Wall clock time and date at job start Mon Mar 30 2020 04:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.47202 * 110.63846 * 2 1 4 4 N 2.60803 * 110.63863 * 0.02562 * 2 1 3 5 5 C 1.55153 * 110.72623 * 123.14265 * 2 1 3 6 6 C 1.54907 * 101.58591 * 154.04199 * 5 2 1 7 7 N 1.47421 * 104.83130 * 322.99658 * 6 5 2 8 8 C 1.34778 * 125.64814 * 204.09169 * 7 6 5 9 9 O 1.21581 * 120.00499 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99586 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99652 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46881 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.47020 * 108.70608 * 24.35181 * 7 6 5 23 23 H 1.09004 * 109.47521 * 296.85346 * 1 2 3 24 24 H 1.09005 * 109.47783 * 56.86132 * 1 2 3 25 25 H 1.09008 * 109.47143 * 176.85508 * 1 2 3 26 26 H 1.09006 * 111.00012 * 35.96890 * 5 2 1 27 27 H 1.08996 * 111.03927 * 272.13926 * 5 2 1 28 28 H 1.08997 * 110.36872 * 204.15003 * 6 5 2 29 29 H 1.09007 * 110.45564 * 81.87742 * 6 5 2 30 30 H 0.96993 * 119.99868 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.46922 * 60.00542 * 11 10 8 32 32 H 1.08994 * 109.47094 * 300.00180 * 11 10 8 33 33 H 1.09004 * 109.46806 * 60.00265 * 12 11 10 34 34 H 1.09000 * 109.47828 * 300.00569 * 12 11 10 35 35 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 36 36 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.88572 * 118.13581 * 22 7 6 39 39 H 1.09002 * 109.88540 * 239.29501 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0488 1.3776 0.0000 4 7 2.4492 2.4407 0.0011 5 6 2.0790 -0.7934 1.2150 6 6 3.4653 -1.2446 0.6912 7 7 3.2495 -1.5468 -0.7355 8 6 4.0005 -2.3783 -1.4846 9 8 3.7291 -2.5528 -2.6568 10 7 5.0524 -3.0164 -0.9342 11 6 5.8691 -3.9197 -1.7486 12 6 6.9894 -4.5087 -0.8892 13 6 7.8427 -5.4516 -1.7399 14 6 8.9459 -6.0322 -0.8931 15 1 9.0298 -5.7567 0.1478 16 6 9.8445 -6.9202 -1.4457 17 7 9.7421 -7.2560 -2.7131 18 14 11.2072 -7.6458 -0.3943 19 1 10.6109 -8.3976 0.7391 20 1 12.0325 -8.5647 -1.2187 21 1 12.0620 -6.5517 0.1326 22 6 2.0831 -0.7862 -1.2074 23 1 -0.3634 0.4642 0.9169 24 1 -0.3635 0.5618 -0.8605 25 1 -0.3634 -1.0262 -0.0564 26 1 1.4470 -1.6530 1.4382 27 1 2.1820 -0.1496 2.0885 28 1 3.7994 -2.1363 1.2216 29 1 4.1944 -0.4421 0.8029 30 1 5.2686 -2.8774 0.0011 31 1 6.3032 -3.3659 -2.5811 32 1 5.2447 -4.7255 -2.1345 33 1 6.5556 -5.0624 -0.0565 34 1 7.6137 -3.7027 -0.5036 35 1 8.2765 -4.8975 -2.5723 36 1 7.2188 -6.2577 -2.1257 37 1 10.3745 -7.8805 -3.1020 38 1 2.3847 -0.0959 -1.9952 39 1 1.3216 -1.4700 -1.5825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595487207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:42 Heat of formation + Delta-G solvation = -38.908956 kcal Electronic energy + Delta-G solvation = -19303.827778 eV Core-core repulsion = 16245.041109 eV Total energy + Delta-G solvation = -3058.786669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54083 -39.65902 -37.17871 -36.85234 -35.21725 -34.18329 -32.74348 -30.73920 -28.86234 -27.24659 -25.09265 -24.06114 -23.39981 -22.26923 -20.95398 -19.31614 -18.57298 -18.07506 -17.07660 -16.97189 -16.46064 -16.13280 -15.57638 -15.44813 -15.11196 -14.85227 -14.27858 -14.24291 -14.10042 -13.91836 -13.67183 -13.54997 -13.39905 -13.18511 -12.73315 -12.69775 -12.54096 -12.38611 -12.20864 -12.10682 -11.75246 -11.65281 -11.62377 -11.30447 -11.14609 -10.53240 -10.25965 -9.55402 -8.17932 -6.29436 1.42551 1.45886 1.47164 1.53815 1.64978 1.68208 2.08930 2.43152 2.73216 3.00038 3.15850 3.39794 3.46988 3.83032 4.17116 4.24495 4.25483 4.28682 4.57240 4.58501 4.64223 4.72480 4.84416 4.97269 4.97747 4.99715 5.03853 5.12650 5.17709 5.24120 5.37563 5.46733 5.55234 5.72969 5.85895 5.97076 6.23994 6.46475 6.87434 6.94102 7.40057 7.51472 8.94077 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.042204 B = 0.002917 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.286180 B = 9595.281722 C = 9846.745225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.031 3.969 3 C 0.240 3.760 4 N -0.481 5.481 5 C -0.103 4.103 6 C 0.082 3.918 7 N -0.638 5.638 8 C 0.715 3.285 9 O -0.637 6.637 10 N -0.728 5.728 11 C 0.149 3.851 12 C -0.100 4.100 13 C 0.024 3.976 14 C -0.541 4.541 15 H 0.067 0.933 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.264 1.264 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.134 3.866 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.410 0.590 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.065 0.935 35 H -0.010 1.010 36 H -0.006 1.006 37 H 0.263 0.737 38 H 0.051 0.949 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.551 12.740 12.538 27.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.027 3.973 3 C -0.078 4.078 4 N -0.156 5.156 5 C -0.141 4.141 6 C -0.040 4.040 7 N -0.376 5.376 8 C 0.417 3.583 9 O -0.518 6.518 10 N -0.383 5.383 11 C 0.025 3.975 12 C -0.138 4.138 13 C -0.014 4.014 14 C -0.579 4.579 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.188 1.188 20 H -0.213 1.213 21 H -0.191 1.191 22 C 0.010 3.990 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.122 0.878 26 H 0.147 0.853 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.247 0.753 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.009 0.991 36 H 0.012 0.988 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.998 14.080 11.513 27.032 hybrid contribution 1.141 -0.662 0.010 1.319 sum -18.857 13.418 11.523 25.854 Atomic orbital electron populations 1.21866 0.86980 1.05711 1.04408 1.19371 0.98838 0.81404 0.97687 1.29313 0.91984 0.94564 0.91896 1.81285 1.10390 1.14204 1.09726 1.23042 0.94411 1.01201 0.95467 1.22688 0.99459 1.02154 0.79705 1.47525 1.31545 1.46410 1.12125 1.15608 0.79966 0.78890 0.83850 1.90900 1.73959 1.69892 1.17086 1.45042 1.30074 1.48246 1.14977 1.21100 0.91516 0.91408 0.93499 1.21582 0.95088 0.98769 0.98315 1.18934 0.93985 0.93658 0.94807 1.21664 1.12907 1.25913 0.97453 0.91441 1.26029 1.00732 0.97114 0.96254 1.70111 1.38383 1.35136 1.13966 0.85472 0.78548 0.78335 0.78508 1.18849 1.21262 1.19129 1.21934 0.87755 0.94188 0.95113 0.89337 0.91415 0.87846 0.85293 0.86903 0.88004 0.91775 0.75309 0.93806 0.93081 0.91034 0.91610 0.99128 0.98769 0.92826 0.93049 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.37 8.48 71.98 0.61 0.24 16 2 C 0.03 0.27 0.86 -52.80 -0.05 0.23 16 3 C 0.24 3.86 13.62 89.44 1.22 5.08 16 4 N -0.48 -11.15 18.54 20.01 0.37 -10.78 16 5 C -0.10 -0.47 6.01 31.98 0.19 -0.27 16 6 C 0.08 0.92 6.37 86.86 0.55 1.47 16 7 N -0.64 -12.78 3.33 -829.74 -2.76 -15.54 16 8 C 0.72 21.54 8.49 179.05 1.52 23.06 16 9 O -0.64 -25.40 16.67 -3.97 -0.07 -25.47 16 10 N -0.73 -20.43 5.52 -478.54 -2.64 -23.07 16 11 C 0.15 5.33 5.67 86.38 0.49 5.82 16 12 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 13 C 0.02 1.24 4.97 29.85 0.15 1.39 16 14 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 15 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 16 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 17 N -0.94 -57.21 13.29 21.45 0.28 -56.93 16 18 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 C 0.13 2.12 6.03 86.73 0.52 2.64 16 23 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 24 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 25 H 0.10 -0.03 8.08 -2.38 -0.02 -0.05 16 26 H 0.13 0.02 8.05 -2.38 -0.02 0.00 16 27 H 0.11 0.19 8.02 -2.39 -0.02 0.17 16 28 H 0.10 0.83 7.30 -2.39 -0.02 0.81 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.41 8.66 6.95 -92.71 -0.64 8.02 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 36 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 38 H 0.05 1.04 7.82 -2.39 -0.02 1.02 16 39 H 0.10 1.40 7.78 -2.39 -0.02 1.38 16 Total: -1.00 -79.04 331.86 3.68 -75.36 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 0.40 Total: 4.38 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.07 Total: 6.47 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -4.74 Total: -106.32 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.07 Total: -25.47 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -79.04 3.68 -75.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595487207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.448 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds