Wall clock time and date at job start Mon Mar 30 2020 04:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30844 * 125.89786 * 2 1 4 4 N 1.40086 * 108.20441 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03756 * 180.02562 * 4 3 2 6 6 C 1.34954 * 107.92535 * 359.76089 * 4 3 2 7 7 C 1.50697 * 126.12673 * 180.23323 * 6 4 3 8 8 C 1.35315 * 107.74355 * 0.38885 * 6 4 3 9 9 C 1.50699 * 126.03507 * 179.87727 * 8 6 4 10 10 N 1.46503 * 109.46803 * 269.70988 * 9 8 6 11 11 C 1.34775 * 119.99820 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00430 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00047 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.47478 * 59.99861 * 13 11 10 15 15 C 1.53001 * 109.47259 * 299.99675 * 13 11 10 16 16 C 1.50703 * 109.47552 * 179.97438 * 13 11 10 17 17 H 1.08004 * 119.99320 * 35.05044 * 16 13 11 18 18 C 1.37870 * 120.00499 * 215.32879 * 16 13 11 19 19 N 1.31516 * 120.00485 * 184.55831 * 18 16 13 20 20 Si 1.86800 * 119.99940 * 4.55473 * 18 16 13 21 21 H 1.48504 * 109.46963 * 85.12118 * 20 18 16 22 22 H 1.48497 * 109.47280 * 205.12160 * 20 18 16 23 23 H 1.48498 * 109.47302 * 325.12244 * 20 18 16 24 24 H 1.08992 * 109.46897 * 270.02206 * 1 2 3 25 25 H 1.08997 * 109.46914 * 30.02511 * 1 2 3 26 26 H 1.08998 * 109.46794 * 150.01961 * 1 2 3 27 27 H 1.09000 * 109.47010 * 89.97667 * 5 4 3 28 28 H 1.09003 * 109.46900 * 209.97965 * 5 4 3 29 29 H 1.09004 * 109.46784 * 329.97299 * 5 4 3 30 30 H 1.08997 * 109.47386 * 270.18025 * 7 6 4 31 31 H 1.09009 * 109.46869 * 30.18535 * 7 6 4 32 32 H 1.09000 * 109.47145 * 150.17688 * 7 6 4 33 33 H 1.09000 * 109.46961 * 149.71593 * 9 8 6 34 34 H 1.08994 * 109.47856 * 29.71067 * 9 8 6 35 35 H 0.97004 * 120.00239 * 0.02562 * 10 9 8 36 36 H 1.09002 * 109.47159 * 65.13455 * 15 13 11 37 37 H 1.09000 * 109.47373 * 185.13201 * 15 13 11 38 38 H 1.09000 * 109.47220 * 305.13268 * 15 13 11 39 39 H 0.97000 * 120.00593 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6142 -0.7154 0.0063 7 6 4.8350 -1.5989 0.0139 8 6 2.3272 -1.1330 0.0005 9 6 1.8600 -2.5657 0.0012 10 7 1.7092 -3.0308 -1.3799 11 6 1.2981 -4.2906 -1.6256 12 8 1.0533 -5.0394 -0.7035 13 6 1.1435 -4.7692 -3.0462 14 1 2.1028 -4.7005 -3.5592 15 6 0.1149 -3.8971 -3.7691 16 6 0.6762 -6.2019 -3.0456 17 1 -0.0026 -6.5481 -2.2802 18 6 1.1196 -7.0721 -4.0187 19 7 0.6436 -8.2969 -4.0721 20 14 2.3965 -6.5114 -5.2615 21 1 3.7554 -6.6879 -4.6890 22 1 2.2718 -7.3220 -6.4995 23 1 2.1776 -5.0785 -5.5840 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 5.0821 1.7159 1.0292 28 1 5.6097 0.9981 -0.5119 29 1 4.5567 2.4332 -0.5129 30 1 5.1345 -1.8136 -1.0119 31 1 5.6486 -1.0900 0.5311 32 1 4.6050 -2.5320 0.5282 33 1 0.9010 -2.6349 0.5146 34 1 2.5932 -3.1868 0.5156 35 1 1.9053 -2.4320 -2.1175 36 1 0.4947 -2.8786 -3.8499 37 1 -0.0644 -4.2981 -4.7667 38 1 -0.8182 -3.8933 -3.2058 39 1 0.9559 -8.9093 -4.7566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597317109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:59 Heat of formation + Delta-G solvation = 25.366021 kcal Electronic energy + Delta-G solvation = -20158.908140 eV Core-core repulsion = 17102.908643 eV Total energy + Delta-G solvation = -3055.999497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.51376 -38.68751 -34.85585 -33.94037 -33.56665 -32.01242 -31.07660 -29.67050 -28.05287 -26.05846 -25.19314 -24.41174 -22.06031 -19.80808 -19.60399 -19.14035 -16.98296 -16.66732 -15.96614 -15.79403 -15.04281 -14.58289 -14.10884 -13.92143 -13.85421 -13.59700 -13.36362 -13.03633 -12.94157 -12.78942 -12.49543 -12.22006 -12.11465 -12.04321 -11.98674 -11.74207 -11.24692 -11.06468 -10.75126 -10.54135 -10.20077 -9.77795 -9.15847 -9.10779 -8.84447 -8.54317 -8.35582 -8.23255 -6.02050 -4.00619 1.69227 2.33183 2.54414 3.27262 3.33979 3.36180 3.75185 4.17745 4.29673 4.42298 4.46052 4.78756 4.85069 4.96143 5.09725 5.20167 5.25746 5.29506 5.31010 5.51116 5.59973 5.65226 5.85502 5.90953 6.01664 6.16456 6.20922 6.24417 6.49274 6.59624 6.60899 6.87923 6.90723 7.14331 7.24431 7.62333 7.62994 8.29277 8.61572 9.14389 9.27712 9.58216 11.11435 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.004740 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.163681 B = 5905.649136 C = 6271.030339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.094 3.906 3 N -0.303 5.303 4 N -0.378 5.378 5 C 0.103 3.897 6 C 0.103 3.897 7 C -0.096 4.096 8 C -0.251 4.251 9 C 0.201 3.799 10 N -0.744 5.744 11 C 0.518 3.482 12 O -0.532 6.532 13 C -0.005 4.005 14 H 0.052 0.948 15 C -0.132 4.132 16 C -0.492 4.492 17 H 0.086 0.914 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.871 3.129 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.026 0.974 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 20.004 6.371 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 N -0.125 5.125 4 N -0.160 5.160 5 C -0.039 4.039 6 C -0.025 4.025 7 C -0.154 4.154 8 C -0.263 4.263 9 C 0.076 3.924 10 N -0.398 5.398 11 C 0.306 3.694 12 O -0.407 6.407 13 C -0.027 4.027 14 H 0.070 0.930 15 C -0.190 4.190 16 C -0.530 4.530 17 H 0.104 0.896 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.698 3.302 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.226 0.774 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.491 20.623 6.958 23.362 hybrid contribution 0.998 -0.218 -1.038 1.456 sum 9.489 20.405 5.920 23.269 Atomic orbital electron populations 1.20232 0.86511 1.03667 1.03087 1.22255 0.96926 0.90058 0.98053 1.77321 0.86089 1.22466 1.26587 1.48311 1.05596 1.04094 1.57965 1.21801 0.83974 0.94932 1.03154 1.20936 0.97046 0.84448 1.00106 1.20522 0.92600 0.98518 1.03756 1.19814 0.91279 0.96235 1.18932 1.19280 1.00525 0.87648 0.84932 1.46476 1.71544 1.14579 1.07232 1.21716 0.74555 0.79665 0.93457 1.90579 1.48753 1.54575 1.46774 1.19346 0.96775 0.97992 0.88593 0.93000 1.21929 0.99708 0.96393 1.00990 1.20762 1.28502 0.90709 1.13054 0.89620 1.25020 0.96151 0.94799 0.97095 1.69885 1.43236 1.05666 1.34679 0.86967 0.82743 0.79062 0.81428 1.20206 1.21342 1.18964 0.90443 0.90956 0.89833 0.90952 0.89577 0.89331 0.89828 0.91228 0.89102 0.91429 0.91777 0.77401 0.95543 0.92575 0.93222 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.12 36.01 0.36 -0.47 16 2 C 0.09 1.25 7.22 -82.40 -0.59 0.65 16 3 N -0.30 -4.16 12.58 33.67 0.42 -3.73 16 4 N -0.38 -4.34 4.01 -63.88 -0.26 -4.60 16 5 C 0.10 0.70 11.09 59.85 0.66 1.37 16 6 C 0.10 1.20 6.93 -82.26 -0.57 0.63 16 7 C -0.10 -0.84 9.68 36.00 0.35 -0.50 16 8 C -0.25 -3.35 5.47 -105.05 -0.57 -3.92 16 9 C 0.20 3.02 5.61 -5.19 -0.03 2.99 16 10 N -0.74 -12.57 5.45 -61.47 -0.34 -12.90 16 11 C 0.52 11.46 7.15 -10.99 -0.08 11.38 16 12 O -0.53 -13.93 15.77 5.55 0.09 -13.85 16 13 C -0.01 -0.12 2.30 -92.92 -0.21 -0.34 16 14 H 0.05 1.18 5.28 -51.93 -0.27 0.91 16 15 C -0.13 -2.66 9.03 37.16 0.34 -2.33 16 16 C -0.49 -14.21 8.36 -34.44 -0.29 -14.50 16 17 H 0.09 2.81 7.61 -52.48 -0.40 2.41 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 20 Si 0.87 21.02 26.99 -169.99 -4.59 16.44 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.26 -5.92 6.81 56.52 0.39 -5.53 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.40 7.67 -51.93 -0.40 0.01 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.45 7.74 -51.92 -0.40 0.05 16 32 H 0.09 0.85 7.14 -51.93 -0.37 0.48 16 33 H 0.07 1.06 7.92 -51.93 -0.41 0.64 16 34 H 0.06 0.98 7.14 -51.93 -0.37 0.61 16 35 H 0.39 5.92 7.98 -40.82 -0.33 5.60 16 36 H 0.03 0.43 7.71 -51.93 -0.40 0.03 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -35.58 327.63 -5.57 -41.14 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.87 Total: 2.63 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.73 Total: -3.08 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.61 Total: -48.22 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.59 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.58 -5.57 -41.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597317109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.508 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds