Wall clock time and date at job start Mon Mar 30 2020 04:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30828 * 125.90056 * 2 1 4 4 N 1.40086 * 108.20840 * 179.97438 * 3 2 1 5 5 C 1.46506 * 126.03978 * 180.02562 * 4 3 2 6 6 C 1.34955 * 107.92424 * 359.75899 * 4 3 2 7 7 C 1.50692 * 126.12792 * 180.23919 * 6 4 3 8 8 C 1.35315 * 107.74118 * 0.39022 * 6 4 3 9 9 C 1.50696 * 126.03850 * 179.87536 * 8 6 4 10 10 N 1.46495 * 109.47263 * 269.71648 * 9 8 6 11 11 C 1.34779 * 120.00252 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99876 * 359.97438 * 11 10 9 13 13 C 1.50705 * 120.00080 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46518 * 299.99682 * 13 11 10 15 15 C 1.52992 * 109.47195 * 59.99556 * 13 11 10 16 16 C 1.50696 * 109.47092 * 179.97438 * 13 11 10 17 17 H 1.08001 * 120.00204 * 356.65833 * 16 13 11 18 18 C 1.37878 * 120.00026 * 176.65504 * 16 13 11 19 19 N 1.31516 * 119.99766 * 352.45037 * 18 16 13 20 20 Si 1.86800 * 119.99913 * 172.71825 * 18 16 13 21 21 H 1.48506 * 109.46865 * 264.79148 * 20 18 16 22 22 H 1.48494 * 109.47308 * 24.78976 * 20 18 16 23 23 H 1.48502 * 109.47204 * 144.79640 * 20 18 16 24 24 H 1.08999 * 109.47178 * 270.02128 * 1 2 3 25 25 H 1.09001 * 109.47139 * 30.02171 * 1 2 3 26 26 H 1.09006 * 109.47210 * 150.02413 * 1 2 3 27 27 H 1.08999 * 109.47090 * 89.97791 * 5 4 3 28 28 H 1.09003 * 109.47087 * 209.97293 * 5 4 3 29 29 H 1.08998 * 109.46706 * 329.97506 * 5 4 3 30 30 H 1.08994 * 109.47245 * 270.17787 * 7 6 4 31 31 H 1.09002 * 109.47499 * 30.17956 * 7 6 4 32 32 H 1.09002 * 109.47247 * 150.17559 * 7 6 4 33 33 H 1.08995 * 109.47691 * 149.71076 * 9 8 6 34 34 H 1.09006 * 109.47476 * 29.71348 * 9 8 6 35 35 H 0.97002 * 119.99914 * 359.97438 * 10 9 8 36 36 H 1.09008 * 109.47434 * 177.36303 * 15 13 11 37 37 H 1.09005 * 109.47634 * 297.36319 * 15 13 11 38 38 H 1.08997 * 109.47353 * 57.36584 * 15 13 11 39 39 H 0.97000 * 119.99451 * 180.27574 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7900 1.5007 0.0013 6 6 3.6142 -0.7155 0.0064 7 6 4.8349 -1.5990 0.0141 8 6 2.3271 -1.1331 0.0005 9 6 1.8598 -2.5658 0.0012 10 7 1.7091 -3.0309 -1.3797 11 6 1.2979 -4.2907 -1.6254 12 8 1.0530 -5.0394 -0.7032 13 6 1.1423 -4.7690 -3.0461 14 1 0.4091 -4.1476 -3.5603 15 6 2.4882 -4.6723 -3.7671 16 6 0.6751 -6.2017 -3.0454 17 1 0.5594 -6.7316 -2.1115 18 6 0.3953 -6.8361 -4.2371 19 7 0.3917 -6.1528 -5.3608 20 14 0.0139 -8.6647 -4.2547 21 1 1.2534 -9.4260 -4.5542 22 1 -0.5096 -9.0740 -2.9268 23 1 -1.0049 -8.9479 -5.2973 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 5.0821 1.7158 1.0292 28 1 5.6098 0.9980 -0.5118 29 1 4.5567 2.4331 -0.5129 30 1 5.1345 -1.8138 -1.0116 31 1 5.6485 -1.0902 0.5312 32 1 4.6049 -2.5321 0.5284 33 1 0.9009 -2.6350 0.5146 34 1 2.5930 -3.1869 0.5158 35 1 1.9046 -2.4320 -2.1173 36 1 2.3866 -5.0619 -4.7801 37 1 2.8041 -3.6298 -3.8087 38 1 3.2329 -5.2562 -3.2263 39 1 0.1909 -6.5984 -6.1987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597317110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:01 Heat of formation + Delta-G solvation = 22.335240 kcal Electronic energy + Delta-G solvation = -20092.216864 eV Core-core repulsion = 17036.085943 eV Total energy + Delta-G solvation = -3056.130921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.46068 -38.58122 -34.80030 -33.89181 -33.61403 -31.92513 -30.44421 -29.60590 -27.93323 -25.99515 -25.05236 -24.32531 -22.15293 -19.74899 -19.55477 -19.18713 -16.67691 -16.20219 -15.87993 -15.73041 -14.85409 -14.58702 -14.30274 -13.91649 -13.60947 -13.56839 -13.31968 -13.01627 -12.75803 -12.70567 -12.49437 -12.09802 -12.04654 -11.98489 -11.68275 -11.45897 -10.95987 -10.78429 -10.60191 -10.48148 -10.21124 -9.90149 -9.10636 -8.94237 -8.75750 -8.34944 -8.27452 -8.12962 -5.99833 -3.99111 1.74555 2.38260 2.60158 3.37081 3.43392 3.50950 3.85505 4.25907 4.35115 4.51090 4.55660 4.83691 4.89318 5.00756 5.14057 5.25442 5.31744 5.35393 5.35877 5.56060 5.64828 5.69755 5.92293 5.98865 6.07410 6.27744 6.39755 6.62760 6.65821 6.85734 6.93175 6.95249 7.22688 7.52878 7.68058 7.73988 8.03907 8.21444 8.57257 9.10397 9.36410 9.65453 11.10287 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032368 B = 0.004183 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.849901 B = 6691.622501 C = 6910.834252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.094 3.906 3 N -0.303 5.303 4 N -0.378 5.378 5 C 0.103 3.897 6 C 0.103 3.897 7 C -0.095 4.095 8 C -0.251 4.251 9 C 0.201 3.799 10 N -0.741 5.741 11 C 0.519 3.481 12 O -0.549 6.549 13 C 0.027 3.973 14 H 0.056 0.944 15 C -0.126 4.126 16 C -0.500 4.500 17 H 0.074 0.926 18 C 0.059 3.941 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.282 1.282 22 H -0.272 1.272 23 H -0.288 1.288 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.079 0.921 37 H 0.014 0.986 38 H 0.031 0.969 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.845 14.961 8.849 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 N -0.125 5.125 4 N -0.160 5.160 5 C -0.038 4.038 6 C -0.025 4.025 7 C -0.153 4.153 8 C -0.262 4.262 9 C 0.076 3.924 10 N -0.396 5.396 11 C 0.308 3.692 12 O -0.425 6.425 13 C 0.006 3.994 14 H 0.074 0.926 15 C -0.184 4.184 16 C -0.538 4.538 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.536 5.536 20 Si 0.724 3.276 21 H -0.208 1.208 22 H -0.197 1.197 23 H -0.214 1.214 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.097 0.903 37 H 0.033 0.967 38 H 0.050 0.950 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.804 15.754 9.345 20.323 hybrid contribution 0.057 -1.307 -0.468 1.389 sum 8.861 14.447 8.877 19.132 Atomic orbital electron populations 1.20235 0.86526 1.03726 1.03023 1.22251 0.96926 0.90072 0.98043 1.77310 0.86091 1.22470 1.26599 1.48306 1.05586 1.04092 1.58015 1.21796 0.83994 0.94948 1.03099 1.20924 0.97034 0.84439 1.00119 1.20511 0.92566 0.98446 1.03795 1.19816 0.91289 0.96245 1.18866 1.19260 1.00354 0.87632 0.85107 1.46424 1.71349 1.14659 1.07122 1.21919 0.73758 0.79633 0.93881 1.90526 1.49817 1.54895 1.47275 1.18865 0.95789 0.98444 0.86284 0.92642 1.21658 0.96700 0.96847 1.03198 1.21150 1.43697 0.95452 0.93503 0.90758 1.24949 0.95317 0.98383 0.95542 1.69952 1.49851 1.35506 0.98255 0.86499 0.77914 0.85380 0.77812 1.20787 1.19662 1.21390 0.90493 0.90934 0.89813 0.91003 0.89573 0.89334 0.89758 0.91289 0.89187 0.91572 0.91935 0.77201 0.90267 0.96660 0.94959 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.12 36.00 0.36 -0.52 16 2 C 0.09 1.31 7.22 -82.41 -0.59 0.71 16 3 N -0.30 -4.32 12.57 33.67 0.42 -3.89 16 4 N -0.38 -4.52 4.01 -63.88 -0.26 -4.78 16 5 C 0.10 0.74 11.09 59.85 0.66 1.41 16 6 C 0.10 1.26 6.93 -82.26 -0.57 0.69 16 7 C -0.09 -0.87 9.68 36.00 0.35 -0.52 16 8 C -0.25 -3.49 5.47 -105.05 -0.57 -4.06 16 9 C 0.20 3.14 5.61 -5.20 -0.03 3.11 16 10 N -0.74 -13.20 5.45 -61.47 -0.34 -13.53 16 11 C 0.52 11.87 7.15 -10.98 -0.08 11.79 16 12 O -0.55 -14.37 15.46 5.56 0.09 -14.28 16 13 C 0.03 0.68 2.53 -92.93 -0.23 0.45 16 14 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 15 C -0.13 -2.87 8.91 37.15 0.33 -2.54 16 16 C -0.50 -14.29 8.32 -34.44 -0.29 -14.57 16 17 H 0.07 2.25 6.77 -52.49 -0.36 1.89 16 18 C 0.06 1.65 5.20 -17.82 -0.09 1.56 16 19 N -0.90 -25.53 11.92 55.43 0.66 -24.87 16 20 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.44 7.67 -51.93 -0.40 0.04 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.46 7.74 -51.93 -0.40 0.06 16 32 H 0.09 0.87 7.14 -51.93 -0.37 0.50 16 33 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 34 H 0.06 0.98 7.14 -51.93 -0.37 0.61 16 35 H 0.39 6.48 7.93 -40.82 -0.32 6.16 16 36 H 0.08 1.98 6.59 -51.92 -0.34 1.64 16 37 H 0.01 0.28 7.64 -51.93 -0.40 -0.12 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -33.80 328.26 -6.13 -39.93 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.88 Total: 2.05 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.75 Total: -2.50 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.49 Total: -47.07 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.09 Total: -14.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.80 -6.13 -39.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597317110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.263 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds