Wall clock time and date at job start Mon Mar 30 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46816 * 199.44358 * 3 2 1 5 5 C 1.52999 * 109.47232 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47232 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47080 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99950 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00284 * 179.97438 * 7 6 5 10 10 C 1.46957 * 120.59483 * 179.97438 * 9 7 6 11 11 C 1.53378 * 108.63600 * 235.24927 * 10 9 7 12 12 N 1.46960 * 108.63441 * 310.57541 * 11 10 9 13 13 C 1.36929 * 120.59772 * 235.19929 * 12 11 10 14 14 H 1.08001 * 120.00154 * 26.80307 * 13 12 11 15 15 C 1.38818 * 120.00276 * 206.52209 * 13 12 11 16 16 N 1.31616 * 120.00013 * 217.35632 * 15 13 12 17 17 Si 1.86795 * 119.99797 * 37.35637 * 15 13 12 18 18 H 1.48497 * 109.47307 * 95.28345 * 17 15 13 19 19 H 1.48499 * 109.46918 * 215.28171 * 17 15 13 20 20 H 1.48500 * 109.47058 * 335.28197 * 17 15 13 21 21 C 1.46972 * 118.81093 * 55.48291 * 12 11 10 22 22 C 1.46973 * 120.59110 * 0.02618 * 9 7 6 23 23 H 1.08997 * 109.46963 * 79.44841 * 3 2 1 24 24 H 1.08994 * 109.47088 * 319.44320 * 3 2 1 25 25 H 1.08997 * 109.47641 * 60.00165 * 4 3 2 26 26 H 1.09010 * 109.47457 * 300.00166 * 4 3 2 27 27 H 1.09005 * 109.47388 * 59.99758 * 5 4 3 28 28 H 1.08999 * 109.47114 * 299.99901 * 5 4 3 29 29 H 1.08997 * 109.46961 * 60.00215 * 6 5 4 30 30 H 1.08994 * 109.47261 * 299.99590 * 6 5 4 31 31 H 1.09004 * 109.60829 * 115.50719 * 10 9 7 32 32 H 1.08993 * 109.75563 * 355.08178 * 10 9 7 33 33 H 1.09001 * 109.60979 * 190.83526 * 11 10 9 34 34 H 1.08998 * 109.74677 * 70.41012 * 11 10 9 35 35 H 0.97000 * 120.00046 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.61298 * 64.25873 * 21 12 11 37 37 H 1.08995 * 109.61261 * 184.77395 * 21 12 11 38 38 H 1.08994 * 109.60538 * 244.49313 * 22 9 7 39 39 H 1.09004 * 109.60748 * 4.83428 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1174 1.3611 0.4802 5 6 4.6474 1.3621 0.4796 6 6 5.1567 2.7224 0.9604 7 6 6.6637 2.7231 0.9604 8 8 7.2706 1.7330 0.6108 9 7 7.3371 3.8241 1.3490 10 6 8.8066 3.8389 1.3546 11 6 9.2875 4.2278 2.7581 12 7 8.5653 5.4348 3.1843 13 6 9.2494 6.5530 3.5800 14 1 10.2426 6.7412 3.1998 15 6 8.6641 7.4478 4.4652 16 7 8.8627 8.7409 4.3214 17 14 7.5945 6.8166 5.8605 18 1 8.4128 6.6897 7.0931 19 1 6.4816 7.7698 6.1012 20 1 7.0387 5.4885 5.4964 21 6 7.0957 5.4180 3.1841 22 6 6.6149 5.0309 1.7757 23 1 2.9714 -0.1874 -1.0103 24 1 2.9717 -0.7799 0.6682 25 1 2.7540 1.5493 1.4904 26 1 2.7536 2.1419 -0.1880 27 1 5.0105 1.1742 -0.5308 28 1 5.0115 0.5815 1.1476 29 1 4.7936 2.9098 1.9709 30 1 4.7927 3.5033 0.2928 31 1 9.1678 4.5679 0.6291 32 1 9.1860 2.8496 1.0989 33 1 10.3581 4.4312 2.7347 34 1 9.0847 3.4148 3.4553 35 1 8.4540 9.3662 4.9402 36 1 6.7381 4.6869 3.9092 37 1 6.7185 6.4075 3.4421 38 1 6.8197 5.8448 1.0803 39 1 5.5441 4.8281 1.7965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594294725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:59 Heat of formation + Delta-G solvation = 9.641193 kcal Electronic energy + Delta-G solvation = -19815.531779 eV Core-core repulsion = 16758.850402 eV Total energy + Delta-G solvation = -3056.681377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.85254 -37.49771 -37.03898 -35.25638 -33.97294 -31.92081 -31.21980 -30.41494 -27.40158 -25.67960 -23.42314 -23.23230 -21.72494 -20.53886 -18.73001 -17.69859 -17.22578 -16.40501 -16.15950 -15.67336 -15.28699 -14.79261 -14.33181 -14.28183 -14.07801 -13.66765 -13.40721 -13.30977 -13.03107 -12.72382 -12.40015 -12.25373 -12.18447 -11.95168 -11.63626 -11.47186 -11.38300 -11.02255 -10.85676 -10.82770 -10.50901 -10.40365 -10.22538 -9.54528 -9.49667 -8.76455 -8.25959 -7.07121 -6.15120 -3.33918 2.44756 2.49132 2.85574 3.26016 3.32229 3.44051 3.49028 3.67291 4.46675 4.52390 4.59180 4.60730 4.79914 5.00693 5.03585 5.13722 5.19120 5.35401 5.44036 5.45052 5.58106 5.60042 5.63226 5.77870 5.87520 5.96112 6.04366 6.08312 6.11348 6.22668 6.46572 6.53701 6.70696 6.89399 7.26062 7.74351 7.82761 8.19639 8.41849 8.82979 9.61424 10.01418 10.99245 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025803 B = 0.003961 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.871823 B = 7067.137830 C = 7813.275756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.208 3.792 3 C -0.027 4.027 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.141 4.141 7 C 0.509 3.491 8 O -0.558 6.558 9 N -0.600 5.600 10 C 0.096 3.904 11 C 0.132 3.868 12 N -0.600 5.600 13 C -0.276 4.276 14 H 0.083 0.917 15 C 0.040 3.960 16 N -0.878 5.878 17 Si 0.834 3.166 18 H -0.292 1.292 19 H -0.293 1.293 20 H -0.258 1.258 21 C 0.131 3.869 22 C 0.085 3.915 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 -12.793 -7.771 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.110 4.110 3 C -0.067 4.067 4 C -0.157 4.157 5 C -0.140 4.140 6 C -0.181 4.181 7 C 0.298 3.702 8 O -0.438 6.438 9 N -0.332 5.332 10 C -0.028 4.028 11 C 0.005 3.995 12 N -0.323 5.323 13 C -0.403 4.403 14 H 0.100 0.900 15 C -0.162 4.162 16 N -0.517 5.517 17 Si 0.661 3.339 18 H -0.220 1.220 19 H -0.220 1.220 20 H -0.183 1.183 21 C 0.004 3.996 22 C -0.039 4.039 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.611 -13.099 -7.902 18.066 hybrid contribution -0.139 0.023 1.095 1.104 sum -9.749 -13.076 -6.807 17.674 Atomic orbital electron populations 1.81246 1.13248 1.08623 1.09028 1.29358 0.95458 0.93150 0.93043 1.19359 0.81173 1.00819 1.05367 1.21593 0.96332 0.95196 1.02557 1.21315 0.92919 0.96594 1.03169 1.21681 0.92739 0.99827 1.03885 1.20622 0.90082 0.82549 0.76998 1.90644 1.70477 1.33266 1.49384 1.48063 1.07508 1.13383 1.64235 1.22175 0.79035 1.01934 0.99684 1.21347 0.96829 0.89159 0.92120 1.44301 1.00197 1.11220 1.76597 1.18770 1.02500 0.96409 1.22653 0.89982 1.25211 0.97574 0.94675 0.98739 1.70120 1.44891 1.00980 1.35733 0.87609 0.80174 0.80060 0.86047 1.21958 1.22007 1.18254 1.21776 0.85247 1.00167 0.92401 1.22588 0.95290 0.86686 0.99371 0.87181 0.87171 0.90873 0.90902 0.90676 0.90661 0.88874 0.88948 0.91601 0.89721 0.90780 0.95651 0.92669 0.94980 0.90431 0.90907 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.21 18.54 42.16 0.78 -4.43 16 2 C 0.21 1.69 15.43 -20.76 -0.32 1.37 16 3 C -0.03 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.12 -0.64 5.17 -26.73 -0.14 -0.77 16 5 C -0.10 -0.78 4.50 -26.73 -0.12 -0.90 16 6 C -0.14 -1.37 4.04 -27.88 -0.11 -1.48 16 7 C 0.51 7.36 7.70 -10.98 -0.08 7.28 16 8 O -0.56 -9.59 15.39 5.55 0.09 -9.50 16 9 N -0.60 -9.46 2.95 -172.23 -0.51 -9.97 16 10 C 0.10 1.59 6.59 -3.60 -0.02 1.57 16 11 C 0.13 2.50 6.67 -3.60 -0.02 2.47 16 12 N -0.60 -13.35 2.71 -171.78 -0.47 -13.82 16 13 C -0.28 -7.26 9.84 -15.06 -0.15 -7.41 16 14 H 0.08 2.31 8.05 -52.49 -0.42 1.89 16 15 C 0.04 1.08 4.80 -17.43 -0.08 0.99 16 16 N -0.88 -25.36 13.97 55.49 0.78 -24.58 16 17 Si 0.83 20.10 26.46 -169.99 -4.50 15.60 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.26 -5.86 4.99 56.52 0.28 -5.58 16 21 C 0.13 2.57 4.58 -3.38 -0.02 2.55 16 22 C 0.09 1.31 6.52 -3.38 -0.02 1.29 16 23 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 28 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.09 0.83 7.72 -51.93 -0.40 0.43 16 30 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 33 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.03 0.64 6.78 -51.93 -0.35 0.29 16 37 H 0.08 1.64 5.59 -51.93 -0.29 1.35 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 0.89 5.91 -51.93 -0.31 0.58 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -32.80 319.18 -6.30 -39.09 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -6.01 Total: -3.89 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.26 Total: 6.68 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.58 Total: -52.79 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.50 Total: 15.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.80 -6.30 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594294725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.734 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds