Wall clock time and date at job start Mon Mar 30 2020 04:32:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.30828 * 125.90056 * 2 1
4 4 N 1.40086 * 108.20840 * 179.97438 * 3 2 1
5 5 C 1.46506 * 126.03978 * 180.02562 * 4 3 2
6 6 C 1.34955 * 107.92424 * 359.75899 * 4 3 2
7 7 C 1.50692 * 126.12792 * 180.23919 * 6 4 3
8 8 C 1.35315 * 107.74118 * 0.39022 * 6 4 3
9 9 C 1.50696 * 126.03850 * 179.87536 * 8 6 4
10 10 N 1.46495 * 109.47263 * 269.71648 * 9 8 6
11 11 C 1.34779 * 120.00252 * 180.02562 * 10 9 8
12 12 O 1.21283 * 119.99876 * 359.97438 * 11 10 9
13 13 C 1.50705 * 120.00080 * 179.97438 * 11 10 9
14 14 H 1.09002 * 109.46518 * 299.99682 * 13 11 10
15 15 C 1.52992 * 109.47195 * 59.99556 * 13 11 10
16 16 C 1.50696 * 109.47092 * 179.97438 * 13 11 10
17 17 H 1.08001 * 120.00204 * 356.65833 * 16 13 11
18 18 C 1.37878 * 120.00026 * 176.65504 * 16 13 11
19 19 N 1.31516 * 119.99766 * 352.45037 * 18 16 13
20 20 Si 1.86800 * 119.99913 * 172.71825 * 18 16 13
21 21 H 1.48506 * 109.46865 * 264.79148 * 20 18 16
22 22 H 1.48494 * 109.47308 * 24.78976 * 20 18 16
23 23 H 1.48502 * 109.47204 * 144.79640 * 20 18 16
24 24 H 1.08999 * 109.47178 * 270.02128 * 1 2 3
25 25 H 1.09001 * 109.47139 * 30.02171 * 1 2 3
26 26 H 1.09006 * 109.47210 * 150.02413 * 1 2 3
27 27 H 1.08999 * 109.47090 * 89.97791 * 5 4 3
28 28 H 1.09003 * 109.47087 * 209.97293 * 5 4 3
29 29 H 1.08998 * 109.46706 * 329.97506 * 5 4 3
30 30 H 1.08994 * 109.47245 * 270.17787 * 7 6 4
31 31 H 1.09002 * 109.47499 * 30.17956 * 7 6 4
32 32 H 1.09002 * 109.47247 * 150.17559 * 7 6 4
33 33 H 1.08995 * 109.47691 * 149.71076 * 9 8 6
34 34 H 1.09006 * 109.47476 * 29.71348 * 9 8 6
35 35 H 0.97002 * 119.99914 * 359.97438 * 10 9 8
36 36 H 1.09008 * 109.47434 * 177.36303 * 15 13 11
37 37 H 1.09005 * 109.47634 * 297.36319 * 15 13 11
38 38 H 1.08997 * 109.47353 * 57.36584 * 15 13 11
39 39 H 0.97000 * 119.99451 * 180.27574 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2741 1.0598 0.0000
4 7 3.6087 0.6340 0.0006
5 6 4.7900 1.5007 0.0013
6 6 3.6142 -0.7155 0.0064
7 6 4.8349 -1.5990 0.0141
8 6 2.3271 -1.1331 0.0005
9 6 1.8598 -2.5658 0.0012
10 7 1.7091 -3.0309 -1.3797
11 6 1.2979 -4.2907 -1.6254
12 8 1.0530 -5.0394 -0.7032
13 6 1.1423 -4.7690 -3.0461
14 1 0.4091 -4.1476 -3.5603
15 6 2.4882 -4.6723 -3.7671
16 6 0.6751 -6.2017 -3.0454
17 1 0.5594 -6.7316 -2.1115
18 6 0.3953 -6.8361 -4.2371
19 7 0.3917 -6.1528 -5.3608
20 14 0.0139 -8.6647 -4.2547
21 1 1.2534 -9.4260 -4.5542
22 1 -0.5096 -9.0740 -2.9268
23 1 -1.0049 -8.9479 -5.2973
24 1 -0.3633 0.0004 1.0276
25 1 -0.3633 0.8898 -0.5142
26 1 -0.3634 -0.8902 -0.5135
27 1 5.0821 1.7158 1.0292
28 1 5.6098 0.9980 -0.5118
29 1 4.5567 2.4331 -0.5129
30 1 5.1345 -1.8138 -1.0116
31 1 5.6485 -1.0902 0.5312
32 1 4.6049 -2.5321 0.5284
33 1 0.9009 -2.6350 0.5146
34 1 2.5930 -3.1869 0.5158
35 1 1.9046 -2.4320 -2.1173
36 1 2.3866 -5.0619 -4.7801
37 1 2.8041 -3.6298 -3.8087
38 1 3.2329 -5.2562 -3.2263
39 1 0.1909 -6.5984 -6.1987
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597317110.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:32:01
Heat of formation + Delta-G solvation = 22.335240 kcal
Electronic energy + Delta-G solvation = -20092.216864 eV
Core-core repulsion = 17036.085943 eV
Total energy + Delta-G solvation = -3056.130921 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.46068 -38.58122 -34.80030 -33.89181 -33.61403 -31.92513 -30.44421 -29.60590
-27.93323 -25.99515 -25.05236 -24.32531 -22.15293 -19.74899 -19.55477 -19.18713
-16.67691 -16.20219 -15.87993 -15.73041 -14.85409 -14.58702 -14.30274 -13.91649
-13.60947 -13.56839 -13.31968 -13.01627 -12.75803 -12.70567 -12.49437 -12.09802
-12.04654 -11.98489 -11.68275 -11.45897 -10.95987 -10.78429 -10.60191 -10.48148
-10.21124 -9.90149 -9.10636 -8.94237 -8.75750 -8.34944 -8.27452 -8.12962
-5.99833 -3.99111 1.74555 2.38260 2.60158 3.37081 3.43392 3.50950
3.85505 4.25907 4.35115 4.51090 4.55660 4.83691 4.89318 5.00756
5.14057 5.25442 5.31744 5.35393 5.35877 5.56060 5.64828 5.69755
5.92293 5.98865 6.07410 6.27744 6.39755 6.62760 6.65821 6.85734
6.93175 6.95249 7.22688 7.52878 7.68058 7.73988 8.03907 8.21444
8.57257 9.10397 9.36410 9.65453 11.10287
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.032368 B = 0.004183 C = 0.004051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.849901 B = 6691.622501 C = 6910.834252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.094 3.906
3 N -0.303 5.303
4 N -0.378 5.378
5 C 0.103 3.897
6 C 0.103 3.897
7 C -0.095 4.095
8 C -0.251 4.251
9 C 0.201 3.799
10 N -0.741 5.741
11 C 0.519 3.481
12 O -0.549 6.549
13 C 0.027 3.973
14 H 0.056 0.944
15 C -0.126 4.126
16 C -0.500 4.500
17 H 0.074 0.926
18 C 0.059 3.941
19 N -0.896 5.896
20 Si 0.896 3.104
21 H -0.282 1.282
22 H -0.272 1.272
23 H -0.288 1.288
24 H 0.076 0.924
25 H 0.072 0.928
26 H 0.083 0.917
27 H 0.071 0.929
28 H 0.086 0.914
29 H 0.088 0.912
30 H 0.084 0.916
31 H 0.068 0.932
32 H 0.089 0.911
33 H 0.066 0.934
34 H 0.062 0.938
35 H 0.395 0.605
36 H 0.079 0.921
37 H 0.014 0.986
38 H 0.031 0.969
39 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.845 14.961 8.849 19.503
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.073 4.073
3 N -0.125 5.125
4 N -0.160 5.160
5 C -0.038 4.038
6 C -0.025 4.025
7 C -0.153 4.153
8 C -0.262 4.262
9 C 0.076 3.924
10 N -0.396 5.396
11 C 0.308 3.692
12 O -0.425 6.425
13 C 0.006 3.994
14 H 0.074 0.926
15 C -0.184 4.184
16 C -0.538 4.538
17 H 0.092 0.908
18 C -0.142 4.142
19 N -0.536 5.536
20 Si 0.724 3.276
21 H -0.208 1.208
22 H -0.197 1.197
23 H -0.214 1.214
24 H 0.095 0.905
25 H 0.091 0.909
26 H 0.102 0.898
27 H 0.090 0.910
28 H 0.104 0.896
29 H 0.107 0.893
30 H 0.102 0.898
31 H 0.087 0.913
32 H 0.108 0.892
33 H 0.084 0.916
34 H 0.081 0.919
35 H 0.228 0.772
36 H 0.097 0.903
37 H 0.033 0.967
38 H 0.050 0.950
39 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 8.804 15.754 9.345 20.323
hybrid contribution 0.057 -1.307 -0.468 1.389
sum 8.861 14.447 8.877 19.132
Atomic orbital electron populations
1.20235 0.86526 1.03726 1.03023 1.22251 0.96926 0.90072 0.98043
1.77310 0.86091 1.22470 1.26599 1.48306 1.05586 1.04092 1.58015
1.21796 0.83994 0.94948 1.03099 1.20924 0.97034 0.84439 1.00119
1.20511 0.92566 0.98446 1.03795 1.19816 0.91289 0.96245 1.18866
1.19260 1.00354 0.87632 0.85107 1.46424 1.71349 1.14659 1.07122
1.21919 0.73758 0.79633 0.93881 1.90526 1.49817 1.54895 1.47275
1.18865 0.95789 0.98444 0.86284 0.92642 1.21658 0.96700 0.96847
1.03198 1.21150 1.43697 0.95452 0.93503 0.90758 1.24949 0.95317
0.98383 0.95542 1.69952 1.49851 1.35506 0.98255 0.86499 0.77914
0.85380 0.77812 1.20787 1.19662 1.21390 0.90493 0.90934 0.89813
0.91003 0.89573 0.89334 0.89758 0.91289 0.89187 0.91572 0.91935
0.77201 0.90267 0.96660 0.94959 0.93071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.89 10.12 36.00 0.36 -0.52 16
2 C 0.09 1.31 7.22 -82.41 -0.59 0.71 16
3 N -0.30 -4.32 12.57 33.67 0.42 -3.89 16
4 N -0.38 -4.52 4.01 -63.88 -0.26 -4.78 16
5 C 0.10 0.74 11.09 59.85 0.66 1.41 16
6 C 0.10 1.26 6.93 -82.26 -0.57 0.69 16
7 C -0.09 -0.87 9.68 36.00 0.35 -0.52 16
8 C -0.25 -3.49 5.47 -105.05 -0.57 -4.06 16
9 C 0.20 3.14 5.61 -5.20 -0.03 3.11 16
10 N -0.74 -13.20 5.45 -61.47 -0.34 -13.53 16
11 C 0.52 11.87 7.15 -10.98 -0.08 11.79 16
12 O -0.55 -14.37 15.46 5.56 0.09 -14.28 16
13 C 0.03 0.68 2.53 -92.93 -0.23 0.45 16
14 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16
15 C -0.13 -2.87 8.91 37.15 0.33 -2.54 16
16 C -0.50 -14.29 8.32 -34.44 -0.29 -14.57 16
17 H 0.07 2.25 6.77 -52.49 -0.36 1.89 16
18 C 0.06 1.65 5.20 -17.82 -0.09 1.56 16
19 N -0.90 -25.53 11.92 55.43 0.66 -24.87 16
20 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16
21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16
23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
24 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16
25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
26 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16
27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
28 H 0.09 0.44 7.67 -51.93 -0.40 0.04 16
29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16
30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.07 0.46 7.74 -51.93 -0.40 0.06 16
32 H 0.09 0.87 7.14 -51.93 -0.37 0.50 16
33 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16
34 H 0.06 0.98 7.14 -51.93 -0.37 0.61 16
35 H 0.39 6.48 7.93 -40.82 -0.32 6.16 16
36 H 0.08 1.98 6.59 -51.92 -0.34 1.64 16
37 H 0.01 0.28 7.64 -51.93 -0.40 -0.12 16
38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16
39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
LS Contribution 328.26 15.07 4.95 4.95
Total: -1.00 -33.80 328.26 -6.13 -39.93
By element:
Atomic # 1 Polarization: 7.92 SS G_CDS: -5.88 Total: 2.05 kcal
Atomic # 6 Polarization: -1.75 SS G_CDS: -0.75 Total: -2.50 kcal
Atomic # 7 Polarization: -47.56 SS G_CDS: 0.49 Total: -47.07 kcal
Atomic # 8 Polarization: -14.37 SS G_CDS: 0.09 Total: -14.28 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -33.80 -6.13 -39.93 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597317110.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.263 kcal
(2) G-P(sol) polarization free energy of solvation -33.802 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.335 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds