Wall clock time and date at job start Mon Mar 30 2020 04:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39879 * 125.89924 * 2 1 4 4 C 1.35315 * 107.91907 * 179.97438 * 3 2 1 5 5 N 1.34945 * 107.74586 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.03593 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47542 * 205.00169 * 6 5 4 8 8 C 1.53000 * 109.47215 * 325.00537 * 6 5 4 9 9 C 1.53003 * 109.47070 * 84.99994 * 6 5 4 10 10 C 1.50700 * 109.47002 * 174.99892 * 9 6 5 11 11 O 1.21281 * 120.00103 * 0.02562 * 10 9 6 12 12 N 1.34780 * 120.00091 * 179.97438 * 10 9 6 13 13 C 1.46491 * 120.00170 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47166 * 35.00620 * 13 12 10 15 15 C 1.53000 * 109.47268 * 275.00492 * 13 12 10 16 16 C 1.50702 * 109.46957 * 155.00354 * 13 12 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 N 1.30844 * 125.89940 * 180.30073 * 2 1 3 25 25 H 1.08994 * 109.46853 * 90.00305 * 1 2 3 26 26 H 1.08998 * 109.46921 * 210.00055 * 1 2 3 27 27 H 1.08998 * 109.46807 * 330.00358 * 1 2 3 28 28 H 1.07997 * 126.03624 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.12231 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.46650 * 299.99989 * 8 6 5 31 31 H 1.08997 * 109.47166 * 59.99402 * 8 6 5 32 32 H 1.08994 * 109.47482 * 180.02562 * 8 6 5 33 33 H 1.09001 * 109.46724 * 55.00432 * 9 6 5 34 34 H 1.08999 * 109.47339 * 295.00514 * 9 6 5 35 35 H 0.97002 * 119.99721 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.47084 * 299.99595 * 15 13 12 37 37 H 1.08994 * 109.47175 * 60.00166 * 15 13 12 38 38 H 1.09001 * 109.47192 * 180.02562 * 15 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6143 0.7154 0.0006 5 7 3.6088 -0.6341 0.0015 6 6 4.7899 -1.5007 0.0018 7 1 4.5319 -2.4669 -0.4318 8 6 5.9000 -0.8503 -0.8261 9 6 5.2758 -1.7001 1.4389 10 6 6.4138 -2.6880 1.4519 11 8 6.7987 -3.1834 0.4139 12 7 7.0046 -3.0202 2.6169 13 6 8.1111 -3.9800 2.6295 14 1 8.7108 -3.8550 1.7278 15 6 7.5514 -5.4031 2.6765 16 6 8.9719 -3.7384 3.8427 17 1 8.7196 -2.9490 4.5353 18 6 10.0780 -4.5291 4.0718 19 7 10.3850 -5.4905 3.2285 20 14 11.1405 -4.2345 5.5796 21 1 10.6315 -5.0507 6.7110 22 1 12.5424 -4.6226 5.2808 23 1 11.0924 -2.7962 5.9459 24 7 2.2743 -1.0599 -0.0056 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9923 2.1598 -0.0004 29 1 4.4891 1.3486 0.0011 30 1 5.5539 -0.7082 -1.8499 31 1 6.1581 0.1158 -0.3925 32 1 6.7786 -1.4953 -0.8263 33 1 4.4572 -2.0809 2.0496 34 1 5.6174 -0.7470 1.8425 35 1 6.6970 -2.6236 3.4470 36 1 6.9518 -5.5281 3.5782 37 1 6.9289 -5.5779 1.7991 38 1 8.3748 -6.1173 2.6863 39 1 11.1634 -6.0465 3.3895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:39 Heat of formation + Delta-G solvation = 5.082167 kcal Electronic energy + Delta-G solvation = -19756.817143 eV Core-core repulsion = 16699.938072 eV Total energy + Delta-G solvation = -3056.879071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20693 -40.71683 -37.16543 -36.19207 -34.35396 -32.67955 -31.20254 -30.86997 -28.80698 -28.15862 -27.34384 -24.22822 -22.87342 -21.36044 -20.94193 -20.64343 -18.98761 -18.18015 -17.21973 -16.96896 -16.61871 -16.26621 -15.72958 -15.21425 -14.84475 -14.78537 -14.45508 -14.28538 -14.06400 -13.72999 -13.60829 -13.36528 -13.10678 -12.95219 -12.87081 -12.75054 -12.67817 -12.39468 -12.28066 -12.17139 -12.13216 -11.47194 -11.11379 -10.78023 -10.59679 -10.18095 -9.76752 -9.46141 -8.18802 -6.36304 0.99313 1.43754 1.44917 1.46432 1.55878 1.74654 1.91848 2.35720 2.66274 3.11852 3.44489 3.62968 3.91322 3.96841 4.00223 4.18900 4.35606 4.47731 4.56609 4.72174 4.77678 4.81357 4.84116 4.86764 4.90590 4.99861 5.08212 5.09012 5.21919 5.29967 5.42285 5.59906 5.67071 5.83887 5.87909 6.08550 6.16977 6.71549 6.86010 6.91190 7.30802 7.50738 8.87387 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039061 B = 0.003473 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.655208 B = 8059.661748 C = 8130.908709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.055 3.945 3 C -0.283 4.283 4 C 0.057 3.943 5 N -0.373 5.373 6 C 0.182 3.818 7 H 0.082 0.918 8 C -0.158 4.158 9 C -0.136 4.136 10 C 0.507 3.493 11 O -0.588 6.588 12 N -0.704 5.704 13 C 0.271 3.729 14 H 0.004 0.996 15 C -0.136 4.136 16 C -0.548 4.548 17 H 0.074 0.926 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.972 3.028 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.263 1.263 24 N -0.346 5.346 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.171 0.829 29 H 0.202 0.798 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.405 0.595 36 H 0.037 0.963 37 H 0.012 0.988 38 H 0.067 0.933 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 14.861 -3.088 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C -0.312 4.312 4 C -0.088 4.088 5 N -0.155 5.155 6 C 0.080 3.920 7 H 0.100 0.900 8 C -0.216 4.216 9 C -0.177 4.177 10 C 0.293 3.707 11 O -0.470 6.470 12 N -0.353 5.353 13 C 0.168 3.832 14 H 0.022 0.978 15 C -0.195 4.195 16 C -0.586 4.586 17 H 0.092 0.908 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.797 3.203 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.187 1.187 24 N -0.170 5.170 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.189 0.811 29 H 0.218 0.782 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.240 0.760 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.217 13.000 -3.841 19.643 hybrid contribution 0.736 0.474 0.882 1.243 sum -13.481 13.474 -2.960 19.288 Atomic orbital electron populations 1.20272 0.84808 1.04028 1.03676 1.23030 0.98417 0.90939 0.98686 1.21741 0.91387 1.00517 1.17541 1.23105 1.00951 0.84705 1.00062 1.48855 1.04487 1.05313 1.56860 1.20758 0.81999 0.93834 0.95452 0.90002 1.22210 0.97599 1.02116 0.99698 1.21957 0.96889 1.00649 0.98192 1.20777 0.83762 0.82529 0.83620 1.90634 1.66350 1.56832 1.33223 1.46283 1.35220 1.44784 1.08992 1.18339 0.83507 0.85212 0.96145 0.97831 1.21923 0.99733 1.00593 0.97220 1.21560 1.10703 1.17537 1.08792 0.90817 1.25800 0.98634 0.94430 0.99721 1.70051 1.27514 1.20229 1.37779 0.85344 0.77332 0.78921 0.78738 1.19832 1.21241 1.18674 1.77310 0.87613 1.24799 1.27232 0.89724 0.91521 0.88278 0.81150 0.78162 0.91370 0.89587 0.90294 0.87972 0.85857 0.76004 0.94348 0.96900 0.91443 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.45 71.24 0.74 -0.30 16 2 C 0.06 1.27 7.22 43.10 0.31 1.58 16 3 C -0.28 -5.42 10.74 21.99 0.24 -5.18 16 4 C 0.06 1.13 10.59 83.54 0.88 2.02 16 5 N -0.37 -9.63 3.53 -327.49 -1.15 -10.78 16 6 C 0.18 4.95 3.05 44.99 0.14 5.09 16 7 H 0.08 2.68 7.95 -2.39 -0.02 2.66 16 8 C -0.16 -3.84 8.57 71.98 0.62 -3.22 16 9 C -0.14 -3.62 5.50 29.85 0.16 -3.46 16 10 C 0.51 18.91 7.51 87.66 0.66 19.57 16 11 O -0.59 -26.63 13.63 -3.03 -0.04 -26.67 16 12 N -0.70 -28.10 5.07 -446.10 -2.26 -30.37 16 13 C 0.27 13.79 2.56 44.25 0.11 13.91 16 14 H 0.00 0.23 7.58 -2.38 -0.02 0.21 16 15 C -0.14 -6.88 9.26 71.98 0.67 -6.21 16 16 C -0.55 -28.49 8.73 25.60 0.22 -28.27 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.01 0.76 5.30 84.66 0.45 1.20 16 19 N -0.92 -52.18 11.31 21.45 0.24 -51.93 16 20 Si 0.97 41.42 29.54 68.60 2.03 43.44 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 N -0.35 -10.12 12.58 -47.37 -0.60 -10.72 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.20 2.51 7.26 -2.91 -0.02 2.48 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.58 7.16 -2.39 -0.02 1.56 16 32 H 0.08 2.43 5.95 -2.39 -0.01 2.42 16 33 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.41 13.57 8.54 -92.71 -0.79 12.78 16 36 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 3.74 6.06 -2.39 -0.01 3.73 16 39 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -68.78 326.18 3.67 -65.10 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.25 Total: 25.21 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.21 Total: -3.28 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -3.77 Total: -103.80 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.04 Total: -26.67 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -68.78 3.67 -65.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.184 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds