Wall clock time and date at job start Mon Mar 30 2020 04:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30844 * 125.89620 * 2 1 4 4 N 1.40086 * 108.20537 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03748 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92189 * 0.25805 * 4 3 2 7 7 C 1.35315 * 107.74973 * 359.58119 * 6 4 3 8 8 C 1.50696 * 126.03898 * 180.16094 * 7 6 4 9 9 H 1.09006 * 109.46926 * 145.31215 * 8 7 6 10 10 C 1.53003 * 109.46743 * 265.30453 * 8 7 6 11 11 N 1.46499 * 109.47569 * 25.30539 * 8 7 6 12 12 C 1.34773 * 119.99858 * 155.00035 * 11 8 7 13 13 O 1.21280 * 120.00301 * 0.02562 * 12 11 8 14 14 C 1.50699 * 119.99819 * 180.02562 * 12 11 8 15 15 H 1.09004 * 109.46915 * 299.99485 * 14 12 11 16 16 C 1.52999 * 109.47656 * 59.99589 * 14 12 11 17 17 C 1.50693 * 109.47247 * 180.02562 * 14 12 11 18 18 H 1.07999 * 120.00153 * 359.97438 * 17 14 12 19 19 C 1.37883 * 120.00307 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99845 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 120.00232 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.46917 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46748 * 120.00075 * 21 19 17 24 24 H 1.48498 * 109.47202 * 240.00360 * 21 19 17 25 25 H 1.08999 * 109.47079 * 89.97963 * 1 2 3 26 26 H 1.09000 * 109.46806 * 209.97407 * 1 2 3 27 27 H 1.08995 * 109.47246 * 329.97742 * 1 2 3 28 28 H 1.09002 * 109.47391 * 90.01945 * 5 4 3 29 29 H 1.09001 * 109.46813 * 330.02001 * 5 4 3 30 30 H 1.09004 * 109.47041 * 210.02128 * 5 4 3 31 31 H 1.07999 * 126.12286 * 179.73805 * 6 4 3 32 32 H 1.09000 * 109.47429 * 60.00564 * 10 8 7 33 33 H 1.09008 * 109.46686 * 180.02562 * 10 8 7 34 34 H 1.09002 * 109.47616 * 299.99851 * 10 8 7 35 35 H 0.96999 * 119.99717 * 335.00084 * 11 8 7 36 36 H 1.08999 * 109.46639 * 59.99787 * 16 14 12 37 37 H 1.08992 * 109.47310 * 180.02562 * 16 14 12 38 38 H 1.09004 * 109.47206 * 300.00358 * 16 14 12 39 39 H 0.96997 * 120.00539 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5010 -0.0003 6 6 3.6142 -0.7152 -0.0067 7 6 2.3272 -1.1330 -0.0005 8 6 1.8601 -2.5657 -0.0006 9 1 0.9472 -2.6503 0.5891 10 6 1.5819 -3.0112 -1.4377 11 7 2.8990 -3.4182 0.5825 12 6 2.5657 -4.5949 1.1489 13 8 1.4058 -4.9482 1.1754 14 6 3.6344 -5.4715 1.7493 15 1 4.3553 -5.7450 0.9787 16 6 4.3483 -4.7115 2.8689 17 6 3.0034 -6.7192 2.3115 18 1 1.9353 -6.8628 2.2415 19 6 3.7897 -7.6775 2.9153 20 7 5.0904 -7.5029 3.0001 21 14 3.0074 -9.2238 3.6129 22 1 1.5397 -9.1793 3.3910 23 1 3.5746 -10.4156 2.9323 24 1 3.2861 -9.3058 5.0692 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 5.0833 1.7150 1.0275 29 1 4.5560 2.4339 -0.5131 30 1 5.6091 0.9989 -0.5150 31 1 4.4891 -1.3483 -0.0127 32 1 2.4947 -2.9267 -2.0274 33 1 1.2436 -4.0475 -1.4377 34 1 0.8088 -2.3770 -1.8716 35 1 3.8267 -3.1357 0.5610 36 1 3.6274 -4.4380 3.6393 37 1 5.1215 -5.3454 3.3028 38 1 4.8048 -3.8092 2.4618 39 1 5.6435 -8.1768 3.4252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597117803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:07 Heat of formation + Delta-G solvation = 5.764770 kcal Electronic energy + Delta-G solvation = -20202.334297 eV Core-core repulsion = 17145.484827 eV Total energy + Delta-G solvation = -3056.849471 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.35194 -40.47977 -36.72431 -35.70384 -34.73088 -32.91500 -31.32391 -30.74864 -29.62670 -27.16819 -26.44294 -24.93252 -23.47999 -21.86327 -20.76306 -20.30201 -18.40658 -18.13754 -17.05869 -16.85373 -16.51300 -16.26081 -15.68864 -15.31973 -14.89001 -14.58609 -14.46582 -14.26735 -13.96910 -13.76027 -13.42445 -13.28932 -13.00615 -12.96080 -12.89356 -12.84741 -12.61912 -12.55641 -12.21137 -12.07231 -11.99484 -11.58278 -10.99409 -10.56532 -10.24955 -10.17705 -9.97433 -9.29909 -8.12465 -6.21833 0.88681 1.40953 1.43220 1.56617 1.64699 1.67682 2.02514 2.39403 2.58304 3.17401 3.53217 3.86097 4.03287 4.22118 4.38320 4.43238 4.46221 4.48583 4.50699 4.71030 4.78081 4.78654 4.79701 4.86723 4.97457 5.02020 5.04446 5.11874 5.18402 5.30520 5.54067 5.65944 5.73511 5.80731 5.98312 6.10355 6.25716 6.71675 6.80029 6.92013 7.44063 7.62327 8.93512 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029988 B = 0.004465 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.478419 B = 6269.602760 C = 6849.025977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.075 3.925 3 N -0.326 5.326 4 N -0.376 5.376 5 C 0.093 3.907 6 C 0.068 3.932 7 C -0.254 4.254 8 C 0.225 3.775 9 H 0.067 0.933 10 C -0.146 4.146 11 N -0.719 5.719 12 C 0.524 3.476 13 O -0.585 6.585 14 C 0.024 3.976 15 H 0.043 0.957 16 C -0.118 4.118 17 C -0.526 4.526 18 H 0.048 0.952 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.953 3.047 22 H -0.280 1.280 23 H -0.274 1.274 24 H -0.275 1.275 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.199 0.801 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.405 0.595 36 H 0.019 0.981 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 17.622 -7.918 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 N -0.150 5.150 4 N -0.157 5.157 5 C -0.047 4.047 6 C -0.080 4.080 7 C -0.266 4.266 8 C 0.120 3.880 9 H 0.085 0.915 10 C -0.204 4.204 11 N -0.372 5.372 12 C 0.313 3.687 13 O -0.465 6.465 14 C 0.003 3.997 15 H 0.061 0.939 16 C -0.176 4.176 17 C -0.564 4.564 18 H 0.066 0.934 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.779 3.221 22 H -0.205 1.205 23 H -0.200 1.200 24 H -0.201 1.201 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.215 0.785 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.241 0.759 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.539 18.689 -7.833 20.271 hybrid contribution 0.153 -1.734 0.499 1.811 sum 0.692 16.954 -7.334 18.486 Atomic orbital electron populations 1.20295 0.85415 1.03672 1.04054 1.22512 0.97982 0.89701 0.98882 1.77228 0.87589 1.23169 1.27033 1.48670 1.05811 1.05078 1.56185 1.22223 0.82825 0.94998 1.04611 1.22577 0.99476 0.85363 1.00540 1.19969 0.93180 0.94828 1.18658 1.18895 0.90706 0.84126 0.94302 0.91517 1.22058 1.02465 1.00621 0.95305 1.46076 1.11114 1.19876 1.60134 1.21489 0.90373 0.81260 0.75616 1.90504 1.22657 1.73701 1.59610 1.18811 0.92476 0.92936 0.95515 0.93904 1.21542 1.00067 0.98094 0.97914 1.21333 0.94075 1.03422 1.37612 0.93385 1.25568 0.95374 1.00830 0.96146 1.69944 1.04473 1.35709 1.44942 0.85578 0.78423 0.79787 0.78308 1.20485 1.19991 1.20059 0.88900 0.90433 0.90274 0.89775 0.88811 0.86646 0.78450 0.91676 0.94321 0.90298 0.75867 0.96174 0.91120 0.92937 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.26 71.24 0.73 -0.82 16 2 C 0.08 1.94 7.22 43.10 0.31 2.25 16 3 N -0.33 -8.61 12.58 -47.38 -0.60 -9.20 16 4 N -0.38 -7.97 4.01 -369.56 -1.48 -9.45 16 5 C 0.09 1.05 11.47 127.77 1.47 2.52 16 6 C 0.07 1.46 10.66 83.54 0.89 2.36 16 7 C -0.25 -6.61 5.22 -20.15 -0.11 -6.71 16 8 C 0.23 6.80 2.81 44.25 0.12 6.93 16 9 H 0.07 2.33 6.85 -2.38 -0.02 2.32 16 10 C -0.15 -4.00 9.47 71.98 0.68 -3.32 16 11 N -0.72 -24.29 4.93 -446.10 -2.20 -26.49 16 12 C 0.52 23.90 7.11 87.66 0.62 24.52 16 13 O -0.59 -31.19 15.12 -3.03 -0.05 -31.23 16 14 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16 15 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 16 C -0.12 -5.33 8.87 71.98 0.64 -4.69 16 17 C -0.53 -30.49 8.37 25.60 0.21 -30.28 16 18 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 19 C 0.02 1.10 5.30 84.66 0.45 1.55 16 20 N -0.91 -50.84 11.32 21.45 0.24 -50.60 16 21 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 22 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.62 7.37 -2.39 -0.02 1.60 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.20 3.02 7.06 -2.91 -0.02 3.00 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.41 11.20 6.42 -92.71 -0.60 10.60 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 38 H 0.05 1.87 7.57 -2.38 -0.02 1.85 16 39 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -73.16 326.05 4.39 -68.77 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.45 Total: 15.70 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.99 Total: -4.54 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -4.04 Total: -95.74 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.23 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.16 4.39 -68.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597117803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.538 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds