Wall clock time and date at job start Mon Mar 30 2020 04:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47196 * 110.63909 * 2 1 4 4 N 2.60796 * 110.63812 * 359.97438 * 2 1 3 5 5 C 1.55448 * 110.70895 * 236.69261 * 2 1 3 6 6 C 1.54905 * 101.45165 * 206.14261 * 5 2 1 7 7 N 1.47419 * 104.92834 * 37.00468 * 6 5 2 8 8 C 1.34780 * 125.65139 * 155.80015 * 7 6 5 9 9 O 1.21584 * 120.00061 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99751 * 0.02562 * 8 7 6 11 11 C 1.46493 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47053 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46933 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47015 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99842 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00364 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99730 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47385 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47176 * 119.99907 * 18 16 14 21 21 H 1.48500 * 109.46570 * 239.99169 * 18 16 14 22 22 C 1.47026 * 108.70576 * 335.81449 * 7 6 5 23 23 H 1.08997 * 109.47158 * 298.30431 * 1 2 3 24 24 H 1.09000 * 109.47219 * 58.31337 * 1 2 3 25 25 H 1.09003 * 109.46682 * 178.31379 * 1 2 3 26 26 H 1.09002 * 111.11560 * 88.08576 * 5 2 1 27 27 H 1.09004 * 111.00873 * 324.14985 * 5 2 1 28 28 H 1.09002 * 110.36692 * 278.10842 * 6 5 2 29 29 H 1.08995 * 110.36664 * 155.89643 * 6 5 2 30 30 H 0.97003 * 119.99602 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.46814 * 300.00086 * 11 10 8 32 32 H 1.08994 * 109.47723 * 60.00013 * 11 10 8 33 33 H 1.09003 * 109.46985 * 299.99496 * 12 11 10 34 34 H 1.08992 * 109.47816 * 59.99727 * 12 11 10 35 35 H 1.08992 * 109.47435 * 299.99659 * 13 12 11 36 36 H 1.09001 * 109.47148 * 59.99938 * 13 12 11 37 37 H 0.97001 * 120.00600 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.88266 * 120.47537 * 22 7 6 39 39 H 1.09000 * 109.88221 * 241.64354 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.3775 0.0000 4 7 2.4492 2.4406 -0.0011 5 6 2.0797 -0.7985 -1.2152 6 6 3.4633 -1.2508 -0.6855 7 7 3.2446 -1.5494 0.7415 8 6 3.9918 -2.3818 1.4934 9 8 3.7175 -2.5536 2.6654 10 7 5.0430 -3.0237 0.9461 11 6 5.8548 -3.9288 1.7632 12 6 6.9754 -4.5221 0.9069 13 6 7.8237 -5.4669 1.7605 14 6 8.9271 -6.0518 0.9169 15 1 9.0143 -5.7774 -0.1240 16 6 9.8246 -6.9380 1.4737 17 7 9.7182 -7.2726 2.7410 18 14 11.1928 -7.6624 0.4282 19 1 11.0946 -7.1292 -0.9543 20 1 12.5084 -7.2930 1.0094 21 1 11.0626 -9.1414 0.3983 22 6 2.0760 -0.7891 1.2086 23 1 -0.3633 0.4873 0.9048 24 1 -0.3634 0.5398 -0.8745 25 1 -0.3633 -1.0273 -0.0302 26 1 2.1868 -0.1574 -2.0903 27 1 1.4464 -1.6574 -1.4372 28 1 4.1932 -0.4491 -0.7978 29 1 3.7979 -2.1440 -1.2130 30 1 5.2619 -2.8862 0.0111 31 1 6.2886 -3.3757 2.5962 32 1 5.2272 -4.7324 2.1482 33 1 6.5419 -5.0751 0.0736 34 1 7.6031 -3.7184 0.5221 35 1 8.2572 -4.9137 2.5934 36 1 7.1963 -6.2708 2.1455 37 1 10.3498 -7.8958 3.1329 38 1 1.3130 -1.4732 1.5800 39 1 2.3742 -0.0990 1.9979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595487206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:41 Heat of formation + Delta-G solvation = -15.117887 kcal Electronic energy + Delta-G solvation = -19301.901386 eV Core-core repulsion = 16244.146375 eV Total energy + Delta-G solvation = -3057.755011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.64562 -38.70659 -36.29631 -35.36738 -33.64265 -33.05702 -31.06594 -30.18538 -27.50591 -26.14029 -23.91864 -22.92709 -22.64556 -20.63038 -19.81373 -18.38908 -17.45564 -16.35872 -16.10667 -15.78026 -15.02986 -14.75523 -14.54947 -14.43607 -14.04432 -13.97368 -13.58594 -13.28600 -13.18959 -12.82221 -12.65770 -12.35955 -12.29677 -11.80168 -11.76321 -11.69152 -11.59645 -11.30470 -10.92436 -10.72855 -10.57075 -10.15239 -9.86986 -9.45695 -9.11491 -9.03057 -8.55673 -8.37710 -6.02080 -4.05146 2.26813 2.35128 2.52990 3.23531 3.29717 3.36180 3.37299 3.40627 3.82574 3.96100 4.13188 4.24975 4.44376 4.70226 4.76306 5.03994 5.11092 5.16569 5.27434 5.33844 5.35687 5.43847 5.49158 5.55761 5.66755 5.80559 5.97510 6.17645 6.50451 6.61445 6.79805 7.00043 7.02775 7.13566 7.63942 7.76464 7.96903 8.01438 8.37718 8.67219 9.01824 9.59129 11.09261 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.042194 B = 0.002917 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.449799 B = 9596.357391 C = 9847.990050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 C 0.217 3.783 4 N -0.423 5.423 5 C -0.115 4.115 6 C 0.094 3.906 7 N -0.642 5.642 8 C 0.720 3.280 9 O -0.586 6.586 10 N -0.738 5.738 11 C 0.134 3.866 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.142 3.858 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.394 0.606 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.089 0.911 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.514 12.790 -9.562 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.015 3.985 3 C -0.101 4.101 4 N -0.097 5.097 5 C -0.154 4.154 6 C -0.030 4.030 7 N -0.383 5.383 8 C 0.422 3.578 9 O -0.464 6.464 10 N -0.392 5.392 11 C 0.011 3.989 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.017 3.983 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.227 0.773 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.937 14.094 -8.468 25.079 hybrid contribution 0.883 -0.705 -0.966 1.486 sum -18.054 13.389 -9.434 24.376 Atomic orbital electron populations 1.21800 0.89591 1.04234 1.03646 1.19249 0.97235 0.83655 0.98320 1.28695 0.93516 0.94281 0.93650 1.81263 1.08411 1.12226 1.07806 1.23006 0.96211 1.00230 0.95945 1.22343 0.97419 1.01355 0.81870 1.47521 1.32045 1.47995 1.10720 1.15460 0.79744 0.78393 0.84177 1.90938 1.72552 1.68190 1.14723 1.45406 1.30641 1.48594 1.14575 1.21548 0.91975 0.91459 0.93900 1.21890 0.95388 0.99553 0.98974 1.19034 0.93909 0.93546 0.94913 1.21238 1.12292 1.25779 0.96684 0.92605 1.25031 0.97891 0.96590 0.94975 1.69971 1.37085 1.34377 1.11824 0.86532 0.82014 0.78913 0.80503 1.19766 1.21010 1.21001 1.21745 0.88158 0.94211 0.94180 0.91073 0.91004 0.89778 0.88864 0.87991 0.91395 0.89744 0.77263 0.91885 0.91790 0.92742 0.92789 0.96227 0.96201 0.92969 0.89248 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.42 8.44 37.16 0.31 -0.10 16 2 C 0.02 0.11 0.86 -155.30 -0.13 -0.02 16 3 C 0.22 1.89 13.65 -20.76 -0.28 1.60 16 4 N -0.42 -4.97 18.54 42.15 0.78 -4.19 16 5 C -0.11 -0.49 6.03 -24.43 -0.15 -0.64 16 6 C 0.09 0.66 6.37 -2.53 -0.02 0.64 16 7 N -0.64 -6.89 3.33 -176.24 -0.59 -7.47 16 8 C 0.72 10.97 8.49 -86.91 -0.74 10.23 16 9 O -0.59 -11.42 16.67 5.29 0.09 -11.33 16 10 N -0.74 -10.68 5.52 -65.23 -0.36 -11.04 16 11 C 0.13 2.37 5.67 -4.05 -0.02 2.34 16 12 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 C 0.14 1.21 6.02 -3.06 -0.02 1.19 16 23 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.08 0.16 8.13 -51.93 -0.42 -0.26 16 26 H 0.09 0.29 8.03 -51.93 -0.42 -0.12 16 27 H 0.10 0.28 8.04 -51.93 -0.42 -0.14 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.50 7.29 -51.93 -0.38 0.12 16 30 H 0.39 4.58 6.95 -40.82 -0.28 4.30 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 0.69 7.82 -51.93 -0.41 0.28 16 39 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -35.08 331.96 -7.17 -42.26 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.08 Total: -3.53 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.74 Total: -0.04 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.57 Total: -48.72 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.08 -7.17 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595487206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.139 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds