Wall clock time and date at job start Mon Mar 30 2020 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 N 1.46496 * 109.47160 * 260.30726 * 8 7 6 10 10 C 1.34774 * 120.00271 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99799 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00235 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47218 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46965 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.46872 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99891 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99842 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99776 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99994 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47185 * 90.00087 * 19 17 15 21 21 H 1.48501 * 109.47296 * 210.00275 * 19 17 15 22 22 H 1.48505 * 109.47207 * 330.00416 * 19 17 15 23 23 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 24 24 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 25 25 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 26 26 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 27 27 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 28 28 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 29 29 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 30 30 H 1.09004 * 109.46922 * 20.30232 * 8 7 6 31 31 H 1.08998 * 109.47326 * 140.30662 * 8 7 6 32 32 H 0.97001 * 119.99640 * 359.97438 * 9 8 7 33 33 H 1.09008 * 109.47503 * 300.00413 * 12 10 9 34 34 H 1.09004 * 109.47244 * 60.00297 * 12 10 9 35 35 H 1.08993 * 109.47323 * 300.00156 * 13 12 10 36 36 H 1.09002 * 109.46761 * 60.00544 * 13 12 10 37 37 H 1.09002 * 109.46997 * 300.00273 * 14 13 12 38 38 H 1.08998 * 109.46987 * 60.00127 * 14 13 12 39 39 H 0.97004 * 119.99613 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 7 1.4800 -2.9554 -1.3608 10 6 1.0289 -4.2020 -1.6036 11 8 0.9370 -5.0011 -0.6959 12 6 0.6375 -4.6026 -3.0026 13 6 0.1633 -6.0573 -3.0028 14 6 -0.2335 -6.4642 -4.4234 15 6 -0.7012 -7.8968 -4.4234 16 1 -0.7146 -8.4604 -3.5023 17 6 -1.1120 -8.4878 -5.5994 18 7 -1.5207 -9.7378 -5.5993 19 14 -1.0895 -7.5126 -7.1924 20 1 0.2273 -7.6816 -7.8577 21 1 -2.1646 -8.0060 -8.0901 22 1 -1.3133 -6.0747 -6.8958 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 5.0836 1.7155 1.0262 27 1 5.6089 0.9983 -0.5158 28 1 4.5560 2.4334 -0.5147 29 1 4.4892 -1.3485 -0.0129 30 1 2.6655 -3.2107 0.3503 31 1 0.9990 -2.6673 0.6602 32 1 1.5531 -2.3161 -2.0867 33 1 -0.1686 -3.9580 -3.3532 34 1 1.4980 -4.5006 -3.6639 35 1 0.9689 -6.7022 -2.6521 36 1 -0.6974 -6.1588 -2.3416 37 1 -1.0391 -5.8193 -4.7745 38 1 0.6274 -6.3626 -5.0842 39 1 -1.8094 -10.1537 -6.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594337389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:14 Heat of formation + Delta-G solvation = 20.409325 kcal Electronic energy + Delta-G solvation = -19041.342292 eV Core-core repulsion = 15985.127857 eV Total energy + Delta-G solvation = -3056.214435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65265 -39.33434 -35.33208 -34.23018 -33.85923 -32.06556 -31.07825 -29.88769 -28.50657 -26.77036 -24.78861 -23.26257 -21.15665 -20.41926 -19.97251 -19.67972 -17.32069 -16.64663 -16.37005 -16.02058 -15.52587 -15.40568 -14.69103 -14.21448 -14.00588 -13.83381 -13.60305 -13.31443 -13.10346 -12.74885 -12.58746 -12.48383 -12.38224 -12.23098 -11.90997 -11.51507 -10.92615 -10.82565 -10.74142 -9.95996 -9.80641 -9.65236 -9.57957 -9.45762 -9.10480 -8.94932 -8.72034 -8.47572 -5.97337 -3.94743 1.48258 2.11557 2.27076 2.96721 3.34172 3.41253 3.44536 3.58533 4.07657 4.40655 4.50318 4.62655 4.69105 4.85166 4.94388 4.98861 5.12007 5.22584 5.36116 5.37494 5.62420 5.63669 5.66407 5.66727 5.73792 5.86861 6.18671 6.33194 6.52974 6.61163 6.62649 6.75570 6.98102 7.36407 7.43388 7.51083 7.67969 7.86901 8.50167 8.63339 9.09836 9.64937 11.16417 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035206 B = 0.002947 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.116806 B = 9500.106207 C = 9658.558735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.091 3.909 3 N -0.299 5.299 4 N -0.377 5.377 5 C 0.102 3.898 6 C 0.077 3.923 7 C -0.256 4.256 8 C 0.201 3.799 9 N -0.735 5.735 10 C 0.512 3.488 11 O -0.537 6.537 12 C -0.142 4.142 13 C -0.087 4.087 14 C -0.015 4.015 15 C -0.518 4.518 16 H 0.073 0.927 17 C 0.063 3.937 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.176 0.824 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.009 25.040 10.543 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 N -0.122 5.122 4 N -0.158 5.158 5 C -0.039 4.039 6 C -0.071 4.071 7 C -0.268 4.268 8 C 0.076 3.924 9 N -0.389 5.389 10 C 0.299 3.701 11 O -0.413 6.413 12 C -0.182 4.182 13 C -0.125 4.125 14 C -0.052 4.052 15 C -0.556 4.556 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.544 5.544 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.193 0.807 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.232 0.768 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.064 25.690 11.112 30.479 hybrid contribution 0.281 -0.062 -1.262 1.294 sum 12.345 25.628 9.850 30.103 Atomic orbital electron populations 1.20232 0.86382 1.03503 1.03365 1.22320 0.97042 0.90042 0.98192 1.77359 0.86303 1.22665 1.25836 1.48413 1.05724 1.04759 1.56910 1.21874 0.83530 0.95054 1.03457 1.22439 0.99305 0.84918 1.00399 1.20009 0.92029 0.95982 1.18761 1.19324 0.99855 0.88727 0.84454 1.46262 1.68263 1.14034 1.10309 1.21145 0.75991 0.80939 0.92005 1.90692 1.52991 1.50868 1.46793 1.21864 1.02497 1.01356 0.92436 1.21258 1.01018 0.90725 0.99510 1.19613 0.95836 0.97430 0.92346 1.21180 1.42689 0.95479 0.96213 0.90923 1.25058 0.94846 0.94781 0.99024 1.69928 1.44816 1.12231 1.27474 0.86758 0.77749 0.80990 0.83625 1.20397 1.21492 1.19022 0.90198 0.90095 0.90877 0.90673 0.89342 0.89237 0.80653 0.91262 0.90955 0.76819 0.89446 0.89542 0.92148 0.92065 0.96680 0.97151 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.26 36.00 0.37 -0.26 16 2 C 0.09 0.93 7.22 -82.40 -0.59 0.33 16 3 N -0.30 -3.30 12.57 33.67 0.42 -2.88 16 4 N -0.38 -3.21 4.01 -68.16 -0.27 -3.49 16 5 C 0.10 0.43 11.47 59.85 0.69 1.12 16 6 C 0.08 0.62 11.40 -17.22 -0.20 0.42 16 7 C -0.26 -2.45 5.47 -105.05 -0.57 -3.03 16 8 C 0.20 2.14 5.87 -5.20 -0.03 2.11 16 9 N -0.74 -8.40 5.55 -61.48 -0.34 -8.75 16 10 C 0.51 7.90 7.83 -10.99 -0.09 7.81 16 11 O -0.54 -10.55 15.98 5.56 0.09 -10.46 16 12 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 13 C -0.09 -1.82 4.44 -26.73 -0.12 -1.94 16 14 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 15 C -0.52 -15.24 9.66 -34.44 -0.33 -15.58 16 16 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 19 Si 0.88 21.92 27.47 -169.99 -4.67 17.26 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.64 7.50 -51.93 -0.39 0.25 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.82 7.60 -51.93 -0.39 0.43 16 32 H 0.40 3.75 8.46 -40.82 -0.35 3.40 16 33 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -36.59 333.15 -6.35 -42.94 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.13 Total: -1.80 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.25 Total: -10.05 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.58 Total: -42.92 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.59 -6.35 -42.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594337389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.351 kcal (2) G-P(sol) polarization free energy of solvation -36.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds