Wall clock time and date at job start Mon Mar 30 2020 04:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00035 * 2 1 4 4 H 1.48497 * 109.46688 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47059 * 299.99296 * 3 2 1 6 6 H 1.48501 * 109.46953 * 59.99967 * 3 2 1 7 7 C 1.37872 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47197 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47148 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00017 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00264 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00315 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47199 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47060 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.36890 * 126.39537 * 270.03108 * 18 17 16 20 20 C 1.34669 * 106.81617 * 179.97438 * 19 18 17 21 21 N 1.34134 * 108.02026 * 0.02562 * 20 19 18 22 22 C 1.30493 * 109.25480 * 0.02562 * 21 20 19 23 23 H 0.97005 * 119.99815 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46767 * 59.99670 * 9 7 2 25 25 H 1.08998 * 109.46744 * 300.00253 * 9 7 2 26 26 H 1.09006 * 109.47098 * 59.99995 * 10 9 7 27 27 H 1.09002 * 109.47278 * 300.00286 * 10 9 7 28 28 H 1.08993 * 109.47464 * 60.00213 * 11 10 9 29 29 H 1.09005 * 109.47213 * 299.99481 * 11 10 9 30 30 H 0.97006 * 119.99803 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.47142 * 60.00589 * 15 14 12 32 32 H 1.08998 * 109.47581 * 300.00052 * 15 14 12 33 33 H 1.09006 * 109.47212 * 60.00173 * 16 15 14 34 34 H 1.09002 * 109.47266 * 300.00402 * 16 15 14 35 35 H 1.09002 * 109.47343 * 60.00395 * 17 16 15 36 36 H 1.08998 * 109.47519 * 299.99774 * 17 16 15 37 37 H 1.07996 * 126.59258 * 359.97438 * 19 18 17 38 38 H 1.08002 * 125.99042 * 180.26007 * 20 19 18 39 39 H 1.08006 * 125.64594 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4594 -6.1326 0.0005 13 8 3.6518 -5.9110 0.0009 14 7 2.0102 -7.4032 0.0006 15 6 2.9621 -8.5167 0.0007 16 6 2.1971 -9.8417 0.0002 17 6 3.1913 -11.0046 0.0009 18 7 2.4588 -12.2734 -0.0003 19 6 2.0510 -12.9768 1.1010 20 6 1.4168 -14.0754 0.6488 21 7 1.4373 -14.0439 -0.6921 22 6 2.0605 -12.9679 -1.0878 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8718 -3.6043 0.8906 27 1 2.8719 -3.6043 -0.8894 28 1 0.8538 -5.0446 -0.8903 29 1 0.8532 -5.0451 0.8897 30 1 1.0565 -7.5804 -0.0001 31 1 3.5888 -8.4590 0.8907 32 1 3.5888 -8.4591 -0.8893 33 1 1.5707 -9.8993 -0.8901 34 1 1.5701 -9.8997 0.8899 35 1 3.8173 -10.9470 0.8913 36 1 3.8186 -10.9470 -0.8887 37 1 2.2078 -12.7034 2.1339 38 1 0.9670 -14.8448 1.2587 39 1 2.2286 -12.6796 -2.1150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594213428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:03 Heat of formation + Delta-G solvation = -23.348998 kcal Electronic energy + Delta-G solvation = -18472.025212 eV Core-core repulsion = 15413.913273 eV Total energy + Delta-G solvation = -3058.111939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.90067 -40.74470 -37.25378 -36.09922 -35.09355 -34.02130 -31.98070 -30.32214 -29.70187 -27.00490 -25.42936 -23.15878 -22.28841 -22.23802 -21.74179 -21.08751 -18.62127 -18.36027 -17.74739 -17.04346 -16.69765 -16.47591 -16.23047 -16.06156 -15.22213 -14.92736 -14.72685 -14.67922 -14.24763 -14.06813 -13.81568 -13.55220 -13.45113 -13.06107 -12.71251 -12.62502 -12.51848 -12.37081 -12.01866 -11.55352 -11.47313 -11.25610 -10.93282 -10.83574 -10.55095 -10.52740 -10.09590 -9.42838 -8.20773 -6.30576 1.16054 1.39207 1.39625 1.53306 1.66268 1.84354 2.24789 2.30145 2.42168 3.12247 3.72749 3.79282 3.86391 3.91938 4.03207 4.17493 4.22583 4.27259 4.29207 4.43399 4.62731 4.66485 4.78419 4.82567 4.94145 4.98815 5.08556 5.12321 5.19746 5.37918 5.45351 5.55200 5.75764 5.85153 5.87195 6.27303 6.31262 6.54853 6.85395 7.17383 7.27824 7.38230 8.90839 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.068100 B = 0.002205 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.061969 B =12695.331849 C =12894.717823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.024 3.976 10 C -0.083 4.083 11 C -0.132 4.132 12 C 0.516 3.484 13 O -0.584 6.584 14 N -0.721 5.721 15 C 0.121 3.879 16 C -0.131 4.131 17 C 0.107 3.893 18 N -0.456 5.456 19 C -0.051 4.051 20 C -0.062 4.062 21 N -0.543 5.543 22 C 0.174 3.826 23 H 0.264 0.736 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.416 0.584 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.199 0.801 38 H 0.176 0.824 39 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -25.788 1.180 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.121 4.121 11 C -0.172 4.172 12 C 0.304 3.696 13 O -0.464 6.464 14 N -0.375 5.375 15 C -0.003 4.003 16 C -0.169 4.169 17 C -0.015 4.015 18 N -0.138 5.138 19 C -0.184 4.184 20 C -0.209 4.209 21 N -0.262 5.262 22 C -0.108 4.108 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.253 0.747 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.216 0.784 38 H 0.193 0.807 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.758 -26.011 0.673 26.289 hybrid contribution 0.078 1.501 0.531 1.594 sum 3.836 -24.510 1.204 24.837 Atomic orbital electron populations 1.70073 1.07482 1.27708 1.51697 1.25922 0.95852 1.03120 0.94766 0.85441 0.78909 0.78990 0.77977 1.19178 1.20109 1.20117 1.21731 0.93359 0.92819 1.50511 0.93033 1.19035 0.94254 0.92458 0.95527 1.21162 0.97610 0.93063 1.00298 1.21682 0.98000 0.91788 1.05710 1.20995 0.89292 0.84897 0.74405 1.90671 1.18989 1.85551 1.51176 1.45885 1.11402 1.04749 1.75418 1.21235 0.91987 0.84549 1.02513 1.21988 0.98617 0.91750 1.04565 1.21946 0.93693 0.78819 1.07022 1.45726 1.42316 1.19157 1.06600 1.23187 1.05469 0.95707 0.94054 1.22663 1.06362 1.00774 0.91107 1.70255 1.21155 1.21388 1.13389 1.25532 1.00041 0.90196 0.95067 0.92683 0.98079 0.98073 0.94092 0.94091 0.87427 0.87445 0.74702 0.91655 0.91514 0.89931 0.90130 0.87164 0.86675 0.78410 0.80651 0.75637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.08 -3.56 4.44 30.59 0.14 -3.43 16 11 C -0.13 -4.02 5.70 29.85 0.17 -3.85 16 12 C 0.52 14.78 7.83 87.66 0.69 15.47 16 13 O -0.58 -22.05 15.98 -3.04 -0.05 -22.10 16 14 N -0.72 -12.86 5.56 -463.06 -2.57 -15.44 16 15 C 0.12 1.61 5.67 86.38 0.49 2.10 16 16 C -0.13 -0.91 5.65 30.59 0.17 -0.74 16 17 C 0.11 0.58 6.15 86.38 0.53 1.11 16 18 N -0.46 -4.96 2.75 -529.07 -1.46 -6.41 16 19 C -0.05 -0.62 11.58 83.08 0.96 0.35 16 20 C -0.06 -1.06 11.87 83.52 0.99 -0.06 16 21 N -0.54 -11.29 11.25 -200.31 -2.25 -13.54 16 22 C 0.17 2.49 12.56 180.27 2.26 4.76 16 23 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.04 1.83 8.10 -2.38 -0.02 1.82 16 27 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 28 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 30 H 0.42 4.97 8.47 -92.70 -0.79 4.18 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -79.17 337.00 3.47 -75.70 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.24 Total: 4.66 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 7.25 Total: -14.00 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -6.00 Total: -91.20 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.10 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -79.17 3.47 -75.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594213428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.351 kcal (2) G-P(sol) polarization free energy of solvation -79.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds