Wall clock time and date at job start Mon Mar 30 2020 04:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00035 * 2 1 4 4 H 1.48497 * 109.46688 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47059 * 299.99296 * 3 2 1 6 6 H 1.48501 * 109.46953 * 59.99967 * 3 2 1 7 7 C 1.37872 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47197 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47148 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00017 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00264 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00315 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47199 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47060 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.36890 * 126.39537 * 270.03108 * 18 17 16 20 20 C 1.34669 * 106.81617 * 179.97438 * 19 18 17 21 21 N 1.34134 * 108.02026 * 0.02562 * 20 19 18 22 22 C 1.30493 * 109.25480 * 0.02562 * 21 20 19 23 23 H 0.97005 * 119.99815 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46767 * 59.99670 * 9 7 2 25 25 H 1.08998 * 109.46744 * 300.00253 * 9 7 2 26 26 H 1.09006 * 109.47098 * 59.99995 * 10 9 7 27 27 H 1.09002 * 109.47278 * 300.00286 * 10 9 7 28 28 H 1.08993 * 109.47464 * 60.00213 * 11 10 9 29 29 H 1.09005 * 109.47213 * 299.99481 * 11 10 9 30 30 H 0.97006 * 119.99803 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.47142 * 60.00589 * 15 14 12 32 32 H 1.08998 * 109.47581 * 300.00052 * 15 14 12 33 33 H 1.09006 * 109.47212 * 60.00173 * 16 15 14 34 34 H 1.09002 * 109.47266 * 300.00402 * 16 15 14 35 35 H 1.09002 * 109.47343 * 60.00395 * 17 16 15 36 36 H 1.08998 * 109.47519 * 299.99774 * 17 16 15 37 37 H 1.07996 * 126.59258 * 359.97438 * 19 18 17 38 38 H 1.08002 * 125.99042 * 180.26007 * 20 19 18 39 39 H 1.08006 * 125.64594 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4594 -6.1326 0.0005 13 8 3.6518 -5.9110 0.0009 14 7 2.0102 -7.4032 0.0006 15 6 2.9621 -8.5167 0.0007 16 6 2.1971 -9.8417 0.0002 17 6 3.1913 -11.0046 0.0009 18 7 2.4588 -12.2734 -0.0003 19 6 2.0510 -12.9768 1.1010 20 6 1.4168 -14.0754 0.6488 21 7 1.4373 -14.0439 -0.6921 22 6 2.0605 -12.9679 -1.0878 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8718 -3.6043 0.8906 27 1 2.8719 -3.6043 -0.8894 28 1 0.8538 -5.0446 -0.8903 29 1 0.8532 -5.0451 0.8897 30 1 1.0565 -7.5804 -0.0001 31 1 3.5888 -8.4590 0.8907 32 1 3.5888 -8.4591 -0.8893 33 1 1.5707 -9.8993 -0.8901 34 1 1.5701 -9.8997 0.8899 35 1 3.8173 -10.9470 0.8913 36 1 3.8186 -10.9470 -0.8887 37 1 2.2078 -12.7034 2.1339 38 1 0.9670 -14.8448 1.2587 39 1 2.2286 -12.6796 -2.1150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594213428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:03 Heat of formation + Delta-G solvation = -0.310551 kcal Electronic energy + Delta-G solvation = -18471.026190 eV Core-core repulsion = 15413.913273 eV Total energy + Delta-G solvation = -3057.112917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.37312 -39.59519 -36.54573 -34.39936 -34.14944 -32.11943 -31.18695 -29.75559 -28.08677 -26.06642 -23.79722 -22.45818 -21.68876 -21.29831 -20.65186 -19.77173 -17.87591 -16.91875 -16.25415 -16.15883 -15.71906 -15.49992 -15.23097 -14.53252 -14.43592 -14.24145 -13.67602 -13.57044 -13.40800 -13.01829 -12.72156 -12.30413 -12.18668 -11.81197 -11.61416 -11.33800 -10.84165 -10.63445 -10.53480 -10.32846 -10.06326 -9.75464 -9.71279 -9.30367 -9.16075 -9.03134 -8.88192 -8.34266 -5.99610 -4.01037 1.68102 2.32883 2.83715 2.84846 3.17703 3.32195 3.39545 3.45202 4.05626 4.30569 4.37047 4.38410 4.47853 4.58034 4.72126 4.78487 5.06645 5.09706 5.21470 5.32220 5.36555 5.46673 5.59079 5.67615 5.68555 5.88416 6.20777 6.33179 6.37833 6.69210 6.79411 6.89781 7.13188 7.47545 7.68935 7.72699 7.81176 8.01008 8.35487 8.44936 9.06301 9.63086 11.11892 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.068100 B = 0.002205 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.061969 B =12695.331849 C =12894.717823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.019 3.981 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.513 3.487 13 O -0.537 6.537 14 N -0.742 5.742 15 C 0.122 3.878 16 C -0.147 4.147 17 C 0.107 3.893 18 N -0.459 5.459 19 C -0.056 4.056 20 C -0.032 4.032 21 N -0.497 5.497 22 C 0.181 3.819 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.400 0.600 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -25.462 1.009 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.018 4.018 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.301 3.699 13 O -0.413 6.413 14 N -0.396 5.396 15 C -0.002 4.002 16 C -0.186 4.186 17 C -0.016 4.016 18 N -0.141 5.141 19 C -0.189 4.189 20 C -0.180 4.180 21 N -0.215 5.215 22 C -0.101 4.101 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.234 0.766 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.191 0.809 38 H 0.186 0.814 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.428 -25.642 0.497 25.875 hybrid contribution 0.221 1.439 0.580 1.567 sum 3.650 -24.203 1.077 24.501 Atomic orbital electron populations 1.69973 1.06033 1.26445 1.51263 1.25031 0.94874 0.99295 0.95401 0.86532 0.80219 0.83731 0.77528 1.19686 1.21032 1.21040 1.21309 0.93227 0.90994 1.50043 0.92516 1.19140 0.93978 0.91493 0.97145 1.21451 0.98649 0.91532 1.01696 1.21854 0.98128 0.94049 1.03815 1.21302 0.90430 0.83645 0.74502 1.90682 1.17366 1.84709 1.48505 1.46095 1.10000 1.05757 1.77754 1.21112 0.92150 0.84266 1.02719 1.22161 0.98867 0.93243 1.04300 1.21811 0.94011 0.80292 1.05458 1.45609 1.42671 1.18788 1.07068 1.22785 1.06787 0.96439 0.92886 1.22335 1.04993 0.99379 0.91263 1.70307 1.19419 1.19595 1.12225 1.25051 1.00662 0.90619 0.93775 0.93113 0.96592 0.96592 0.92699 0.92695 0.89294 0.89319 0.76551 0.91349 0.91295 0.90249 0.90330 0.88483 0.88246 0.80925 0.81416 0.77955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -2.02 4.44 -26.73 -0.12 -2.14 16 11 C -0.14 -2.19 5.70 -27.88 -0.16 -2.35 16 12 C 0.51 7.70 7.83 -10.99 -0.09 7.61 16 13 O -0.54 -10.24 15.98 5.56 0.09 -10.15 16 14 N -0.74 -7.51 5.56 -60.29 -0.33 -7.85 16 15 C 0.12 0.96 5.67 -4.04 -0.02 0.94 16 16 C -0.15 -0.74 5.65 -26.73 -0.15 -0.89 16 17 C 0.11 0.45 6.15 -4.04 -0.02 0.43 16 18 N -0.46 -3.02 2.75 -118.58 -0.33 -3.35 16 19 C -0.06 -0.39 11.58 -16.56 -0.19 -0.59 16 20 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 21 N -0.50 -5.28 11.25 -14.66 -0.16 -5.44 16 22 C 0.18 1.43 12.56 -90.38 -1.14 0.30 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.40 3.02 8.47 -40.82 -0.35 2.67 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.20 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -36.12 337.00 -8.82 -44.94 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.22 Total: -3.36 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.65 Total: -10.53 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.09 Total: -42.87 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.12 -8.82 -44.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594213428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.633 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds