Wall clock time and date at job start Mon Mar 30 2020 04:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46816 * 199.44358 * 3 2 1 5 5 C 1.52999 * 109.47232 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47232 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47080 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99950 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00284 * 179.97438 * 7 6 5 10 10 C 1.46957 * 120.59483 * 179.97438 * 9 7 6 11 11 C 1.53378 * 108.63600 * 235.24927 * 10 9 7 12 12 N 1.46960 * 108.63441 * 310.57541 * 11 10 9 13 13 C 1.36929 * 120.59772 * 235.19929 * 12 11 10 14 14 H 1.08001 * 120.00154 * 26.80307 * 13 12 11 15 15 C 1.38818 * 120.00276 * 206.52209 * 13 12 11 16 16 N 1.31616 * 120.00013 * 217.35632 * 15 13 12 17 17 Si 1.86795 * 119.99797 * 37.35637 * 15 13 12 18 18 H 1.48497 * 109.47307 * 95.28345 * 17 15 13 19 19 H 1.48499 * 109.46918 * 215.28171 * 17 15 13 20 20 H 1.48500 * 109.47058 * 335.28197 * 17 15 13 21 21 C 1.46972 * 118.81093 * 55.48291 * 12 11 10 22 22 C 1.46973 * 120.59110 * 0.02618 * 9 7 6 23 23 H 1.08997 * 109.46963 * 79.44841 * 3 2 1 24 24 H 1.08994 * 109.47088 * 319.44320 * 3 2 1 25 25 H 1.08997 * 109.47641 * 60.00165 * 4 3 2 26 26 H 1.09010 * 109.47457 * 300.00166 * 4 3 2 27 27 H 1.09005 * 109.47388 * 59.99758 * 5 4 3 28 28 H 1.08999 * 109.47114 * 299.99901 * 5 4 3 29 29 H 1.08997 * 109.46961 * 60.00215 * 6 5 4 30 30 H 1.08994 * 109.47261 * 299.99590 * 6 5 4 31 31 H 1.09004 * 109.60829 * 115.50719 * 10 9 7 32 32 H 1.08993 * 109.75563 * 355.08178 * 10 9 7 33 33 H 1.09001 * 109.60979 * 190.83526 * 11 10 9 34 34 H 1.08998 * 109.74677 * 70.41012 * 11 10 9 35 35 H 0.97000 * 120.00046 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.61298 * 64.25873 * 21 12 11 37 37 H 1.08995 * 109.61261 * 184.77395 * 21 12 11 38 38 H 1.08994 * 109.60538 * 244.49313 * 22 9 7 39 39 H 1.09004 * 109.60748 * 4.83428 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1174 1.3611 0.4802 5 6 4.6474 1.3621 0.4796 6 6 5.1567 2.7224 0.9604 7 6 6.6637 2.7231 0.9604 8 8 7.2706 1.7330 0.6108 9 7 7.3371 3.8241 1.3490 10 6 8.8066 3.8389 1.3546 11 6 9.2875 4.2278 2.7581 12 7 8.5653 5.4348 3.1843 13 6 9.2494 6.5530 3.5800 14 1 10.2426 6.7412 3.1998 15 6 8.6641 7.4478 4.4652 16 7 8.8627 8.7409 4.3214 17 14 7.5945 6.8166 5.8605 18 1 8.4128 6.6897 7.0931 19 1 6.4816 7.7698 6.1012 20 1 7.0387 5.4885 5.4964 21 6 7.0957 5.4180 3.1841 22 6 6.6149 5.0309 1.7757 23 1 2.9714 -0.1874 -1.0103 24 1 2.9717 -0.7799 0.6682 25 1 2.7540 1.5493 1.4904 26 1 2.7536 2.1419 -0.1880 27 1 5.0105 1.1742 -0.5308 28 1 5.0115 0.5815 1.1476 29 1 4.7936 2.9098 1.9709 30 1 4.7927 3.5033 0.2928 31 1 9.1678 4.5679 0.6291 32 1 9.1860 2.8496 1.0989 33 1 10.3581 4.4312 2.7347 34 1 9.0847 3.4148 3.4553 35 1 8.4540 9.3662 4.9402 36 1 6.7381 4.6869 3.9092 37 1 6.7185 6.4075 3.4421 38 1 6.8197 5.8448 1.0803 39 1 5.5441 4.8281 1.7965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594294725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:58 Heat of formation + Delta-G solvation = -11.413575 kcal Electronic energy + Delta-G solvation = -19816.444782 eV Core-core repulsion = 16758.850402 eV Total energy + Delta-G solvation = -3057.594380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03947 -38.63580 -37.96067 -35.92364 -35.55835 -33.58365 -32.48853 -31.45420 -28.89070 -26.61849 -24.98621 -24.63524 -22.59643 -21.70097 -20.06281 -18.72977 -18.23449 -17.74506 -17.04411 -16.90422 -16.54542 -16.10103 -15.96612 -15.33449 -15.04136 -14.91966 -14.59802 -14.35996 -14.15941 -14.02803 -13.93358 -13.46961 -13.10762 -12.93372 -12.73126 -12.47999 -12.35887 -12.16139 -12.06813 -11.97318 -11.83690 -11.83523 -11.39271 -11.32290 -10.67541 -10.63587 -9.79381 -8.84886 -8.22380 -5.37843 1.37084 1.49730 1.55343 1.75542 1.84020 1.90079 2.12610 2.46097 2.95188 3.15125 3.41344 3.67767 4.00536 4.16779 4.18351 4.22429 4.39203 4.47109 4.51402 4.53193 4.61197 4.64122 4.75872 4.81701 4.88626 4.92234 4.97527 5.00622 5.05510 5.22373 5.22716 5.45880 5.55137 5.63264 5.86785 6.11889 6.58704 6.69232 6.91758 7.28023 7.64098 8.06358 8.95669 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025803 B = 0.003961 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.871823 B = 7067.137830 C = 7813.275756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.237 3.763 3 C -0.023 4.023 4 C -0.110 4.110 5 C -0.096 4.096 6 C -0.139 4.139 7 C 0.506 3.494 8 O -0.587 6.587 9 N -0.608 5.608 10 C 0.105 3.895 11 C 0.132 3.868 12 N -0.614 5.614 13 C -0.266 4.266 14 H 0.048 0.952 15 C -0.011 4.011 16 N -0.927 5.927 17 Si 0.900 3.100 18 H -0.306 1.306 19 H -0.293 1.293 20 H -0.234 1.234 21 C 0.123 3.877 22 C 0.098 3.902 23 H 0.133 0.867 24 H 0.131 0.869 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 -14.569 -8.174 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.079 4.079 3 C -0.063 4.063 4 C -0.149 4.149 5 C -0.134 4.134 6 C -0.179 4.179 7 C 0.297 3.703 8 O -0.468 6.468 9 N -0.340 5.340 10 C -0.020 4.020 11 C 0.006 3.994 12 N -0.338 5.338 13 C -0.395 4.395 14 H 0.066 0.934 15 C -0.209 4.209 16 N -0.570 5.570 17 Si 0.727 3.273 18 H -0.235 1.235 19 H -0.219 1.219 20 H -0.157 1.157 21 C -0.003 4.003 22 C -0.026 4.026 23 H 0.151 0.849 24 H 0.149 0.851 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.381 -14.924 -8.319 20.530 hybrid contribution 0.538 0.528 1.151 1.376 sum -10.843 -14.396 -7.169 19.396 Atomic orbital electron populations 1.81280 1.15509 1.10966 1.11560 1.30002 0.95959 0.91051 0.90873 1.19602 0.78448 1.00983 1.07272 1.21491 0.94580 0.95841 1.02980 1.21247 0.94171 0.95237 1.02715 1.21810 0.88697 1.01818 1.05539 1.21495 0.92002 0.81283 0.75492 1.90634 1.71617 1.34147 1.50410 1.48171 1.06935 1.14110 1.64805 1.21919 0.80433 1.01898 0.97728 1.21417 0.96576 0.87904 0.93489 1.44426 1.01597 1.11152 1.76648 1.18689 1.01497 0.97443 1.21881 0.93386 1.25703 0.99988 0.94573 1.00648 1.70201 1.47706 1.02203 1.36889 0.86578 0.78351 0.80493 0.81911 1.23508 1.21936 1.15700 1.21871 0.83463 0.99560 0.95375 1.22439 0.97606 0.86491 0.96099 0.84910 0.85110 0.90647 0.90344 0.90968 0.91340 0.87281 0.86704 0.92085 0.89194 0.91247 0.95285 0.92783 0.94339 0.92081 0.91560 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.54 18.54 20.01 0.37 -11.17 16 2 C 0.24 3.31 15.43 89.44 1.38 4.69 16 3 C -0.02 -0.11 5.70 28.79 0.16 0.05 16 4 C -0.11 -0.72 5.17 30.59 0.16 -0.56 16 5 C -0.10 -1.07 4.50 30.59 0.14 -0.93 16 6 C -0.14 -2.06 4.04 29.85 0.12 -1.94 16 7 C 0.51 12.98 7.70 87.66 0.67 13.66 16 8 O -0.59 -18.71 15.39 -3.05 -0.05 -18.75 16 9 N -0.61 -17.50 2.95 -817.21 -2.41 -19.91 16 10 C 0.10 3.35 6.59 86.42 0.57 3.92 16 11 C 0.13 4.89 6.67 86.42 0.58 5.47 16 12 N -0.61 -26.89 2.71 -697.41 -1.89 -28.78 16 13 C -0.27 -14.23 9.84 84.04 0.83 -13.40 16 14 H 0.05 2.83 8.05 -2.91 -0.02 2.81 16 15 C -0.01 -0.61 4.80 84.86 0.41 -0.20 16 16 N -0.93 -54.91 13.97 21.65 0.30 -54.61 16 17 Si 0.90 41.75 26.46 68.60 1.82 43.57 16 18 H -0.31 -14.86 7.11 99.48 0.71 -14.16 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.23 -9.78 4.99 99.48 0.50 -9.28 16 21 C 0.12 4.55 4.58 86.55 0.40 4.94 16 22 C 0.10 2.69 6.52 86.55 0.56 3.25 16 23 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 24 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 25 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.07 0.88 8.10 -2.38 -0.02 0.86 16 28 H 0.07 0.89 8.10 -2.39 -0.02 0.87 16 29 H 0.11 1.35 7.72 -2.39 -0.02 1.33 16 30 H 0.11 1.25 7.91 -2.39 -0.02 1.23 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.80 7.00 -2.39 -0.02 2.78 16 33 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.04 1.39 6.78 -2.39 -0.02 1.37 16 37 H 0.06 2.47 5.59 -2.39 -0.01 2.45 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.12 2.24 5.91 -2.39 -0.01 2.23 16 Total: -1.00 -73.16 319.18 4.95 -68.21 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 0.82 Total: 2.50 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 5.98 Total: 18.95 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -3.62 Total: -114.47 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.82 Total: 43.57 kcal Total: -73.16 4.95 -68.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594294725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.797 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds