Wall clock time and date at job start Mon Mar 30 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36028 * 116.99623 * 2 1 4 4 C 1.36057 * 121.00886 * 90.00220 * 3 2 1 5 5 C 1.50704 * 119.87222 * 359.74314 * 4 3 2 6 6 N 1.33833 * 120.26077 * 180.02562 * 4 3 2 7 7 C 1.30084 * 122.71100 * 359.97438 * 6 4 3 8 8 N 1.35825 * 122.12660 * 0.02562 * 7 6 4 9 9 H 0.97000 * 120.34859 * 179.97438 * 8 7 6 10 10 C 1.38032 * 119.30807 * 359.97438 * 8 7 6 11 11 N 1.31486 * 121.19484 * 180.02562 * 10 8 7 12 12 C 1.46496 * 120.00358 * 354.00728 * 11 10 8 13 13 C 1.52999 * 109.47168 * 114.61125 * 12 11 10 14 14 C 1.52998 * 109.47577 * 300.00819 * 13 12 11 15 15 C 1.52999 * 109.46744 * 60.00698 * 13 12 11 16 16 C 1.50698 * 109.47223 * 180.02562 * 13 12 11 17 17 H 1.07997 * 120.00029 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99776 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00413 * 0.02562 * 18 16 13 20 20 Si 1.86808 * 119.99602 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47235 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46918 * 120.00289 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00031 * 20 18 16 24 24 H 1.08995 * 109.47384 * 299.99725 * 1 2 3 25 25 H 1.08991 * 109.47061 * 60.00369 * 1 2 3 26 26 H 1.09011 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47090 * 90.00052 * 5 4 3 28 28 H 1.09004 * 109.46770 * 210.00433 * 5 4 3 29 29 H 1.09001 * 109.47163 * 329.99830 * 5 4 3 30 30 H 1.07995 * 118.93681 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47782 * 234.61817 * 12 11 10 32 32 H 1.09003 * 109.46937 * 354.62025 * 12 11 10 33 33 H 1.09003 * 109.46965 * 59.99387 * 14 13 12 34 34 H 1.08995 * 109.47574 * 179.97438 * 14 13 12 35 35 H 1.09003 * 109.47052 * 299.99421 * 14 13 12 36 36 H 1.08999 * 109.47393 * 59.99703 * 15 13 12 37 37 H 1.09000 * 109.47520 * 180.02562 * 15 13 12 38 38 H 1.08999 * 109.47436 * 299.99520 * 15 13 12 39 39 H 0.96992 * 120.00109 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 2.3647 1.8366 1.1661 5 6 2.0267 1.1858 2.4827 6 7 2.9717 3.0292 1.1487 7 6 3.2843 3.6429 0.0450 8 7 3.0148 3.1140 -1.1767 9 1 3.2590 3.5943 -1.9833 10 6 2.3898 1.8860 -1.2585 11 7 2.1119 1.3395 -2.4216 12 6 2.3454 2.0897 -3.6581 13 6 3.4421 1.4012 -4.4730 14 6 4.7331 1.3541 -3.6534 15 6 3.0037 -0.0239 -4.8163 16 6 3.6827 2.1732 -5.7446 17 1 3.1109 3.0660 -5.9507 18 6 4.6328 1.7399 -6.6449 19 7 5.3288 0.6525 -6.3942 20 14 4.9316 2.6974 -8.2208 21 1 4.0264 3.8738 -8.2645 22 1 6.3429 3.1575 -8.2604 23 1 4.6633 1.8222 -9.3901 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 2.8590 0.5589 2.8024 28 1 1.8429 1.9558 3.2320 29 1 1.1335 0.5720 2.3659 30 1 3.7738 4.6038 0.1020 31 1 1.4256 2.1232 -4.2420 32 1 2.6577 3.1050 -3.4135 33 1 4.5593 0.7959 -2.7334 34 1 5.5143 0.8632 -4.2338 35 1 5.0455 2.3694 -3.4089 36 1 2.0839 0.0096 -5.4002 37 1 3.7851 -0.5147 -5.3965 38 1 2.8299 -0.5822 -3.8964 39 1 5.9969 0.3475 -7.0277 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594585246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:53 Heat of formation + Delta-G solvation = 2.010616 kcal Electronic energy + Delta-G solvation = -20718.207408 eV Core-core repulsion = 17661.195145 eV Total energy + Delta-G solvation = -3057.012263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83735 -39.11210 -38.43956 -36.33743 -34.30499 -33.00719 -31.29333 -29.57750 -27.78171 -27.59852 -27.27777 -26.09302 -24.51631 -22.54234 -20.45945 -19.90331 -18.85634 -18.10521 -17.76260 -16.88655 -16.62989 -16.27395 -15.77626 -15.42345 -15.11945 -14.95981 -14.68690 -14.20639 -13.95836 -13.55118 -13.36583 -13.15249 -13.06777 -12.76430 -12.61841 -12.52435 -12.35195 -12.23373 -12.13437 -11.62561 -11.44528 -11.31250 -10.86722 -10.68021 -10.48821 -10.42720 -10.10995 -8.39096 -7.99533 -6.20529 -0.17736 0.99015 1.40293 1.43392 1.53187 1.89872 2.42133 2.45718 2.92892 3.20968 3.23580 3.32919 4.04973 4.22631 4.35421 4.46786 4.52519 4.61618 4.62460 4.66676 4.73444 4.77924 4.84193 4.86509 4.95826 5.08879 5.13724 5.29976 5.32202 5.42833 5.47806 5.61319 5.65213 6.03267 6.05006 6.22558 6.40969 6.49871 6.86894 7.03388 7.21556 7.48448 8.97797 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031822 B = 0.005037 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.686166 B = 5557.508707 C = 5993.985929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.322 6.322 3 C -0.022 4.022 4 C 0.132 3.868 5 C -0.093 4.093 6 N -0.563 5.563 7 C 0.391 3.609 8 N -0.655 5.655 9 H 0.423 0.577 10 C 0.353 3.647 11 N -0.582 5.582 12 C 0.077 3.923 13 C 0.066 3.934 14 C -0.106 4.106 15 C -0.105 4.105 16 C -0.525 4.525 17 H 0.053 0.947 18 C 0.021 3.979 19 N -0.907 5.907 20 Si 0.952 3.048 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.286 1.286 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.252 0.748 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.005 0.995 34 H 0.054 0.946 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.051 0.949 38 H 0.017 0.983 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 6.278 16.223 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.236 6.236 3 C -0.074 4.074 4 C 0.014 3.986 5 C -0.150 4.150 6 N -0.288 5.288 7 C 0.105 3.895 8 N -0.287 5.287 9 H 0.265 0.735 10 C 0.081 3.919 11 N -0.308 5.308 12 C -0.052 4.052 13 C 0.065 3.935 14 C -0.163 4.163 15 C -0.163 4.163 16 C -0.564 4.564 17 H 0.071 0.929 18 C -0.178 4.178 19 N -0.546 5.546 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.212 1.212 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.126 0.874 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.267 0.733 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.180 5.311 16.491 18.395 hybrid contribution 0.394 0.845 -2.527 2.694 sum -5.785 6.156 13.964 16.321 Atomic orbital electron populations 1.23107 0.78691 1.04068 1.00302 1.86097 1.20758 1.23359 1.93356 1.19521 1.08356 0.91120 0.88447 1.21431 0.92341 0.89377 0.95406 1.20674 1.02782 1.00543 0.90992 1.67874 1.22896 1.11009 1.27005 1.25849 0.87450 0.97924 0.78306 1.44592 1.53177 1.19457 1.11487 0.73518 1.22183 0.91929 0.82955 0.94786 1.73210 1.29604 1.31030 0.96929 1.21903 0.98669 0.94257 0.90407 1.18154 0.90344 0.92673 0.92355 1.21518 1.00694 0.97743 0.96385 1.21466 0.98400 0.98867 0.97570 1.21417 1.20097 1.10389 1.04475 0.92870 1.25632 0.95635 0.95772 1.00802 1.70002 1.24257 1.23728 1.36653 0.85599 0.77843 0.78848 0.79852 1.19104 1.20681 1.21211 0.91963 0.95306 0.87377 0.89530 0.88950 0.90060 0.73275 0.92781 0.95102 0.97556 0.92728 0.95632 0.96861 0.93041 0.96413 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.77 113.37 1.22 2.03 16 2 O -0.32 -10.53 9.58 -93.87 -0.90 -11.43 16 3 C -0.02 -0.71 5.93 24.01 0.14 -0.56 16 4 C 0.13 3.44 6.78 41.75 0.28 3.72 16 5 C -0.09 -1.76 9.96 71.24 0.71 -1.05 16 6 N -0.56 -13.05 10.23 -187.22 -1.92 -14.96 16 7 C 0.39 7.54 12.36 180.13 2.23 9.77 16 8 N -0.66 -17.43 5.30 -191.15 -1.01 -18.44 16 9 H 0.42 10.79 6.44 -92.71 -0.60 10.19 16 10 C 0.35 12.44 7.50 135.70 1.02 13.46 16 11 N -0.58 -24.55 9.01 -339.14 -3.05 -27.60 16 12 C 0.08 3.39 5.13 86.38 0.44 3.83 16 13 C 0.07 3.32 0.57 -52.93 -0.03 3.29 16 14 C -0.11 -5.29 8.09 71.98 0.58 -4.70 16 15 C -0.11 -5.65 8.09 71.98 0.58 -5.07 16 16 C -0.53 -28.31 8.01 25.60 0.21 -28.11 16 17 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 18 C 0.02 1.12 5.15 84.65 0.44 1.55 16 19 N -0.91 -51.72 9.36 21.45 0.20 -51.52 16 20 Si 0.95 42.98 29.54 68.60 2.03 45.00 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 24 H 0.06 1.20 7.24 -2.39 -0.02 1.18 16 25 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.08 1.42 6.31 -2.39 -0.02 1.40 16 30 H 0.25 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.03 1.20 5.61 -2.39 -0.01 1.19 16 33 H 0.01 0.27 7.45 -2.39 -0.02 0.26 16 34 H 0.05 3.04 6.07 -2.39 -0.01 3.03 16 35 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 2.98 6.07 -2.39 -0.01 2.97 16 38 H 0.02 0.91 7.60 -2.39 -0.02 0.89 16 39 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -70.09 316.57 3.62 -66.47 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.46 Total: 14.33 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 7.82 Total: -1.85 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -5.78 Total: -112.53 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.90 Total: -11.43 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.09 3.62 -66.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594585246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.477 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds