Wall clock time and date at job start Mon Mar 30 2020 04:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.47202 * 110.63846 * 2 1 4 4 N 2.60803 * 110.63863 * 0.02562 * 2 1 3 5 5 C 1.55153 * 110.72623 * 123.14265 * 2 1 3 6 6 C 1.54907 * 101.58591 * 154.04199 * 5 2 1 7 7 N 1.47421 * 104.83130 * 322.99658 * 6 5 2 8 8 C 1.34778 * 125.64814 * 204.09169 * 7 6 5 9 9 O 1.21581 * 120.00499 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99586 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99652 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46881 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.47020 * 108.70608 * 24.35181 * 7 6 5 23 23 H 1.09004 * 109.47521 * 296.85346 * 1 2 3 24 24 H 1.09005 * 109.47783 * 56.86132 * 1 2 3 25 25 H 1.09008 * 109.47143 * 176.85508 * 1 2 3 26 26 H 1.09006 * 111.00012 * 35.96890 * 5 2 1 27 27 H 1.08996 * 111.03927 * 272.13926 * 5 2 1 28 28 H 1.08997 * 110.36872 * 204.15003 * 6 5 2 29 29 H 1.09007 * 110.45564 * 81.87742 * 6 5 2 30 30 H 0.96993 * 119.99868 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.46922 * 60.00542 * 11 10 8 32 32 H 1.08994 * 109.47094 * 300.00180 * 11 10 8 33 33 H 1.09004 * 109.46806 * 60.00265 * 12 11 10 34 34 H 1.09000 * 109.47828 * 300.00569 * 12 11 10 35 35 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 36 36 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.88572 * 118.13581 * 22 7 6 39 39 H 1.09002 * 109.88540 * 239.29501 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0488 1.3776 0.0000 4 7 2.4492 2.4407 0.0011 5 6 2.0790 -0.7934 1.2150 6 6 3.4653 -1.2446 0.6912 7 7 3.2495 -1.5468 -0.7355 8 6 4.0005 -2.3783 -1.4846 9 8 3.7291 -2.5528 -2.6568 10 7 5.0524 -3.0164 -0.9342 11 6 5.8691 -3.9197 -1.7486 12 6 6.9894 -4.5087 -0.8892 13 6 7.8427 -5.4516 -1.7399 14 6 8.9459 -6.0322 -0.8931 15 1 9.0298 -5.7567 0.1478 16 6 9.8445 -6.9202 -1.4457 17 7 9.7421 -7.2560 -2.7131 18 14 11.2072 -7.6458 -0.3943 19 1 10.6109 -8.3976 0.7391 20 1 12.0325 -8.5647 -1.2187 21 1 12.0620 -6.5517 0.1326 22 6 2.0831 -0.7862 -1.2074 23 1 -0.3634 0.4642 0.9169 24 1 -0.3635 0.5618 -0.8605 25 1 -0.3634 -1.0262 -0.0564 26 1 1.4470 -1.6530 1.4382 27 1 2.1820 -0.1496 2.0885 28 1 3.7994 -2.1363 1.2216 29 1 4.1944 -0.4421 0.8029 30 1 5.2686 -2.8774 0.0011 31 1 6.3032 -3.3659 -2.5811 32 1 5.2447 -4.7255 -2.1345 33 1 6.5556 -5.0624 -0.0565 34 1 7.6137 -3.7027 -0.5036 35 1 8.2765 -4.8975 -2.5723 36 1 7.2188 -6.2577 -2.1257 37 1 10.3745 -7.8805 -3.1020 38 1 2.3847 -0.0959 -1.9952 39 1 1.3216 -1.4700 -1.5825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595487207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:43 Heat of formation + Delta-G solvation = -15.085553 kcal Electronic energy + Delta-G solvation = -19302.794718 eV Core-core repulsion = 16245.041109 eV Total energy + Delta-G solvation = -3057.753609 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65423 -38.71407 -36.29421 -35.36692 -33.64411 -33.05701 -31.06538 -30.18260 -27.51114 -26.14343 -23.92189 -22.92407 -22.63982 -20.62899 -19.81370 -18.38958 -17.45955 -16.35451 -16.10575 -15.77872 -15.03250 -14.75396 -14.55040 -14.44376 -14.04457 -13.97166 -13.59537 -13.28316 -13.18382 -12.81773 -12.65047 -12.36856 -12.27929 -11.80915 -11.75639 -11.68996 -11.60234 -11.31242 -10.88627 -10.72159 -10.62300 -10.15200 -9.86164 -9.45009 -9.13918 -9.03072 -8.55685 -8.36864 -6.01662 -4.04852 2.27031 2.35310 2.53001 3.23429 3.31909 3.36159 3.36827 3.38559 3.82561 3.96525 4.13238 4.24746 4.44530 4.70341 4.76132 5.03859 5.11017 5.16803 5.27640 5.34025 5.35513 5.44253 5.49025 5.55637 5.66821 5.80608 5.97452 6.17696 6.50473 6.61500 6.79817 7.00075 7.02818 7.13604 7.63621 7.76670 7.97102 8.01446 8.37887 8.67226 9.01631 9.59202 11.09615 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.042204 B = 0.002917 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.286180 B = 9595.281722 C = 9846.745225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 C 0.217 3.783 4 N -0.423 5.423 5 C -0.115 4.115 6 C 0.094 3.906 7 N -0.642 5.642 8 C 0.720 3.280 9 O -0.586 6.586 10 N -0.738 5.738 11 C 0.134 3.866 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.142 3.858 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.394 0.606 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.072 0.928 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.558 12.740 9.476 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 C -0.102 4.102 4 N -0.097 5.097 5 C -0.154 4.154 6 C -0.030 4.030 7 N -0.383 5.383 8 C 0.422 3.578 9 O -0.464 6.464 10 N -0.392 5.392 11 C 0.011 3.989 12 C -0.158 4.158 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.017 3.983 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.227 0.773 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.977 14.035 8.375 25.045 hybrid contribution 0.875 -0.693 0.996 1.496 sum -18.102 13.342 9.371 24.362 Atomic orbital electron populations 1.21797 0.89563 1.04258 1.03637 1.19213 0.97233 0.83636 0.98317 1.28721 0.93527 0.94298 0.93647 1.81262 1.08418 1.12223 1.07815 1.22952 0.96198 1.00323 0.95969 1.22349 0.97398 1.01336 0.81892 1.47522 1.32051 1.47998 1.10711 1.15460 0.79724 0.78409 0.84181 1.90937 1.72664 1.68100 1.14696 1.45409 1.30475 1.48799 1.14539 1.21549 0.91875 0.91509 0.93944 1.21890 0.95393 0.99576 0.98953 1.19020 0.93834 0.93552 0.94915 1.21168 1.12404 1.25952 0.96644 0.92709 1.25029 0.97869 0.96557 0.94989 1.69957 1.37132 1.34263 1.11909 0.86643 0.81964 0.79029 0.80251 1.20244 1.21270 1.20261 1.21744 0.88183 0.94231 0.94135 0.90932 0.91130 0.89768 0.87987 0.88879 0.89732 0.91392 0.77266 0.91883 0.91787 0.92746 0.92789 0.96241 0.96209 0.92854 0.90933 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.42 8.48 37.15 0.32 -0.10 16 2 C 0.02 0.11 0.86 -155.46 -0.13 -0.02 16 3 C 0.22 1.88 13.62 -20.76 -0.28 1.60 16 4 N -0.42 -4.97 18.54 42.15 0.78 -4.19 16 5 C -0.12 -0.49 6.01 -24.59 -0.15 -0.64 16 6 C 0.09 0.66 6.37 -2.53 -0.02 0.64 16 7 N -0.64 -6.89 3.33 -176.23 -0.59 -7.48 16 8 C 0.72 10.97 8.49 -86.91 -0.74 10.24 16 9 O -0.59 -11.42 16.67 5.29 0.09 -11.33 16 10 N -0.74 -10.69 5.52 -65.23 -0.36 -11.05 16 11 C 0.13 2.37 5.67 -4.04 -0.02 2.35 16 12 C -0.12 -2.32 5.27 -26.74 -0.14 -2.46 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.14 1.21 6.03 -3.06 -0.02 1.19 16 23 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 24 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.08 0.17 8.08 -51.92 -0.42 -0.25 16 26 H 0.10 0.28 8.05 -51.93 -0.42 -0.14 16 27 H 0.09 0.29 8.02 -51.93 -0.42 -0.12 16 28 H 0.08 0.50 7.30 -51.93 -0.38 0.12 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.39 4.58 6.95 -40.82 -0.28 4.30 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 39 H 0.09 0.69 7.78 -51.93 -0.40 0.28 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -35.05 331.86 -7.17 -42.22 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -6.07 Total: -3.45 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.74 Total: -0.05 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.57 Total: -48.76 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.05 -7.17 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595487207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.131 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds