H 0.02 1.45 7.99 -2.91 -0.02 1.43 16 12 C 0.00 -0.19 5.47 84.66 0.46 0.28 16 13 N -0.96 -62.63 13.96 21.45 0.30 -62.33 16 14 Si 0.96 44.89 27.47 68.60 1.88 46.78 16 15 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.24 -9.97 6.54 99.48 0.65 -9.31 16 18 C 0.05 1.17 6.19 43.11 0.27 1.44 16 19 C -0.28 -4.71 10.74 21.99 0.24 -4.47 16 20 C 0.07 0.79 11.49 83.54 0.96 1.75 16 21 N -0.38 -5.53 4.01 -369.58 -1.48 -7.02 16 22 C 0.09 0.53 11.47 127.77 1.47 2.00 16 23 N -0.32 -6.95 11.81 -47.38 -0.56 -7.50 16 24 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.41 9.19 8.00 -92.71 -0.74 8.45 16 28 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 32 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 33 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 34 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 35 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.22 0.48 8.06 -2.91 -0.02 0.45 16 37 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.12 -0.05 8.14 -2.39 -0.02 -0.06 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -82.80 332.33 3.63 -79.17 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.23 Total: 14.42 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 5.57 Total: -18.93 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -4.00 Total: -97.46 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -82.80 3.63 -79.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594041165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.101 kcal (2) G-P(sol) polarization free energy of solvation -82.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds