Wall clock time and date at job start Mon Mar 30 2020 04:33:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30844 * 125.89620 * 2 1
4 4 N 1.40086 * 108.20537 * 180.02562 * 3 2 1
5 5 C 1.46499 * 126.03748 * 180.02562 * 4 3 2
6 6 C 1.34949 * 107.92189 * 0.25805 * 4 3 2
7 7 C 1.35315 * 107.74973 * 359.58119 * 6 4 3
8 8 C 1.50696 * 126.03898 * 180.16094 * 7 6 4
9 9 H 1.09006 * 109.46926 * 145.31215 * 8 7 6
10 10 C 1.53003 * 109.46743 * 265.30453 * 8 7 6
11 11 N 1.46499 * 109.47569 * 25.30539 * 8 7 6
12 12 C 1.34773 * 119.99858 * 155.00035 * 11 8 7
13 13 O 1.21280 * 120.00301 * 0.02562 * 12 11 8
14 14 C 1.50699 * 119.99819 * 180.02562 * 12 11 8
15 15 H 1.09004 * 109.46915 * 299.99485 * 14 12 11
16 16 C 1.52999 * 109.47656 * 59.99589 * 14 12 11
17 17 C 1.50693 * 109.47247 * 180.02562 * 14 12 11
18 18 H 1.07999 * 120.00153 * 359.97438 * 17 14 12
19 19 C 1.37883 * 120.00307 * 179.97438 * 17 14 12
20 20 N 1.31509 * 119.99845 * 359.97438 * 19 17 14
21 21 Si 1.86804 * 120.00232 * 179.97438 * 19 17 14
22 22 H 1.48504 * 109.46917 * 0.02562 * 21 19 17
23 23 H 1.48503 * 109.46748 * 120.00075 * 21 19 17
24 24 H 1.48498 * 109.47202 * 240.00360 * 21 19 17
25 25 H 1.08999 * 109.47079 * 89.97963 * 1 2 3
26 26 H 1.09000 * 109.46806 * 209.97407 * 1 2 3
27 27 H 1.08995 * 109.47246 * 329.97742 * 1 2 3
28 28 H 1.09002 * 109.47391 * 90.01945 * 5 4 3
29 29 H 1.09001 * 109.46813 * 330.02001 * 5 4 3
30 30 H 1.09004 * 109.47041 * 210.02128 * 5 4 3
31 31 H 1.07999 * 126.12286 * 179.73805 * 6 4 3
32 32 H 1.09000 * 109.47429 * 60.00564 * 10 8 7
33 33 H 1.09008 * 109.46686 * 180.02562 * 10 8 7
34 34 H 1.09002 * 109.47616 * 299.99851 * 10 8 7
35 35 H 0.96999 * 119.99717 * 335.00084 * 11 8 7
36 36 H 1.08999 * 109.46639 * 59.99787 * 16 14 12
37 37 H 1.08992 * 109.47310 * 180.02562 * 16 14 12
38 38 H 1.09004 * 109.47206 * 300.00358 * 16 14 12
39 39 H 0.96997 * 120.00539 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2741 1.0599 0.0000
4 7 3.6087 0.6342 -0.0006
5 6 4.7898 1.5010 -0.0003
6 6 3.6142 -0.7152 -0.0067
7 6 2.3272 -1.1330 -0.0005
8 6 1.8601 -2.5657 -0.0006
9 1 0.9472 -2.6503 0.5891
10 6 1.5819 -3.0112 -1.4377
11 7 2.8990 -3.4182 0.5825
12 6 2.5657 -4.5949 1.1489
13 8 1.4058 -4.9482 1.1754
14 6 3.6344 -5.4715 1.7493
15 1 4.3553 -5.7450 0.9787
16 6 4.3483 -4.7115 2.8689
17 6 3.0034 -6.7192 2.3115
18 1 1.9353 -6.8628 2.2415
19 6 3.7897 -7.6775 2.9153
20 7 5.0904 -7.5029 3.0001
21 14 3.0074 -9.2238 3.6129
22 1 1.5397 -9.1793 3.3910
23 1 3.5746 -10.4156 2.9323
24 1 3.2861 -9.3058 5.0692
25 1 -0.3633 0.0004 -1.0277
26 1 -0.3633 -0.8902 0.5134
27 1 -0.3633 0.8897 0.5142
28 1 5.0833 1.7150 1.0275
29 1 4.5560 2.4339 -0.5131
30 1 5.6091 0.9989 -0.5150
31 1 4.4891 -1.3483 -0.0127
32 1 2.4947 -2.9267 -2.0274
33 1 1.2436 -4.0475 -1.4377
34 1 0.8088 -2.3770 -1.8716
35 1 3.8267 -3.1357 0.5610
36 1 3.6274 -4.4380 3.6393
37 1 5.1215 -5.3454 3.3028
38 1 4.8048 -3.8092 2.4618
39 1 5.6435 -8.1768 3.4252
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597117803.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:33:07
Heat of formation + Delta-G solvation = 28.298154 kcal
Electronic energy + Delta-G solvation = -20201.357177 eV
Core-core repulsion = 17145.484827 eV
Total energy + Delta-G solvation = -3055.872350 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.38048 -38.77335 -35.33853 -33.75759 -33.67157 -31.14337 -30.06691 -29.64124
-28.57462 -25.59008 -25.10094 -23.39379 -22.13937 -20.55004 -19.58505 -18.93736
-17.03984 -16.19108 -15.65535 -15.64053 -15.27775 -14.40454 -14.30868 -14.07462
-13.64922 -13.41726 -13.28628 -12.97838 -12.71482 -12.51365 -12.27898 -12.16367
-11.96648 -11.74712 -11.50012 -10.99408 -10.97193 -10.69399 -10.65651 -10.51656
-10.21119 -9.92286 -9.25215 -8.92665 -8.61090 -8.47545 -8.28720 -8.22387
-6.00251 -4.02647 1.81828 2.42607 2.69725 3.34539 3.42012 3.50692
3.81986 3.97915 4.36796 4.51148 4.72413 4.90278 4.95446 5.12091
5.18790 5.29357 5.33342 5.55807 5.58493 5.68871 5.80318 5.83312
5.93795 6.05030 6.14944 6.42917 6.50440 6.63923 6.64839 6.86342
6.93422 6.96889 7.20924 7.51629 7.67373 7.78880 8.03434 8.19892
8.51498 9.07250 9.32354 9.63032 11.07529
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.029988 B = 0.004465 C = 0.004087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 933.478419 B = 6269.602760 C = 6849.025977
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.085 3.915
3 N -0.300 5.300
4 N -0.378 5.378
5 C 0.104 3.896
6 C 0.061 3.939
7 C -0.232 4.232
8 C 0.220 3.780
9 H 0.089 0.911
10 C -0.153 4.153
11 N -0.741 5.741
12 C 0.521 3.479
13 O -0.545 6.545
14 C 0.028 3.972
15 H 0.051 0.949
16 C -0.131 4.131
17 C -0.497 4.497
18 H 0.075 0.925
19 C 0.057 3.943
20 N -0.898 5.898
21 Si 0.898 3.102
22 H -0.271 1.271
23 H -0.285 1.285
24 H -0.285 1.285
25 H 0.077 0.923
26 H 0.081 0.919
27 H 0.071 0.929
28 H 0.074 0.926
29 H 0.086 0.914
30 H 0.087 0.913
31 H 0.172 0.828
32 H 0.051 0.949
33 H 0.064 0.936
34 H 0.057 0.943
35 H 0.390 0.610
36 H 0.031 0.969
37 H 0.092 0.908
38 H 0.010 0.990
39 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.173 16.469 -7.454 18.078
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.082 4.082
3 N -0.123 5.123
4 N -0.160 5.160
5 C -0.038 4.038
6 C -0.085 4.085
7 C -0.243 4.243
8 C 0.114 3.886
9 H 0.107 0.893
10 C -0.212 4.212
11 N -0.395 5.395
12 C 0.311 3.689
13 O -0.421 6.421
14 C 0.007 3.993
15 H 0.069 0.931
16 C -0.189 4.189
17 C -0.536 4.536
18 H 0.093 0.907
19 C -0.143 4.143
20 N -0.538 5.538
21 Si 0.726 3.274
22 H -0.195 1.195
23 H -0.211 1.211
24 H -0.211 1.211
25 H 0.096 0.904
26 H 0.100 0.900
27 H 0.090 0.910
28 H 0.092 0.908
29 H 0.105 0.895
30 H 0.105 0.895
31 H 0.189 0.811
32 H 0.070 0.930
33 H 0.083 0.917
34 H 0.076 0.924
35 H 0.224 0.776
36 H 0.050 0.950
37 H 0.111 0.889
38 H 0.029 0.971
39 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -0.687 17.474 -7.352 18.970
hybrid contribution 0.453 -1.461 0.382 1.577
sum -0.234 16.013 -6.970 17.466
Atomic orbital electron populations
1.20220 0.86645 1.03531 1.02995 1.22163 0.96883 0.89920 0.99219
1.77266 0.86399 1.22651 1.25983 1.48285 1.05472 1.04649 1.57593
1.21831 0.83683 0.94876 1.03369 1.22193 0.99272 0.84796 1.02218
1.20132 0.92099 0.96058 1.16051 1.18929 0.92245 0.83255 0.94215
0.89331 1.22131 1.01233 1.01922 0.95887 1.46367 1.09720 1.21476
1.61898 1.21917 0.91612 0.80071 0.75326 1.90522 1.21417 1.72416
1.57761 1.18873 0.92120 0.93134 0.95164 0.93104 1.21728 1.01203
0.97082 0.98883 1.21202 0.95058 1.01114 1.36208 0.90690 1.24951
0.94816 0.98474 0.96077 1.69876 1.03934 1.34956 1.45010 0.86418
0.79815 0.82683 0.78467 1.19530 1.21103 1.21112 0.90449 0.90039
0.90988 0.90784 0.89497 0.89460 0.81061 0.92961 0.91728 0.92368
0.77587 0.95025 0.88940 0.97124 0.93103
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.80 10.26 36.00 0.37 -0.43 16
2 C 0.08 1.15 7.22 -82.40 -0.59 0.56 16
3 N -0.30 -4.21 12.58 33.67 0.42 -3.79 16
4 N -0.38 -4.51 4.01 -68.16 -0.27 -4.78 16
5 C 0.10 0.75 11.47 59.85 0.69 1.44 16
6 C 0.06 0.75 10.66 -17.22 -0.18 0.56 16
7 C -0.23 -3.21 5.22 -105.06 -0.55 -3.76 16
8 C 0.22 3.41 2.81 -69.08 -0.19 3.21 16
9 H 0.09 1.53 6.85 -51.93 -0.36 1.17 16
10 C -0.15 -2.17 9.47 37.16 0.35 -1.82 16
11 N -0.74 -12.91 4.93 -54.93 -0.27 -13.19 16
12 C 0.52 11.82 7.11 -10.99 -0.08 11.74 16
13 O -0.55 -14.12 15.12 5.56 0.08 -14.04 16
14 C 0.03 0.70 2.64 -92.93 -0.24 0.45 16
15 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16
16 C -0.13 -3.00 8.87 37.16 0.33 -2.68 16
17 C -0.50 -14.13 8.37 -34.44 -0.29 -14.42 16
18 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16
19 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16
20 N -0.90 -25.19 11.32 55.43 0.63 -24.57 16
21 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16
22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16
23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16
25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
26 H 0.08 0.86 7.37 -51.93 -0.38 0.47 16
27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16
31 H 0.17 1.65 7.06 -52.49 -0.37 1.28 16
32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16
34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.39 5.87 6.42 -40.82 -0.26 5.61 16
36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16
38 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16
39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16
LS Contribution 326.05 15.07 4.91 4.91
Total: -1.00 -33.59 326.05 -5.80 -39.40
By element:
Atomic # 1 Polarization: 8.64 SS G_CDS: -5.80 Total: 2.85 kcal
Atomic # 6 Polarization: -3.16 SS G_CDS: -0.49 Total: -3.65 kcal
Atomic # 7 Polarization: -46.83 SS G_CDS: 0.51 Total: -46.32 kcal
Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -33.59 -5.80 -39.40 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597117803.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.693 kcal
(2) G-P(sol) polarization free energy of solvation -33.592 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.298 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds