Wall clock time and date at job start Mon Mar 30 2020 04:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39879 * 125.89924 * 2 1 4 4 C 1.35315 * 107.91907 * 179.97438 * 3 2 1 5 5 N 1.34945 * 107.74586 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.03593 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47542 * 205.00169 * 6 5 4 8 8 C 1.53000 * 109.47215 * 325.00537 * 6 5 4 9 9 C 1.53003 * 109.47070 * 84.99994 * 6 5 4 10 10 C 1.50700 * 109.47002 * 174.99892 * 9 6 5 11 11 O 1.21281 * 120.00103 * 0.02562 * 10 9 6 12 12 N 1.34780 * 120.00091 * 179.97438 * 10 9 6 13 13 C 1.46491 * 120.00170 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47166 * 35.00620 * 13 12 10 15 15 C 1.53000 * 109.47268 * 275.00492 * 13 12 10 16 16 C 1.50702 * 109.46957 * 155.00354 * 13 12 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 N 1.30844 * 125.89940 * 180.30073 * 2 1 3 25 25 H 1.08994 * 109.46853 * 90.00305 * 1 2 3 26 26 H 1.08998 * 109.46921 * 210.00055 * 1 2 3 27 27 H 1.08998 * 109.46807 * 330.00358 * 1 2 3 28 28 H 1.07997 * 126.03624 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.12231 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.46650 * 299.99989 * 8 6 5 31 31 H 1.08997 * 109.47166 * 59.99402 * 8 6 5 32 32 H 1.08994 * 109.47482 * 180.02562 * 8 6 5 33 33 H 1.09001 * 109.46724 * 55.00432 * 9 6 5 34 34 H 1.08999 * 109.47339 * 295.00514 * 9 6 5 35 35 H 0.97002 * 119.99721 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.47084 * 299.99595 * 15 13 12 37 37 H 1.08994 * 109.47175 * 60.00166 * 15 13 12 38 38 H 1.09001 * 109.47192 * 180.02562 * 15 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6143 0.7154 0.0006 5 7 3.6088 -0.6341 0.0015 6 6 4.7899 -1.5007 0.0018 7 1 4.5319 -2.4669 -0.4318 8 6 5.9000 -0.8503 -0.8261 9 6 5.2758 -1.7001 1.4389 10 6 6.4138 -2.6880 1.4519 11 8 6.7987 -3.1834 0.4139 12 7 7.0046 -3.0202 2.6169 13 6 8.1111 -3.9800 2.6295 14 1 8.7108 -3.8550 1.7278 15 6 7.5514 -5.4031 2.6765 16 6 8.9719 -3.7384 3.8427 17 1 8.7196 -2.9490 4.5353 18 6 10.0780 -4.5291 4.0718 19 7 10.3850 -5.4905 3.2285 20 14 11.1405 -4.2345 5.5796 21 1 10.6315 -5.0507 6.7110 22 1 12.5424 -4.6226 5.2808 23 1 11.0924 -2.7962 5.9459 24 7 2.2743 -1.0599 -0.0056 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9923 2.1598 -0.0004 29 1 4.4891 1.3486 0.0011 30 1 5.5539 -0.7082 -1.8499 31 1 6.1581 0.1158 -0.3925 32 1 6.7786 -1.4953 -0.8263 33 1 4.4572 -2.0809 2.0496 34 1 5.6174 -0.7470 1.8425 35 1 6.6970 -2.6236 3.4470 36 1 6.9518 -5.5281 3.5782 37 1 6.9289 -5.5779 1.7991 38 1 8.3748 -6.1173 2.6863 39 1 11.1634 -6.0465 3.3895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:40 Heat of formation + Delta-G solvation = 25.260635 kcal Electronic energy + Delta-G solvation = -19755.942139 eV Core-core repulsion = 16699.938072 eV Total energy + Delta-G solvation = -3056.004067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27529 -39.17867 -35.74474 -34.64938 -32.47062 -31.72853 -29.98307 -29.49329 -27.54102 -27.21737 -25.29305 -23.08046 -21.26669 -20.14010 -19.74828 -19.43196 -17.49546 -16.77418 -15.55306 -15.48317 -15.20295 -14.95573 -14.33475 -14.17567 -13.62808 -13.51557 -13.38605 -12.90644 -12.73900 -12.55212 -12.43177 -12.14394 -11.91030 -11.61578 -11.37953 -11.13591 -11.11336 -10.95103 -10.76924 -10.56593 -10.35515 -10.27788 -9.28510 -9.12008 -9.08951 -8.60952 -8.54824 -7.99197 -6.16865 -4.26515 1.89855 2.44380 2.75974 3.21082 3.24997 3.28456 3.30357 4.04478 4.34120 4.46163 4.71885 4.76222 4.87155 5.13806 5.15710 5.16051 5.47238 5.47827 5.48840 5.52866 5.61737 5.72756 5.75895 5.84006 5.95256 6.09057 6.27136 6.67437 6.77743 6.92106 7.05985 7.10004 7.38432 7.49151 7.63924 7.76765 7.85687 8.10141 8.57334 8.71351 9.01813 9.41067 10.89020 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039061 B = 0.003473 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.655208 B = 8059.661748 C = 8130.908709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.062 3.938 3 C -0.279 4.279 4 C 0.059 3.941 5 N -0.361 5.361 6 C 0.176 3.824 7 H 0.111 0.889 8 C -0.166 4.166 9 C -0.155 4.155 10 C 0.508 3.492 11 O -0.553 6.553 12 N -0.705 5.705 13 C 0.264 3.736 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.274 1.274 24 N -0.296 5.296 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.171 0.829 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.390 0.610 36 H 0.026 0.974 37 H 0.015 0.985 38 H 0.091 0.909 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.829 12.243 -4.359 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.309 4.309 4 C -0.088 4.088 5 N -0.143 5.143 6 C 0.075 3.925 7 H 0.129 0.871 8 C -0.224 4.224 9 C -0.196 4.196 10 C 0.292 3.708 11 O -0.433 6.433 12 N -0.352 5.352 13 C 0.163 3.837 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.574 4.574 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 N -0.119 5.119 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.188 0.812 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.222 0.778 36 H 0.045 0.955 37 H 0.034 0.966 38 H 0.109 0.891 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.206 10.348 -5.124 17.542 hybrid contribution 0.510 1.256 1.356 1.918 sum -12.696 11.604 -3.767 17.608 Atomic orbital electron populations 1.20133 0.86986 1.03057 1.02684 1.22349 0.96860 0.90961 1.00238 1.21336 0.91682 0.99575 1.18294 1.22500 0.99500 0.85523 1.01287 1.48973 1.05125 1.04598 1.55607 1.20993 0.81269 0.94489 0.95765 0.87135 1.22324 0.99319 1.01657 0.99145 1.22094 0.99015 1.00992 0.97540 1.20038 0.83399 0.82535 0.84842 1.90638 1.65187 1.55537 1.31987 1.46538 1.35995 1.45151 1.07565 1.18768 0.82484 0.84134 0.98339 0.93243 1.22087 1.00676 1.00970 0.96926 1.21218 1.10404 1.17293 1.08501 0.92078 1.24893 0.97250 0.94744 0.96814 1.69901 1.26973 1.19264 1.35886 0.86438 0.79551 0.78555 0.82502 1.20520 1.21027 1.19846 1.77339 0.86714 1.22945 1.24869 0.90815 0.91084 0.90665 0.83882 0.81207 0.92005 0.92303 0.87421 0.88689 0.88877 0.77816 0.95483 0.96596 0.89068 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.45 36.01 0.38 -0.22 16 2 C 0.06 0.77 7.22 -82.40 -0.59 0.17 16 3 C -0.28 -3.10 10.74 -40.01 -0.43 -3.53 16 4 C 0.06 0.67 10.59 -17.22 -0.18 0.48 16 5 N -0.36 -4.93 3.53 -54.86 -0.19 -5.12 16 6 C 0.18 2.45 3.05 -67.93 -0.21 2.25 16 7 H 0.11 1.74 7.95 -51.93 -0.41 1.32 16 8 C -0.17 -2.10 8.57 37.16 0.32 -1.78 16 9 C -0.16 -2.18 5.50 -27.88 -0.15 -2.33 16 10 C 0.51 9.47 7.51 -10.98 -0.08 9.38 16 11 O -0.55 -12.10 13.63 5.56 0.08 -12.03 16 12 N -0.71 -14.16 5.07 -54.93 -0.28 -14.44 16 13 C 0.26 6.58 2.56 -69.09 -0.18 6.40 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 15 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 16 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -24.61 11.31 55.43 0.63 -23.98 16 20 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 N -0.30 -4.44 12.58 33.67 0.42 -4.01 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.17 1.43 7.26 -52.49 -0.38 1.05 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.62 7.16 -51.93 -0.37 0.25 16 32 H 0.11 1.63 5.95 -51.93 -0.31 1.32 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.39 6.80 8.54 -40.82 -0.35 6.45 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -30.91 326.18 -6.51 -37.42 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.88 Total: 6.97 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.18 Total: -5.10 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.58 Total: -47.56 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.91 -6.51 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.681 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds