Wall clock time and date at job start Mon Mar 30 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36028 * 116.99623 * 2 1 4 4 C 1.36057 * 121.00886 * 90.00220 * 3 2 1 5 5 C 1.50704 * 119.87222 * 359.74314 * 4 3 2 6 6 N 1.33833 * 120.26077 * 180.02562 * 4 3 2 7 7 C 1.30084 * 122.71100 * 359.97438 * 6 4 3 8 8 N 1.35825 * 122.12660 * 0.02562 * 7 6 4 9 9 H 0.97000 * 120.34859 * 179.97438 * 8 7 6 10 10 C 1.38032 * 119.30807 * 359.97438 * 8 7 6 11 11 N 1.31486 * 121.19484 * 180.02562 * 10 8 7 12 12 C 1.46496 * 120.00358 * 354.00728 * 11 10 8 13 13 C 1.52999 * 109.47168 * 114.61125 * 12 11 10 14 14 C 1.52998 * 109.47577 * 300.00819 * 13 12 11 15 15 C 1.52999 * 109.46744 * 60.00698 * 13 12 11 16 16 C 1.50698 * 109.47223 * 180.02562 * 13 12 11 17 17 H 1.07997 * 120.00029 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99776 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00413 * 0.02562 * 18 16 13 20 20 Si 1.86808 * 119.99602 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47235 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46918 * 120.00289 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00031 * 20 18 16 24 24 H 1.08995 * 109.47384 * 299.99725 * 1 2 3 25 25 H 1.08991 * 109.47061 * 60.00369 * 1 2 3 26 26 H 1.09011 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47090 * 90.00052 * 5 4 3 28 28 H 1.09004 * 109.46770 * 210.00433 * 5 4 3 29 29 H 1.09001 * 109.47163 * 329.99830 * 5 4 3 30 30 H 1.07995 * 118.93681 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47782 * 234.61817 * 12 11 10 32 32 H 1.09003 * 109.46937 * 354.62025 * 12 11 10 33 33 H 1.09003 * 109.46965 * 59.99387 * 14 13 12 34 34 H 1.08995 * 109.47574 * 179.97438 * 14 13 12 35 35 H 1.09003 * 109.47052 * 299.99421 * 14 13 12 36 36 H 1.08999 * 109.47393 * 59.99703 * 15 13 12 37 37 H 1.09000 * 109.47520 * 180.02562 * 15 13 12 38 38 H 1.08999 * 109.47436 * 299.99520 * 15 13 12 39 39 H 0.96992 * 120.00109 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 2.3647 1.8366 1.1661 5 6 2.0267 1.1858 2.4827 6 7 2.9717 3.0292 1.1487 7 6 3.2843 3.6429 0.0450 8 7 3.0148 3.1140 -1.1767 9 1 3.2590 3.5943 -1.9833 10 6 2.3898 1.8860 -1.2585 11 7 2.1119 1.3395 -2.4216 12 6 2.3454 2.0897 -3.6581 13 6 3.4421 1.4012 -4.4730 14 6 4.7331 1.3541 -3.6534 15 6 3.0037 -0.0239 -4.8163 16 6 3.6827 2.1732 -5.7446 17 1 3.1109 3.0660 -5.9507 18 6 4.6328 1.7399 -6.6449 19 7 5.3288 0.6525 -6.3942 20 14 4.9316 2.6974 -8.2208 21 1 4.0264 3.8738 -8.2645 22 1 6.3429 3.1575 -8.2604 23 1 4.6633 1.8222 -9.3901 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 2.8590 0.5589 2.8024 28 1 1.8429 1.9558 3.2320 29 1 1.1335 0.5720 2.3659 30 1 3.7738 4.6038 0.1020 31 1 1.4256 2.1232 -4.2420 32 1 2.6577 3.1050 -3.4135 33 1 4.5593 0.7959 -2.7334 34 1 5.5143 0.8632 -4.2338 35 1 5.0455 2.3694 -3.4089 36 1 2.0839 0.0096 -5.4002 37 1 3.7851 -0.5147 -5.3965 38 1 2.8299 -0.5822 -3.8964 39 1 5.9969 0.3475 -7.0277 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594585246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:53 Heat of formation + Delta-G solvation = 21.867595 kcal Electronic energy + Delta-G solvation = -20717.346345 eV Core-core repulsion = 17661.195145 eV Total energy + Delta-G solvation = -3056.151200 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.67601 -37.96051 -36.82170 -34.84396 -32.90435 -31.27223 -30.05369 -28.41286 -26.57429 -25.57289 -25.28518 -24.59111 -23.44641 -21.17954 -18.75319 -18.69866 -17.62359 -16.79075 -15.92093 -15.63932 -15.17971 -14.77586 -14.50012 -14.23417 -13.84638 -13.35872 -13.09216 -12.93981 -12.38015 -12.27396 -12.14802 -11.63492 -11.51756 -11.19895 -10.95264 -10.77066 -10.65334 -10.46299 -10.27373 -10.13602 -9.84007 -9.49431 -9.42737 -9.14509 -8.97258 -8.50086 -8.32320 -7.07247 -5.95729 -4.08336 0.89589 2.23677 3.05116 3.26094 3.34747 3.37173 3.55465 4.04972 4.20828 4.37718 4.48140 4.98374 5.28766 5.29063 5.49428 5.54406 5.59353 5.61533 5.69638 5.80246 5.93733 6.03944 6.19945 6.43953 6.55251 6.71440 6.82359 7.09700 7.13673 7.18375 7.39404 7.47307 7.60725 7.70337 7.75180 8.10813 8.12328 8.27151 8.44937 8.58191 8.93640 9.57272 11.04209 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031822 B = 0.005037 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.686166 B = 5557.508707 C = 5993.985929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.302 6.302 3 C 0.024 3.976 4 C 0.111 3.889 5 C -0.093 4.093 6 N -0.553 5.553 7 C 0.379 3.621 8 N -0.657 5.657 9 H 0.420 0.580 10 C 0.345 3.655 11 N -0.530 5.530 12 C 0.062 3.938 13 C 0.074 3.926 14 C -0.126 4.126 15 C -0.120 4.120 16 C -0.511 4.511 17 H 0.053 0.947 18 C 0.066 3.934 19 N -0.882 5.882 20 Si 0.890 3.110 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.196 0.804 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.010 0.990 34 H 0.083 0.917 35 H 0.013 0.987 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.020 0.980 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 4.338 14.542 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.215 6.215 3 C -0.029 4.029 4 C -0.005 4.005 5 C -0.150 4.150 6 N -0.279 5.279 7 C 0.090 3.910 8 N -0.290 5.290 9 H 0.261 0.739 10 C 0.072 3.928 11 N -0.253 5.253 12 C -0.067 4.067 13 C 0.073 3.927 14 C -0.184 4.184 15 C -0.178 4.178 16 C -0.550 4.550 17 H 0.071 0.929 18 C -0.135 4.135 19 N -0.521 5.521 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.212 0.788 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.029 0.971 34 H 0.102 0.898 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.271 3.331 14.785 16.402 hybrid contribution 0.411 1.391 -2.203 2.638 sum -5.861 4.722 12.583 14.662 Atomic orbital electron populations 1.22959 0.80007 1.02831 1.00170 1.86128 1.19155 1.22885 1.93353 1.19351 1.05217 0.89899 0.88394 1.20908 0.95024 0.89710 0.94879 1.20551 1.02138 0.99954 0.92354 1.67720 1.22434 1.11265 1.26442 1.24686 0.89442 0.96881 0.79948 1.44469 1.53998 1.20489 1.10094 0.73864 1.21768 0.93923 0.82241 0.94844 1.73210 1.25413 1.29969 0.96731 1.22305 1.00812 0.93722 0.89891 1.18126 0.89046 0.93383 0.92101 1.21776 1.01696 0.97635 0.97281 1.21636 0.99761 0.97908 0.98449 1.21131 1.20114 1.10214 1.03523 0.92898 1.24902 0.95764 0.94950 0.97889 1.69854 1.23901 1.22530 1.35773 0.86580 0.77876 0.80036 0.83717 1.19936 1.21117 1.21014 0.94333 0.93319 0.89092 0.90322 0.90762 0.90906 0.78755 0.91113 0.96695 0.97130 0.89843 0.96822 0.96212 0.90578 0.96052 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.77 101.05 1.09 1.53 16 2 O -0.30 -4.98 9.58 -19.83 -0.19 -5.17 16 3 C 0.02 0.39 5.93 -36.89 -0.22 0.17 16 4 C 0.11 1.58 6.78 -82.50 -0.56 1.02 16 5 C -0.09 -1.01 9.96 36.01 0.36 -0.65 16 6 N -0.55 -7.35 10.23 -10.53 -0.11 -7.46 16 7 C 0.38 4.35 12.36 -90.00 -1.11 3.24 16 8 N -0.66 -9.44 5.30 -11.77 -0.06 -9.50 16 9 H 0.42 5.81 6.44 -40.82 -0.26 5.54 16 10 C 0.34 6.19 7.50 -153.59 -1.15 5.04 16 11 N -0.53 -11.04 9.01 -58.55 -0.53 -11.57 16 12 C 0.06 1.35 5.13 -4.04 -0.02 1.32 16 13 C 0.07 1.85 0.57 -155.66 -0.09 1.77 16 14 C -0.13 -3.13 8.09 37.16 0.30 -2.83 16 15 C -0.12 -3.11 8.09 37.16 0.30 -2.81 16 16 C -0.51 -13.72 8.01 -34.44 -0.28 -13.99 16 17 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 18 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 19 N -0.88 -24.72 9.36 55.43 0.52 -24.20 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H 0.04 0.40 7.24 -51.93 -0.38 0.02 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.73 6.31 -51.93 -0.33 0.40 16 30 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.01 0.29 5.61 -51.93 -0.29 0.00 16 33 H 0.01 0.24 7.45 -51.93 -0.39 -0.15 16 34 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 38 H 0.02 0.53 7.60 -51.93 -0.39 0.14 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -31.84 316.57 -7.68 -39.53 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.59 Total: 2.16 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.47 Total: -4.49 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.18 Total: -52.72 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.19 Total: -5.17 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.84 -7.68 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594585246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.394 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds