Wall clock time and date at job start Mon Mar 30 2020 04:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39866 * 125.89771 * 2 1 4 4 C 1.35317 * 107.91681 * 179.71780 * 3 2 1 5 5 N 1.34946 * 107.74617 * 0.42077 * 4 3 2 6 6 C 1.46504 * 126.03810 * 179.83817 * 5 4 3 7 7 H 1.09004 * 109.46969 * 154.72052 * 6 5 4 8 8 C 1.53002 * 109.46964 * 34.71959 * 6 5 4 9 9 C 1.52997 * 109.47216 * 274.72215 * 6 5 4 10 10 C 1.50705 * 109.47273 * 185.00141 * 9 6 5 11 11 O 1.21278 * 119.99744 * 359.97438 * 10 9 6 12 12 N 1.34768 * 120.00177 * 179.97438 * 10 9 6 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46845 * 35.00845 * 13 12 10 15 15 C 1.52997 * 109.47473 * 275.00296 * 13 12 10 16 16 C 1.50706 * 109.47187 * 154.99900 * 13 12 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 12 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.46754 * 90.00468 * 20 18 16 22 22 H 1.48498 * 109.47278 * 210.00299 * 20 18 16 23 23 H 1.48498 * 109.47109 * 330.00728 * 20 18 16 24 24 N 1.30830 * 125.89480 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47155 * 270.00409 * 1 2 3 26 26 H 1.08998 * 109.46824 * 30.00088 * 1 2 3 27 27 H 1.08998 * 109.47538 * 149.99569 * 1 2 3 28 28 H 1.07998 * 126.04048 * 359.97438 * 3 2 1 29 29 H 1.08004 * 126.12943 * 180.26941 * 4 3 2 30 30 H 1.08997 * 109.46930 * 59.99654 * 8 6 5 31 31 H 1.09001 * 109.46725 * 179.97438 * 8 6 5 32 32 H 1.09003 * 109.46963 * 300.00226 * 8 6 5 33 33 H 1.08996 * 109.47573 * 64.99757 * 9 6 5 34 34 H 1.09000 * 109.46857 * 304.99332 * 9 6 5 35 35 H 0.97001 * 120.00396 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 15 13 12 37 37 H 1.09001 * 109.46832 * 299.99948 * 15 13 12 38 38 H 1.09004 * 109.47261 * 179.97438 * 15 13 12 39 39 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0063 5 7 3.6087 -0.6341 0.0008 6 6 4.7899 -1.5009 0.0013 7 1 4.5315 -2.4668 0.4353 8 6 5.8996 -0.8500 0.8294 9 6 5.2762 -1.7010 -1.4355 10 6 6.4142 -2.6889 -1.4476 11 8 6.7987 -3.1838 -0.4093 12 7 7.0047 -3.0224 -2.6123 13 6 8.1113 -3.9824 -2.6240 14 1 7.9428 -4.7403 -1.8590 15 6 9.4241 -3.2509 -2.3370 16 6 8.1893 -4.6426 -3.9765 17 1 7.4853 -4.3736 -4.7500 18 6 9.1601 -5.5891 -4.2266 19 7 10.0177 -5.9162 -3.2848 20 14 9.2573 -6.4069 -5.9033 21 1 10.1510 -5.6170 -6.7881 22 1 9.7985 -7.7815 -5.7530 23 1 7.8998 -6.4720 -6.5017 24 7 2.2741 -1.0599 0.0005 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.9923 2.1598 -0.0004 29 1 4.4892 1.3484 0.0121 30 1 5.5531 -0.7074 1.8529 31 1 6.7783 -1.4952 0.8301 32 1 6.1579 0.1159 0.3953 33 1 5.6180 -0.7481 -1.8395 34 1 4.4578 -2.0821 -2.0463 35 1 6.6970 -2.6269 -3.4428 36 1 9.3676 -2.7734 -1.3587 37 1 9.5924 -2.4930 -3.1021 38 1 10.2474 -3.9653 -2.3453 39 1 10.7005 -6.5824 -3.4606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596998348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:41 Heat of formation + Delta-G solvation = 4.997686 kcal Electronic energy + Delta-G solvation = -19761.517860 eV Core-core repulsion = 16704.635126 eV Total energy + Delta-G solvation = -3056.882734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.20735 -40.71747 -37.16166 -36.19256 -34.35832 -32.67927 -31.20313 -30.87032 -28.79522 -28.15400 -27.34345 -24.24054 -22.85547 -21.35141 -20.94644 -20.64239 -18.99718 -18.17440 -17.26346 -17.00751 -16.55054 -16.21339 -15.70823 -15.31861 -14.92531 -14.74221 -14.37153 -14.26265 -14.03021 -13.81046 -13.57389 -13.37855 -13.05001 -13.00686 -12.87346 -12.77898 -12.63021 -12.35774 -12.28852 -12.18461 -12.14219 -11.46774 -11.11392 -10.78736 -10.58571 -10.18301 -9.76865 -9.45967 -8.19500 -6.36969 0.99598 1.43213 1.43941 1.46208 1.54852 1.74584 1.92033 2.35279 2.66071 3.11055 3.44569 3.63264 3.91457 3.96897 4.00243 4.18762 4.35947 4.47564 4.56836 4.73624 4.79293 4.81405 4.84211 4.86520 4.92874 4.99987 5.08832 5.08969 5.22622 5.30094 5.43228 5.59544 5.68333 5.83820 5.88879 6.09447 6.17418 6.70932 6.86257 6.91188 7.30298 7.50620 8.86560 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035266 B = 0.003593 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.770027 B = 7791.550383 C = 8263.963945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.055 3.945 3 C -0.283 4.283 4 C 0.058 3.942 5 N -0.374 5.374 6 C 0.181 3.819 7 H 0.080 0.920 8 C -0.157 4.157 9 C -0.136 4.136 10 C 0.507 3.493 11 O -0.589 6.589 12 N -0.704 5.704 13 C 0.270 3.730 14 H -0.001 1.001 15 C -0.133 4.133 16 C -0.550 4.550 17 H 0.072 0.928 18 C 0.015 3.985 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.266 1.266 24 N -0.348 5.348 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.171 0.829 29 H 0.203 0.797 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.405 0.595 36 H 0.017 0.983 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.472 16.347 3.365 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C -0.312 4.312 4 C -0.088 4.088 5 N -0.155 5.155 6 C 0.079 3.921 7 H 0.098 0.902 8 C -0.215 4.215 9 C -0.177 4.177 10 C 0.293 3.707 11 O -0.470 6.470 12 N -0.353 5.353 13 C 0.167 3.833 14 H 0.017 0.983 15 C -0.192 4.192 16 C -0.588 4.588 17 H 0.090 0.910 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.796 3.204 21 H -0.195 1.195 22 H -0.212 1.212 23 H -0.190 1.190 24 N -0.171 5.171 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.189 0.811 29 H 0.220 0.780 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.240 0.760 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.873 14.505 4.115 19.825 hybrid contribution 0.347 0.043 -0.953 1.016 sum -12.525 14.548 3.161 19.455 Atomic orbital electron populations 1.20273 0.84849 1.04010 1.03672 1.23022 0.98409 0.90965 0.98695 1.21741 0.91397 1.00500 1.17559 1.23116 1.00962 0.84665 1.00028 1.48860 1.04466 1.05343 1.56859 1.20766 0.82050 0.93810 0.95471 0.90173 1.22208 0.97547 1.02138 0.99654 1.21956 0.96871 1.00669 0.98186 1.20772 0.83649 0.82613 0.83654 1.90633 1.66759 1.56502 1.33148 1.46283 1.35409 1.44667 1.08918 1.18348 0.82822 0.86200 0.95923 0.98267 1.21889 1.00868 0.99449 0.96996 1.21569 1.15911 1.23231 0.98101 0.91035 1.25778 0.94796 0.96898 1.01031 1.70041 1.18221 1.32510 1.34691 0.85362 0.78659 0.77426 0.78999 1.19523 1.21231 1.18998 1.77313 0.87665 1.24843 1.27242 0.89712 0.88263 0.91584 0.81123 0.78045 0.91395 0.90212 0.89456 0.85659 0.88208 0.76016 0.96393 0.94055 0.91627 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.45 71.24 0.74 -0.32 16 2 C 0.05 1.27 7.22 43.10 0.31 1.58 16 3 C -0.28 -5.40 10.74 21.99 0.24 -5.17 16 4 C 0.06 1.13 10.59 83.54 0.88 2.02 16 5 N -0.37 -9.65 3.53 -327.48 -1.16 -10.80 16 6 C 0.18 4.94 3.05 44.99 0.14 5.08 16 7 H 0.08 2.65 7.96 -2.38 -0.02 2.63 16 8 C -0.16 -3.74 8.57 71.98 0.62 -3.12 16 9 C -0.14 -3.63 5.50 29.85 0.16 -3.46 16 10 C 0.51 18.92 7.51 87.66 0.66 19.58 16 11 O -0.59 -26.63 13.63 -3.02 -0.04 -26.67 16 12 N -0.70 -28.14 5.07 -446.10 -2.26 -30.40 16 13 C 0.27 13.76 2.56 44.25 0.11 13.87 16 14 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 15 C -0.13 -6.56 9.26 71.98 0.67 -5.89 16 16 C -0.55 -28.91 8.73 25.60 0.22 -28.69 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.02 0.81 5.30 84.65 0.45 1.26 16 19 N -0.92 -52.24 11.32 21.45 0.24 -51.99 16 20 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 N -0.35 -10.25 12.58 -47.39 -0.60 -10.85 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.20 2.42 7.25 -2.91 -0.02 2.40 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.40 5.95 -2.39 -0.01 2.39 16 32 H 0.09 1.53 7.15 -2.39 -0.02 1.51 16 33 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.40 13.60 8.54 -92.71 -0.79 12.81 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 3.57 6.07 -2.38 -0.01 3.56 16 39 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -69.31 326.19 3.67 -65.64 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.25 Total: 24.48 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.20 Total: -3.27 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.77 Total: -104.04 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.04 Total: -26.67 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.31 3.67 -65.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.637 kcal (2) G-P(sol) polarization free energy of solvation -69.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds