Wall clock time and date at job start Mon Mar 30 2020 04:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30844 * 125.89786 * 2 1 4 4 N 1.40086 * 108.20441 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03756 * 180.02562 * 4 3 2 6 6 C 1.34954 * 107.92535 * 359.76089 * 4 3 2 7 7 C 1.50697 * 126.12673 * 180.23323 * 6 4 3 8 8 C 1.35315 * 107.74355 * 0.38885 * 6 4 3 9 9 C 1.50699 * 126.03507 * 179.87727 * 8 6 4 10 10 N 1.46503 * 109.46803 * 269.70988 * 9 8 6 11 11 C 1.34775 * 119.99820 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00430 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00047 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.47478 * 59.99861 * 13 11 10 15 15 C 1.53001 * 109.47259 * 299.99675 * 13 11 10 16 16 C 1.50703 * 109.47552 * 179.97438 * 13 11 10 17 17 H 1.08004 * 119.99320 * 35.05044 * 16 13 11 18 18 C 1.37870 * 120.00499 * 215.32879 * 16 13 11 19 19 N 1.31516 * 120.00485 * 184.55831 * 18 16 13 20 20 Si 1.86800 * 119.99940 * 4.55473 * 18 16 13 21 21 H 1.48504 * 109.46963 * 85.12118 * 20 18 16 22 22 H 1.48497 * 109.47280 * 205.12160 * 20 18 16 23 23 H 1.48498 * 109.47302 * 325.12244 * 20 18 16 24 24 H 1.08992 * 109.46897 * 270.02206 * 1 2 3 25 25 H 1.08997 * 109.46914 * 30.02511 * 1 2 3 26 26 H 1.08998 * 109.46794 * 150.01961 * 1 2 3 27 27 H 1.09000 * 109.47010 * 89.97667 * 5 4 3 28 28 H 1.09003 * 109.46900 * 209.97965 * 5 4 3 29 29 H 1.09004 * 109.46784 * 329.97299 * 5 4 3 30 30 H 1.08997 * 109.47386 * 270.18025 * 7 6 4 31 31 H 1.09009 * 109.46869 * 30.18535 * 7 6 4 32 32 H 1.09000 * 109.47145 * 150.17688 * 7 6 4 33 33 H 1.09000 * 109.46961 * 149.71593 * 9 8 6 34 34 H 1.08994 * 109.47856 * 29.71067 * 9 8 6 35 35 H 0.97004 * 120.00239 * 0.02562 * 10 9 8 36 36 H 1.09002 * 109.47159 * 65.13455 * 15 13 11 37 37 H 1.09000 * 109.47373 * 185.13201 * 15 13 11 38 38 H 1.09000 * 109.47220 * 305.13268 * 15 13 11 39 39 H 0.97000 * 120.00593 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6142 -0.7154 0.0063 7 6 4.8350 -1.5989 0.0139 8 6 2.3272 -1.1330 0.0005 9 6 1.8600 -2.5657 0.0012 10 7 1.7092 -3.0308 -1.3799 11 6 1.2981 -4.2906 -1.6256 12 8 1.0533 -5.0394 -0.7035 13 6 1.1435 -4.7692 -3.0462 14 1 2.1028 -4.7005 -3.5592 15 6 0.1149 -3.8971 -3.7691 16 6 0.6762 -6.2019 -3.0456 17 1 -0.0026 -6.5481 -2.2802 18 6 1.1196 -7.0721 -4.0187 19 7 0.6436 -8.2969 -4.0721 20 14 2.3965 -6.5114 -5.2615 21 1 3.7554 -6.6879 -4.6890 22 1 2.2718 -7.3220 -6.4995 23 1 2.1776 -5.0785 -5.5840 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 5.0821 1.7159 1.0292 28 1 5.6097 0.9981 -0.5119 29 1 4.5567 2.4332 -0.5129 30 1 5.1345 -1.8136 -1.0119 31 1 5.6486 -1.0900 0.5311 32 1 4.6050 -2.5320 0.5282 33 1 0.9010 -2.6349 0.5146 34 1 2.5932 -3.1868 0.5156 35 1 1.9053 -2.4320 -2.1175 36 1 0.4947 -2.8786 -3.8499 37 1 -0.0644 -4.2981 -4.7667 38 1 -0.8182 -3.8933 -3.2058 39 1 0.9559 -8.9093 -4.7566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597317109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:58 Heat of formation + Delta-G solvation = -1.008329 kcal Electronic energy + Delta-G solvation = -20160.051817 eV Core-core repulsion = 17102.908643 eV Total energy + Delta-G solvation = -3057.143174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.43070 -40.41781 -36.11693 -35.56750 -34.93857 -33.50018 -32.63491 -30.45058 -29.09696 -27.20825 -26.92372 -25.46392 -23.76745 -21.03574 -20.64174 -20.43599 -19.07574 -17.91123 -17.14160 -17.00413 -16.50047 -16.05729 -15.80378 -15.20394 -14.84675 -14.58217 -14.37040 -14.29457 -14.09533 -13.98313 -13.80387 -13.49217 -13.22704 -13.00172 -12.92277 -12.88127 -12.80726 -12.67656 -12.58280 -12.08059 -11.73822 -11.50432 -11.19347 -10.71762 -10.48105 -10.02706 -9.87982 -9.36749 -8.23343 -6.29404 0.80270 1.38302 1.40941 1.51486 1.52310 1.59159 1.98992 2.38844 2.70565 3.15239 3.50372 3.67034 4.04488 4.13038 4.27706 4.36300 4.38629 4.41115 4.45695 4.59117 4.61830 4.68998 4.77193 4.78634 4.80865 4.92276 4.99895 5.06600 5.11956 5.18417 5.24193 5.54081 5.62806 5.64567 5.69294 6.09448 6.30877 6.70791 6.73071 6.93257 7.32154 7.61109 8.94799 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.004740 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.163681 B = 5905.649136 C = 6271.030339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.085 3.915 3 N -0.329 5.329 4 N -0.376 5.376 5 C 0.091 3.909 6 C 0.112 3.888 7 C -0.096 4.096 8 C -0.275 4.275 9 C 0.208 3.792 10 N -0.717 5.717 11 C 0.520 3.480 12 O -0.585 6.585 13 C -0.009 4.009 14 H 0.070 0.930 15 C -0.126 4.126 16 C -0.505 4.505 17 H 0.022 0.978 18 C 0.005 3.995 19 N -0.953 5.953 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.226 1.226 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.407 0.593 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.137 23.122 5.195 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 N -0.152 5.152 4 N -0.157 5.157 5 C -0.048 4.048 6 C -0.018 4.018 7 C -0.154 4.154 8 C -0.287 4.287 9 C 0.084 3.916 10 N -0.370 5.370 11 C 0.308 3.692 12 O -0.464 6.464 13 C -0.031 4.031 14 H 0.088 0.912 15 C -0.184 4.184 16 C -0.543 4.543 17 H 0.041 0.959 18 C -0.191 4.191 19 N -0.593 5.593 20 Si 0.768 3.232 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.148 1.148 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.145 23.842 5.783 26.946 hybrid contribution 0.175 -1.141 -0.547 1.277 sum 11.320 22.701 5.236 25.902 Atomic orbital electron populations 1.20262 0.85651 1.03734 1.03735 1.22526 0.97767 0.89998 0.97852 1.77274 0.87344 1.22949 1.27623 1.48685 1.05892 1.04517 1.56610 1.22208 0.83025 0.94909 1.04701 1.21319 0.97389 0.84982 0.98085 1.20639 0.92206 0.97887 1.04665 1.19638 0.92347 0.94928 1.21756 1.19210 1.00104 0.89005 0.83277 1.46171 1.69226 1.12768 1.08865 1.21431 0.74506 0.80874 0.92406 1.90568 1.51430 1.56473 1.47912 1.19329 0.98247 0.95323 0.90176 0.91204 1.21809 0.98431 0.98171 0.99962 1.20898 1.27750 0.94127 1.11518 0.95926 1.26066 0.98700 0.94556 0.99754 1.70078 1.45437 1.07591 1.36225 0.85762 0.78983 0.80663 0.77755 1.19241 1.21238 1.14822 0.89563 0.90050 0.90483 0.89419 0.86925 0.88826 0.88840 0.88362 0.89870 0.92395 0.92057 0.75751 0.90892 0.92858 0.94161 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 10.12 71.24 0.72 -0.85 16 2 C 0.08 2.12 7.22 43.10 0.31 2.43 16 3 N -0.33 -8.39 12.58 -47.38 -0.60 -8.98 16 4 N -0.38 -7.53 4.01 -356.02 -1.43 -8.96 16 5 C 0.09 0.91 11.09 127.77 1.42 2.33 16 6 C 0.11 2.32 6.93 41.40 0.29 2.60 16 7 C -0.10 -1.36 9.68 71.24 0.69 -0.67 16 8 C -0.28 -6.86 5.47 -20.14 -0.11 -6.97 16 9 C 0.21 6.09 5.61 85.63 0.48 6.58 16 10 N -0.72 -23.09 5.45 -466.79 -2.55 -25.63 16 11 C 0.52 22.91 7.15 87.66 0.63 23.54 16 12 O -0.58 -31.74 15.77 -3.04 -0.05 -31.79 16 13 C -0.01 -0.41 2.30 -12.29 -0.03 -0.44 16 14 H 0.07 2.95 5.28 -2.38 -0.01 2.94 16 15 C -0.13 -4.79 9.03 71.98 0.65 -4.14 16 16 C -0.50 -30.13 8.36 25.60 0.21 -29.91 16 17 H 0.02 1.58 7.61 -2.91 -0.02 1.56 16 18 C 0.01 0.32 5.47 84.65 0.46 0.78 16 19 N -0.95 -61.29 13.96 21.44 0.30 -60.99 16 20 Si 0.95 42.46 26.99 68.60 1.85 44.31 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.23 -8.66 6.81 99.48 0.68 -7.98 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 1.68 7.92 -2.39 -0.02 1.66 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 0.54 7.67 -2.39 -0.02 0.52 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 0.84 7.74 -2.38 -0.02 0.82 16 32 H 0.08 1.36 7.14 -2.39 -0.02 1.34 16 33 H 0.06 1.82 7.92 -2.39 -0.02 1.80 16 34 H 0.06 1.85 7.14 -2.39 -0.02 1.83 16 35 H 0.41 10.97 7.98 -92.71 -0.74 10.23 16 36 H 0.07 2.10 7.71 -2.39 -0.02 2.08 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -81.99 327.63 3.54 -78.45 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.28 Total: 18.31 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.72 Total: -4.73 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.27 Total: -104.56 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.05 Total: -31.79 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.85 Total: 44.31 kcal Total: -81.99 3.54 -78.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597317109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.446 kcal (2) G-P(sol) polarization free energy of solvation -81.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds