Wall clock time and date at job start Mon Mar 30 2020 04:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 N 1.46496 * 109.47160 * 260.30726 * 8 7 6 10 10 C 1.34774 * 120.00271 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99799 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00235 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47218 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46965 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.46872 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99891 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99842 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99776 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99994 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47185 * 90.00087 * 19 17 15 21 21 H 1.48501 * 109.47296 * 210.00275 * 19 17 15 22 22 H 1.48505 * 109.47207 * 330.00416 * 19 17 15 23 23 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 24 24 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 25 25 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 26 26 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 27 27 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 28 28 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 29 29 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 30 30 H 1.09004 * 109.46922 * 20.30232 * 8 7 6 31 31 H 1.08998 * 109.47326 * 140.30662 * 8 7 6 32 32 H 0.97001 * 119.99640 * 359.97438 * 9 8 7 33 33 H 1.09008 * 109.47503 * 300.00413 * 12 10 9 34 34 H 1.09004 * 109.47244 * 60.00297 * 12 10 9 35 35 H 1.08993 * 109.47323 * 300.00156 * 13 12 10 36 36 H 1.09002 * 109.46761 * 60.00544 * 13 12 10 37 37 H 1.09002 * 109.46997 * 300.00273 * 14 13 12 38 38 H 1.08998 * 109.46987 * 60.00127 * 14 13 12 39 39 H 0.97004 * 119.99613 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 7 1.4800 -2.9554 -1.3608 10 6 1.0289 -4.2020 -1.6036 11 8 0.9370 -5.0011 -0.6959 12 6 0.6375 -4.6026 -3.0026 13 6 0.1633 -6.0573 -3.0028 14 6 -0.2335 -6.4642 -4.4234 15 6 -0.7012 -7.8968 -4.4234 16 1 -0.7146 -8.4604 -3.5023 17 6 -1.1120 -8.4878 -5.5994 18 7 -1.5207 -9.7378 -5.5993 19 14 -1.0895 -7.5126 -7.1924 20 1 0.2273 -7.6816 -7.8577 21 1 -2.1646 -8.0060 -8.0901 22 1 -1.3133 -6.0747 -6.8958 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 5.0836 1.7155 1.0262 27 1 5.6089 0.9983 -0.5158 28 1 4.5560 2.4334 -0.5147 29 1 4.4892 -1.3485 -0.0129 30 1 2.6655 -3.2107 0.3503 31 1 0.9990 -2.6673 0.6602 32 1 1.5531 -2.3161 -2.0867 33 1 -0.1686 -3.9580 -3.3532 34 1 1.4980 -4.5006 -3.6639 35 1 0.9689 -6.7022 -2.6521 36 1 -0.6974 -6.1588 -2.3416 37 1 -1.0391 -5.8193 -4.7745 38 1 0.6274 -6.3626 -5.0842 39 1 -1.8094 -10.1537 -6.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594337389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:13 Heat of formation + Delta-G solvation = -6.108872 kcal Electronic energy + Delta-G solvation = -19042.492207 eV Core-core repulsion = 15985.127857 eV Total energy + Delta-G solvation = -3057.364351 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.31130 -40.55343 -36.39359 -35.91764 -34.59865 -34.08712 -31.94250 -30.55491 -30.02811 -27.68454 -25.79207 -24.70161 -22.06323 -21.81885 -21.14759 -20.56717 -18.92539 -18.04150 -17.39038 -16.84652 -16.71692 -16.28426 -16.14364 -15.55668 -15.03262 -14.82218 -14.55645 -14.35124 -14.31535 -13.89562 -13.75208 -13.59720 -13.14491 -13.00402 -12.95869 -12.88086 -12.64994 -12.43647 -11.75638 -11.69268 -11.52875 -11.44917 -11.28942 -10.83849 -10.72467 -10.22268 -9.98985 -9.44378 -8.25297 -6.30551 0.85695 1.40272 1.43839 1.51638 1.56043 1.62449 1.76686 2.41320 2.57462 3.09850 3.52295 3.85156 3.98019 4.14395 4.21214 4.26714 4.31578 4.42192 4.43302 4.44979 4.70224 4.72399 4.80389 4.91361 4.97331 5.00585 5.02068 5.07882 5.09159 5.12689 5.52016 5.62898 5.64968 5.66181 5.71446 6.07849 6.34030 6.67422 6.70705 6.78435 7.33507 7.38482 8.92391 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035206 B = 0.002947 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.116806 B = 9500.106207 C = 9658.558735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.081 3.919 3 N -0.334 5.334 4 N -0.378 5.378 5 C 0.093 3.907 6 C 0.088 3.912 7 C -0.273 4.273 8 C 0.206 3.794 9 N -0.712 5.712 10 C 0.513 3.487 11 O -0.589 6.589 12 C -0.132 4.132 13 C -0.081 4.081 14 C -0.010 4.010 15 C -0.539 4.539 16 H 0.020 0.980 17 C -0.004 4.004 18 N -0.958 5.958 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.236 1.236 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.207 0.793 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.412 0.588 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.577 28.092 8.905 32.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 N -0.158 5.158 4 N -0.158 5.158 5 C -0.047 4.047 6 C -0.061 4.061 7 C -0.285 4.285 8 C 0.082 3.918 9 N -0.365 5.365 10 C 0.302 3.698 11 O -0.469 6.469 12 C -0.171 4.171 13 C -0.119 4.119 14 C -0.047 4.047 15 C -0.577 4.577 16 H 0.038 0.962 17 C -0.200 4.200 18 N -0.598 5.598 19 Si 0.784 3.216 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.159 1.159 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.134 0.866 28 H 0.108 0.892 29 H 0.224 0.776 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.657 28.821 9.482 33.273 hybrid contribution -0.153 -1.041 -0.635 1.229 sum 13.505 27.780 8.847 32.131 Atomic orbital electron populations 1.20265 0.85727 1.03620 1.03830 1.22584 0.97768 0.90170 0.98021 1.77304 0.87727 1.23513 1.27211 1.48768 1.05814 1.05442 1.55803 1.22220 0.82799 0.94985 1.04681 1.22912 0.99769 0.85105 0.98323 1.19901 0.92794 0.94969 1.20809 1.19250 0.99412 0.89583 0.83512 1.46064 1.66302 1.12795 1.11309 1.21087 0.75775 0.81597 0.91386 1.90687 1.55502 1.52602 1.48104 1.21716 1.04471 0.97635 0.93286 1.21040 0.99409 0.94386 0.97061 1.19556 0.96640 0.93973 0.94551 1.21578 1.43306 0.98222 0.94567 0.96188 1.26202 0.94021 0.95966 1.03825 1.70112 1.46140 1.14637 1.28958 0.85492 0.78302 0.80428 0.77368 1.18921 1.21301 1.15881 0.89497 0.90158 0.90582 0.89547 0.86562 0.89195 0.77583 0.91353 0.92018 0.75163 0.86719 0.86666 0.94475 0.94494 0.95193 0.95302 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.26 71.24 0.73 -0.45 16 2 C 0.08 1.55 7.22 43.10 0.31 1.86 16 3 N -0.33 -6.92 12.57 -47.38 -0.60 -7.51 16 4 N -0.38 -5.55 4.01 -369.56 -1.48 -7.03 16 5 C 0.09 0.53 11.47 127.77 1.47 2.00 16 6 C 0.09 1.17 11.40 83.54 0.95 2.12 16 7 C -0.27 -4.73 5.47 -20.14 -0.11 -4.84 16 8 C 0.21 4.12 5.87 85.63 0.50 4.62 16 9 N -0.71 -14.73 5.55 -466.80 -2.59 -17.32 16 10 C 0.51 15.13 7.83 87.66 0.69 15.82 16 11 O -0.59 -23.32 15.98 -3.03 -0.05 -23.37 16 12 C -0.13 -3.75 5.70 29.85 0.17 -3.58 16 13 C -0.08 -3.37 4.44 30.60 0.14 -3.24 16 14 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 15 C -0.54 -32.56 9.66 25.60 0.25 -32.32 16 16 H 0.02 1.36 7.99 -2.91 -0.02 1.33 16 17 C 0.00 -0.27 5.47 84.65 0.46 0.20 16 18 N -0.96 -62.15 13.96 21.45 0.30 -61.85 16 19 Si 0.96 44.15 27.47 68.60 1.88 46.03 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.22 7.50 -2.39 -0.02 1.21 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.06 1.38 7.60 -2.39 -0.02 1.36 16 32 H 0.41 6.43 8.46 -92.71 -0.78 5.64 16 33 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 37 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 38 H 0.03 1.25 7.57 -2.39 -0.02 1.24 16 39 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -82.99 333.15 3.34 -79.65 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.20 Total: 9.54 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 5.68 Total: -18.14 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -4.37 Total: -93.72 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -82.99 3.34 -79.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594337389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.545 kcal (2) G-P(sol) polarization free energy of solvation -82.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds