Wall clock time and date at job start Mon Mar 30 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.50700 * 109.47294 * 120.00379 * 2 1 3 5 5 C 1.35124 * 125.55485 * 145.00236 * 4 2 1 6 6 C 1.40981 * 108.24023 * 179.97438 * 5 4 2 7 7 N 1.33304 * 126.35490 * 179.97438 * 6 5 4 8 8 C 1.32911 * 119.99643 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00466 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99504 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.46925 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47340 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47232 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99963 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99795 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46921 * 90.00726 * 17 15 13 19 19 H 1.48500 * 109.46784 * 210.00320 * 17 15 13 20 20 H 1.48494 * 109.47628 * 330.00590 * 17 15 13 21 21 N 1.37285 * 107.28522 * 0.22080 * 6 5 4 22 22 H 0.97006 * 126.34631 * 179.74695 * 21 6 5 23 23 N 1.36337 * 125.54517 * 324.97073 * 4 2 1 24 24 H 0.97000 * 125.86698 * 0.02562 * 23 4 2 25 25 H 1.08998 * 109.46956 * 299.99840 * 1 2 3 26 26 H 1.09001 * 109.47187 * 60.00022 * 1 2 3 27 27 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46956 * 240.00160 * 2 1 3 29 29 H 1.08998 * 109.47089 * 60.00242 * 3 2 1 30 30 H 1.09003 * 109.47035 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47086 * 300.00040 * 3 2 1 32 32 H 1.07995 * 125.87674 * 359.95355 * 5 4 2 33 33 H 1.09000 * 109.47318 * 299.99132 * 10 8 7 34 34 H 1.09000 * 109.47161 * 59.99763 * 10 8 7 35 35 H 1.09004 * 109.46930 * 299.99901 * 11 10 8 36 36 H 1.09004 * 109.47059 * 59.99503 * 11 10 8 37 37 H 1.09004 * 109.46785 * 299.99692 * 12 11 10 38 38 H 1.09000 * 109.47196 * 59.99588 * 12 11 10 39 39 H 0.97002 * 119.99803 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 3.1433 -1.4768 1.2966 6 6 3.2683 -1.9598 2.6152 7 7 4.2361 -2.7507 3.0787 8 6 4.2303 -3.1315 4.3521 9 8 3.3427 -2.7580 5.0944 10 6 5.3241 -4.0261 4.8759 11 6 5.0831 -4.3112 6.3597 12 6 6.1938 -5.2190 6.8917 13 6 5.9567 -5.4992 8.3533 14 1 5.0992 -5.0728 8.8527 15 6 6.8339 -6.3008 9.0527 16 7 7.8777 -6.8203 8.4444 17 14 6.5403 -6.6475 10.8646 18 1 5.7033 -7.8660 11.0060 19 1 7.8429 -6.8601 11.5452 20 1 5.8414 -5.4924 11.4828 21 7 2.2052 -1.4688 3.3319 22 1 2.0190 -1.6333 4.2696 23 7 1.4402 -0.6842 2.4582 24 1 0.6271 -0.2072 2.6869 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 3.8189 -1.6839 0.4800 33 1 5.3235 -4.9641 4.3207 34 1 6.2878 -3.5319 4.7531 35 1 5.0840 -3.3730 6.9147 36 1 4.1193 -4.8052 6.4828 37 1 6.1933 -6.1571 6.3367 38 1 7.1574 -4.7245 6.7685 39 1 8.4950 -7.3840 8.9365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594369768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:05 Heat of formation + Delta-G solvation = 32.745062 kcal Electronic energy + Delta-G solvation = -19079.070662 eV Core-core repulsion = 16023.391145 eV Total energy + Delta-G solvation = -3055.679518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.80638 -38.95771 -36.27254 -34.11604 -33.55104 -31.86278 -31.05647 -30.00746 -27.86204 -27.53010 -24.44181 -23.59351 -21.45531 -21.18189 -19.72717 -19.33655 -18.26701 -16.25902 -16.04204 -15.74979 -15.53576 -15.36509 -14.75092 -14.53005 -14.29156 -13.99975 -13.62438 -13.47580 -13.02083 -12.85294 -12.17078 -12.02548 -11.89894 -11.67966 -11.57056 -11.17164 -10.83008 -10.63606 -10.52333 -10.42915 -10.08697 -9.76317 -9.45900 -9.17927 -8.99959 -8.72887 -8.20406 -7.75165 -5.86063 -3.86984 0.91570 1.48541 2.21324 3.41210 3.46322 3.51300 3.64743 3.80038 3.99603 4.16492 4.38389 4.51079 4.59675 4.74550 4.92086 4.98811 5.13690 5.17056 5.32089 5.40574 5.49212 5.56493 5.60695 5.75907 5.98956 6.13934 6.21620 6.43893 6.60144 6.83564 6.98664 7.18016 7.34309 7.48245 7.85007 7.87698 8.02963 8.16935 8.60957 8.98622 9.20375 9.75752 11.25530 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.063632 B = 0.002716 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.925856 B =10307.709236 C =10572.754601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.037 4.037 3 C -0.148 4.148 4 C 0.182 3.818 5 C -0.263 4.263 6 C 0.477 3.523 7 N -0.645 5.645 8 C 0.488 3.512 9 O -0.596 6.596 10 C -0.116 4.116 11 C -0.096 4.096 12 C 0.019 3.981 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 N -0.486 5.486 22 H 0.456 0.544 23 N -0.491 5.491 24 H 0.441 0.559 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.170 0.830 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.465 18.036 -22.193 32.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.057 4.057 3 C -0.206 4.206 4 C 0.060 3.940 5 C -0.294 4.294 6 C 0.225 3.775 7 N -0.405 5.405 8 C 0.278 3.722 9 O -0.478 6.478 10 C -0.156 4.156 11 C -0.134 4.134 12 C -0.018 4.018 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 N -0.227 5.227 22 H 0.315 0.685 23 N -0.208 5.208 24 H 0.287 0.713 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.129 0.871 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.188 0.812 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.308 17.786 -21.690 32.446 hybrid contribution -1.009 0.020 2.108 2.337 sum -17.317 17.806 -19.582 31.629 Atomic orbital electron populations 1.21932 0.93699 1.02920 1.02829 1.20107 0.96429 0.96423 0.92764 1.21890 1.02428 0.93632 1.02649 1.21028 0.92407 0.94895 0.85660 1.20583 1.02557 1.09493 0.96732 1.20971 0.80635 0.84956 0.90912 1.70107 1.25093 1.26679 1.18665 1.21934 0.86177 0.80285 0.83779 1.90299 1.38625 1.56556 1.62370 1.21429 0.96688 0.98669 0.98773 1.21440 1.00511 1.00282 0.91132 1.19136 0.93031 0.94166 0.95430 1.21303 1.09364 1.29260 0.95411 0.92760 1.25034 0.95285 0.96106 0.98219 1.69977 1.13799 1.33742 1.36199 0.86605 0.77370 0.78564 0.85526 1.20751 1.21284 1.19965 1.47429 1.21279 1.43174 1.10862 0.68548 1.44178 1.25163 1.46307 1.05201 0.71335 0.92711 0.90842 0.91651 0.87107 0.92456 0.91278 0.91119 0.81211 0.89500 0.89504 0.93268 0.93269 0.96577 0.96565 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.30 8.94 37.16 0.33 0.03 16 2 C -0.04 -0.11 3.29 -91.77 -0.30 -0.41 16 3 C -0.15 -0.40 9.18 37.16 0.34 -0.05 16 4 C 0.18 1.20 5.90 -81.70 -0.48 0.72 16 5 C -0.26 -2.61 10.71 -39.65 -0.42 -3.03 16 6 C 0.48 6.88 7.72 -155.19 -1.20 5.69 16 7 N -0.65 -11.72 10.51 -11.59 -0.12 -11.84 16 8 C 0.49 10.05 7.71 -11.81 -0.09 9.96 16 9 O -0.60 -12.81 13.33 5.29 0.07 -12.74 16 10 C -0.12 -2.47 5.78 -27.88 -0.16 -2.63 16 11 C -0.10 -2.35 4.44 -26.73 -0.12 -2.47 16 12 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 13 C -0.51 -15.85 9.11 -34.44 -0.31 -16.16 16 14 H 0.05 1.64 7.74 -52.48 -0.41 1.24 16 15 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -28.44 13.29 55.43 0.74 -27.70 16 17 Si 0.89 22.96 29.54 -169.99 -5.02 17.94 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 21 N -0.49 -5.93 7.04 31.32 0.22 -5.71 16 22 H 0.46 6.23 6.36 -182.55 -1.16 5.07 16 23 N -0.49 -3.49 7.16 33.68 0.24 -3.25 16 24 H 0.44 1.62 8.14 -182.55 -1.49 0.13 16 25 H 0.05 0.07 7.41 -51.93 -0.38 -0.31 16 26 H 0.07 0.08 8.14 -51.93 -0.42 -0.35 16 27 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.05 1.24 8.10 -51.93 -0.42 0.81 16 36 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -37.89 329.02 -9.63 -47.52 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.06 Total: -2.78 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.65 Total: -6.40 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 1.08 Total: -48.50 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.89 -9.63 -47.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594369768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.268 kcal (2) G-P(sol) polarization free energy of solvation -37.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds