Wall clock time and date at job start Mon Mar 30 2020 04:33:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30844 * 125.89620 * 2 1
4 4 N 1.40086 * 108.20537 * 180.02562 * 3 2 1
5 5 C 1.46499 * 126.03748 * 180.02562 * 4 3 2
6 6 C 1.34949 * 107.92189 * 0.25805 * 4 3 2
7 7 C 1.35315 * 107.74973 * 359.58119 * 6 4 3
8 8 C 1.50696 * 126.03898 * 180.16094 * 7 6 4
9 9 H 1.09006 * 109.46926 * 145.31215 * 8 7 6
10 10 C 1.53003 * 109.46743 * 265.30453 * 8 7 6
11 11 N 1.46499 * 109.47569 * 25.30539 * 8 7 6
12 12 C 1.34773 * 119.99858 * 155.00035 * 11 8 7
13 13 O 1.21280 * 120.00301 * 0.02562 * 12 11 8
14 14 C 1.50699 * 119.99819 * 180.02562 * 12 11 8
15 15 H 1.09004 * 109.46915 * 299.99485 * 14 12 11
16 16 C 1.52999 * 109.47656 * 59.99589 * 14 12 11
17 17 C 1.50693 * 109.47247 * 180.02562 * 14 12 11
18 18 H 1.07999 * 120.00153 * 359.97438 * 17 14 12
19 19 C 1.37883 * 120.00307 * 179.97438 * 17 14 12
20 20 N 1.31509 * 119.99845 * 359.97438 * 19 17 14
21 21 Si 1.86804 * 120.00232 * 179.97438 * 19 17 14
22 22 H 1.48504 * 109.46917 * 0.02562 * 21 19 17
23 23 H 1.48503 * 109.46748 * 120.00075 * 21 19 17
24 24 H 1.48498 * 109.47202 * 240.00360 * 21 19 17
25 25 H 1.08999 * 109.47079 * 89.97963 * 1 2 3
26 26 H 1.09000 * 109.46806 * 209.97407 * 1 2 3
27 27 H 1.08995 * 109.47246 * 329.97742 * 1 2 3
28 28 H 1.09002 * 109.47391 * 90.01945 * 5 4 3
29 29 H 1.09001 * 109.46813 * 330.02001 * 5 4 3
30 30 H 1.09004 * 109.47041 * 210.02128 * 5 4 3
31 31 H 1.07999 * 126.12286 * 179.73805 * 6 4 3
32 32 H 1.09000 * 109.47429 * 60.00564 * 10 8 7
33 33 H 1.09008 * 109.46686 * 180.02562 * 10 8 7
34 34 H 1.09002 * 109.47616 * 299.99851 * 10 8 7
35 35 H 0.96999 * 119.99717 * 335.00084 * 11 8 7
36 36 H 1.08999 * 109.46639 * 59.99787 * 16 14 12
37 37 H 1.08992 * 109.47310 * 180.02562 * 16 14 12
38 38 H 1.09004 * 109.47206 * 300.00358 * 16 14 12
39 39 H 0.96997 * 120.00539 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2741 1.0599 0.0000
4 7 3.6087 0.6342 -0.0006
5 6 4.7898 1.5010 -0.0003
6 6 3.6142 -0.7152 -0.0067
7 6 2.3272 -1.1330 -0.0005
8 6 1.8601 -2.5657 -0.0006
9 1 0.9472 -2.6503 0.5891
10 6 1.5819 -3.0112 -1.4377
11 7 2.8990 -3.4182 0.5825
12 6 2.5657 -4.5949 1.1489
13 8 1.4058 -4.9482 1.1754
14 6 3.6344 -5.4715 1.7493
15 1 4.3553 -5.7450 0.9787
16 6 4.3483 -4.7115 2.8689
17 6 3.0034 -6.7192 2.3115
18 1 1.9353 -6.8628 2.2415
19 6 3.7897 -7.6775 2.9153
20 7 5.0904 -7.5029 3.0001
21 14 3.0074 -9.2238 3.6129
22 1 1.5397 -9.1793 3.3910
23 1 3.5746 -10.4156 2.9323
24 1 3.2861 -9.3058 5.0692
25 1 -0.3633 0.0004 -1.0277
26 1 -0.3633 -0.8902 0.5134
27 1 -0.3633 0.8897 0.5142
28 1 5.0833 1.7150 1.0275
29 1 4.5560 2.4339 -0.5131
30 1 5.6091 0.9989 -0.5150
31 1 4.4891 -1.3483 -0.0127
32 1 2.4947 -2.9267 -2.0274
33 1 1.2436 -4.0475 -1.4377
34 1 0.8088 -2.3770 -1.8716
35 1 3.8267 -3.1357 0.5610
36 1 3.6274 -4.4380 3.6393
37 1 5.1215 -5.3454 3.3028
38 1 4.8048 -3.8092 2.4618
39 1 5.6435 -8.1768 3.4252
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597117803.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:33:07
Heat of formation + Delta-G solvation = 5.764770 kcal
Electronic energy + Delta-G solvation = -20202.334297 eV
Core-core repulsion = 17145.484827 eV
Total energy + Delta-G solvation = -3056.849471 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-42.35194 -40.47977 -36.72431 -35.70384 -34.73088 -32.91500 -31.32391 -30.74864
-29.62670 -27.16819 -26.44294 -24.93252 -23.47999 -21.86327 -20.76306 -20.30201
-18.40658 -18.13754 -17.05869 -16.85373 -16.51300 -16.26081 -15.68864 -15.31973
-14.89001 -14.58609 -14.46582 -14.26735 -13.96910 -13.76027 -13.42445 -13.28932
-13.00615 -12.96080 -12.89356 -12.84741 -12.61912 -12.55641 -12.21137 -12.07231
-11.99484 -11.58278 -10.99409 -10.56532 -10.24955 -10.17705 -9.97433 -9.29909
-8.12465 -6.21833 0.88681 1.40953 1.43220 1.56617 1.64699 1.67682
2.02514 2.39403 2.58304 3.17401 3.53217 3.86097 4.03287 4.22118
4.38320 4.43238 4.46221 4.48583 4.50699 4.71030 4.78081 4.78654
4.79701 4.86723 4.97457 5.02020 5.04446 5.11874 5.18402 5.30520
5.54067 5.65944 5.73511 5.80731 5.98312 6.10355 6.25716 6.71675
6.80029 6.92013 7.44063 7.62327 8.93512
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.029988 B = 0.004465 C = 0.004087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 933.478419 B = 6269.602760 C = 6849.025977
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.075 3.925
3 N -0.326 5.326
4 N -0.376 5.376
5 C 0.093 3.907
6 C 0.068 3.932
7 C -0.254 4.254
8 C 0.225 3.775
9 H 0.067 0.933
10 C -0.146 4.146
11 N -0.719 5.719
12 C 0.524 3.476
13 O -0.585 6.585
14 C 0.024 3.976
15 H 0.043 0.957
16 C -0.118 4.118
17 C -0.526 4.526
18 H 0.048 0.952
19 C 0.020 3.980
20 N -0.911 5.911
21 Si 0.953 3.047
22 H -0.280 1.280
23 H -0.274 1.274
24 H -0.275 1.275
25 H 0.092 0.908
26 H 0.077 0.923
27 H 0.078 0.922
28 H 0.084 0.916
29 H 0.093 0.907
30 H 0.115 0.885
31 H 0.199 0.801
32 H 0.064 0.936
33 H 0.038 0.962
34 H 0.078 0.922
35 H 0.405 0.595
36 H 0.019 0.981
37 H 0.070 0.930
38 H 0.052 0.948
39 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.008 17.622 -7.918 19.346
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.091 4.091
3 N -0.150 5.150
4 N -0.157 5.157
5 C -0.047 4.047
6 C -0.080 4.080
7 C -0.266 4.266
8 C 0.120 3.880
9 H 0.085 0.915
10 C -0.204 4.204
11 N -0.372 5.372
12 C 0.313 3.687
13 O -0.465 6.465
14 C 0.003 3.997
15 H 0.061 0.939
16 C -0.176 4.176
17 C -0.564 4.564
18 H 0.066 0.934
19 C -0.179 4.179
20 N -0.551 5.551
21 Si 0.779 3.221
22 H -0.205 1.205
23 H -0.200 1.200
24 H -0.201 1.201
25 H 0.111 0.889
26 H 0.096 0.904
27 H 0.097 0.903
28 H 0.102 0.898
29 H 0.112 0.888
30 H 0.134 0.866
31 H 0.215 0.785
32 H 0.083 0.917
33 H 0.057 0.943
34 H 0.097 0.903
35 H 0.241 0.759
36 H 0.038 0.962
37 H 0.089 0.911
38 H 0.071 0.929
39 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 0.539 18.689 -7.833 20.271
hybrid contribution 0.153 -1.734 0.499 1.811
sum 0.692 16.954 -7.334 18.486
Atomic orbital electron populations
1.20295 0.85415 1.03672 1.04054 1.22512 0.97982 0.89701 0.98882
1.77228 0.87589 1.23169 1.27033 1.48670 1.05811 1.05078 1.56185
1.22223 0.82825 0.94998 1.04611 1.22577 0.99476 0.85363 1.00540
1.19969 0.93180 0.94828 1.18658 1.18895 0.90706 0.84126 0.94302
0.91517 1.22058 1.02465 1.00621 0.95305 1.46076 1.11114 1.19876
1.60134 1.21489 0.90373 0.81260 0.75616 1.90504 1.22657 1.73701
1.59610 1.18811 0.92476 0.92936 0.95515 0.93904 1.21542 1.00067
0.98094 0.97914 1.21333 0.94075 1.03422 1.37612 0.93385 1.25568
0.95374 1.00830 0.96146 1.69944 1.04473 1.35709 1.44942 0.85578
0.78423 0.79787 0.78308 1.20485 1.19991 1.20059 0.88900 0.90433
0.90274 0.89775 0.88811 0.86646 0.78450 0.91676 0.94321 0.90298
0.75867 0.96174 0.91120 0.92937 0.92683
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.55 10.26 71.24 0.73 -0.82 16
2 C 0.08 1.94 7.22 43.10 0.31 2.25 16
3 N -0.33 -8.61 12.58 -47.38 -0.60 -9.20 16
4 N -0.38 -7.97 4.01 -369.56 -1.48 -9.45 16
5 C 0.09 1.05 11.47 127.77 1.47 2.52 16
6 C 0.07 1.46 10.66 83.54 0.89 2.36 16
7 C -0.25 -6.61 5.22 -20.15 -0.11 -6.71 16
8 C 0.23 6.80 2.81 44.25 0.12 6.93 16
9 H 0.07 2.33 6.85 -2.38 -0.02 2.32 16
10 C -0.15 -4.00 9.47 71.98 0.68 -3.32 16
11 N -0.72 -24.29 4.93 -446.10 -2.20 -26.49 16
12 C 0.52 23.90 7.11 87.66 0.62 24.52 16
13 O -0.59 -31.19 15.12 -3.03 -0.05 -31.23 16
14 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16
15 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16
16 C -0.12 -5.33 8.87 71.98 0.64 -4.69 16
17 C -0.53 -30.49 8.37 25.60 0.21 -30.28 16
18 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16
19 C 0.02 1.10 5.30 84.66 0.45 1.55 16
20 N -0.91 -50.84 11.32 21.45 0.24 -50.60 16
21 Si 0.95 45.01 29.54 68.60 2.03 47.04 16
22 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16
23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16
24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16
25 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16
26 H 0.08 1.62 7.37 -2.39 -0.02 1.60 16
27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
30 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16
31 H 0.20 3.02 7.06 -2.91 -0.02 3.00 16
32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
33 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16
34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
35 H 0.41 11.20 6.42 -92.71 -0.60 10.60 16
36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16
37 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16
38 H 0.05 1.87 7.57 -2.38 -0.02 1.85 16
39 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16
Total: -1.00 -73.16 326.05 4.39 -68.77
By element:
Atomic # 1 Polarization: 15.25 SS G_CDS: 0.45 Total: 15.70 kcal
Atomic # 6 Polarization: -10.53 SS G_CDS: 5.99 Total: -4.54 kcal
Atomic # 7 Polarization: -91.70 SS G_CDS: -4.04 Total: -95.74 kcal
Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.23 kcal
Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal
Total: -73.16 4.39 -68.77 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597117803.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.538 kcal
(2) G-P(sol) polarization free energy of solvation -73.162 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.765 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds