Wall clock time and date at job start Mon Mar 30 2020 04:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39866 * 125.89771 * 2 1 4 4 C 1.35317 * 107.91681 * 179.71780 * 3 2 1 5 5 N 1.34946 * 107.74617 * 0.42077 * 4 3 2 6 6 C 1.46504 * 126.03810 * 179.83817 * 5 4 3 7 7 H 1.09004 * 109.46969 * 154.72052 * 6 5 4 8 8 C 1.53002 * 109.46964 * 34.71959 * 6 5 4 9 9 C 1.52997 * 109.47216 * 274.72215 * 6 5 4 10 10 C 1.50705 * 109.47273 * 185.00141 * 9 6 5 11 11 O 1.21278 * 119.99744 * 359.97438 * 10 9 6 12 12 N 1.34768 * 120.00177 * 179.97438 * 10 9 6 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46845 * 35.00845 * 13 12 10 15 15 C 1.52997 * 109.47473 * 275.00296 * 13 12 10 16 16 C 1.50706 * 109.47187 * 154.99900 * 13 12 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 12 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.46754 * 90.00468 * 20 18 16 22 22 H 1.48498 * 109.47278 * 210.00299 * 20 18 16 23 23 H 1.48498 * 109.47109 * 330.00728 * 20 18 16 24 24 N 1.30830 * 125.89480 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47155 * 270.00409 * 1 2 3 26 26 H 1.08998 * 109.46824 * 30.00088 * 1 2 3 27 27 H 1.08998 * 109.47538 * 149.99569 * 1 2 3 28 28 H 1.07998 * 126.04048 * 359.97438 * 3 2 1 29 29 H 1.08004 * 126.12943 * 180.26941 * 4 3 2 30 30 H 1.08997 * 109.46930 * 59.99654 * 8 6 5 31 31 H 1.09001 * 109.46725 * 179.97438 * 8 6 5 32 32 H 1.09003 * 109.46963 * 300.00226 * 8 6 5 33 33 H 1.08996 * 109.47573 * 64.99757 * 9 6 5 34 34 H 1.09000 * 109.46857 * 304.99332 * 9 6 5 35 35 H 0.97001 * 120.00396 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 15 13 12 37 37 H 1.09001 * 109.46832 * 299.99948 * 15 13 12 38 38 H 1.09004 * 109.47261 * 179.97438 * 15 13 12 39 39 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0063 5 7 3.6087 -0.6341 0.0008 6 6 4.7899 -1.5009 0.0013 7 1 4.5315 -2.4668 0.4353 8 6 5.8996 -0.8500 0.8294 9 6 5.2762 -1.7010 -1.4355 10 6 6.4142 -2.6889 -1.4476 11 8 6.7987 -3.1838 -0.4093 12 7 7.0047 -3.0224 -2.6123 13 6 8.1113 -3.9824 -2.6240 14 1 7.9428 -4.7403 -1.8590 15 6 9.4241 -3.2509 -2.3370 16 6 8.1893 -4.6426 -3.9765 17 1 7.4853 -4.3736 -4.7500 18 6 9.1601 -5.5891 -4.2266 19 7 10.0177 -5.9162 -3.2848 20 14 9.2573 -6.4069 -5.9033 21 1 10.1510 -5.6170 -6.7881 22 1 9.7985 -7.7815 -5.7530 23 1 7.8998 -6.4720 -6.5017 24 7 2.2741 -1.0599 0.0005 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.9923 2.1598 -0.0004 29 1 4.4892 1.3484 0.0121 30 1 5.5531 -0.7074 1.8529 31 1 6.7783 -1.4952 0.8301 32 1 6.1579 0.1159 0.3953 33 1 5.6180 -0.7481 -1.8395 34 1 4.4578 -2.0821 -2.0463 35 1 6.6970 -2.6269 -3.4428 36 1 9.3676 -2.7734 -1.3587 37 1 9.5924 -2.4930 -3.1021 38 1 10.2474 -3.9653 -2.3453 39 1 10.7005 -6.5824 -3.4606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:42 Heat of formation + Delta-G solvation = 25.338719 kcal Electronic energy + Delta-G solvation = -19760.635807 eV Core-core repulsion = 16704.635126 eV Total energy + Delta-G solvation = -3056.000681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27630 -39.18052 -35.74549 -34.65035 -32.46845 -31.72708 -29.98304 -29.50560 -27.54229 -27.21268 -25.29894 -23.09141 -21.26356 -20.13258 -19.73943 -19.44425 -17.49965 -16.77286 -15.63851 -15.49115 -15.05667 -14.98884 -14.26549 -14.18317 -13.77926 -13.52855 -13.35823 -12.84912 -12.76678 -12.48466 -12.41973 -12.13923 -12.02663 -11.59001 -11.36306 -11.16501 -11.10641 -10.95786 -10.74554 -10.55858 -10.37406 -10.27772 -9.28374 -9.12472 -9.08562 -8.60192 -8.55170 -7.99531 -6.16537 -4.26103 1.89923 2.44423 2.76123 3.21567 3.25001 3.29074 3.31429 4.04667 4.34656 4.45997 4.71587 4.76006 4.86993 5.13584 5.15368 5.16790 5.46463 5.48097 5.48934 5.52204 5.61883 5.72707 5.76056 5.83850 5.94909 6.09115 6.25409 6.67542 6.76274 6.89628 7.05865 7.08850 7.38022 7.48796 7.64045 7.76999 7.85580 8.09816 8.57378 8.71763 9.01887 9.41548 10.89419 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035266 B = 0.003593 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.770027 B = 7791.550383 C = 8263.963945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.062 3.938 3 C -0.279 4.279 4 C 0.058 3.942 5 N -0.362 5.362 6 C 0.176 3.824 7 H 0.111 0.889 8 C -0.166 4.166 9 C -0.155 4.155 10 C 0.508 3.492 11 O -0.553 6.553 12 N -0.705 5.705 13 C 0.264 3.736 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 N -0.295 5.295 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.171 0.829 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.390 0.610 36 H 0.015 0.985 37 H 0.026 0.974 38 H 0.091 0.909 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.321 13.987 4.636 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.309 4.309 4 C -0.089 4.089 5 N -0.143 5.143 6 C 0.075 3.925 7 H 0.129 0.871 8 C -0.224 4.224 9 C -0.196 4.196 10 C 0.292 3.708 11 O -0.434 6.434 12 N -0.352 5.352 13 C 0.162 3.838 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.574 4.574 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 N -0.118 5.118 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.161 0.839 29 H 0.188 0.812 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.222 0.778 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.685 12.108 5.396 17.671 hybrid contribution 0.060 0.737 -1.428 1.608 sum -11.626 12.845 3.968 17.774 Atomic orbital electron populations 1.20135 0.86983 1.03069 1.02685 1.22344 0.96868 0.90955 1.00236 1.21333 0.91683 0.99573 1.18290 1.22496 0.99486 0.85524 1.01351 1.48975 1.05132 1.04589 1.55609 1.20995 0.81262 0.94509 0.95768 0.87101 1.22321 0.99329 1.01595 0.99165 1.22093 0.99089 1.00899 0.97559 1.20035 0.83256 0.82644 0.84876 1.90637 1.65604 1.55211 1.31900 1.46535 1.36067 1.45141 1.07501 1.18771 0.81083 0.86113 0.97803 0.93254 1.22080 1.02037 0.99979 0.96443 1.21221 1.15729 1.22953 0.97528 0.92072 1.24886 0.95152 0.96282 0.97358 1.69893 1.17593 1.31949 1.32631 0.86439 0.78365 0.78738 0.83521 1.20520 1.21017 1.19827 1.77343 0.86703 1.22938 1.24812 0.90808 0.90672 0.91070 0.83886 0.81230 0.91992 0.87450 0.92344 0.88944 0.88622 0.77815 0.96636 0.95476 0.89088 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.01 0.38 -0.23 16 2 C 0.06 0.77 7.22 -82.41 -0.59 0.18 16 3 C -0.28 -3.10 10.74 -40.01 -0.43 -3.53 16 4 C 0.06 0.66 10.59 -17.22 -0.18 0.48 16 5 N -0.36 -4.93 3.53 -54.86 -0.19 -5.13 16 6 C 0.18 2.45 3.05 -67.93 -0.21 2.24 16 7 H 0.11 1.75 7.96 -51.93 -0.41 1.34 16 8 C -0.17 -2.07 8.57 37.16 0.32 -1.75 16 9 C -0.16 -2.18 5.50 -27.88 -0.15 -2.33 16 10 C 0.51 9.47 7.51 -10.99 -0.08 9.39 16 11 O -0.55 -12.11 13.63 5.56 0.08 -12.03 16 12 N -0.71 -14.17 5.07 -54.93 -0.28 -14.45 16 13 C 0.26 6.57 2.56 -69.08 -0.18 6.40 16 14 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 15 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 16 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -24.66 11.32 55.43 0.63 -24.03 16 20 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 N -0.30 -4.45 12.58 33.67 0.42 -4.03 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.17 1.40 7.25 -52.48 -0.38 1.02 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.11 1.61 5.95 -51.93 -0.31 1.30 16 32 H 0.06 0.60 7.15 -51.93 -0.37 0.23 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -31.01 326.19 -6.51 -37.52 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.88 Total: 6.79 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.18 Total: -5.06 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.58 Total: -47.63 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.01 -6.51 -37.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.861 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds