Wall clock time and date at job start Mon Mar 30 2020 04:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30828 * 125.90056 * 2 1 4 4 N 1.40086 * 108.20840 * 179.97438 * 3 2 1 5 5 C 1.46506 * 126.03978 * 180.02562 * 4 3 2 6 6 C 1.34955 * 107.92424 * 359.75899 * 4 3 2 7 7 C 1.50692 * 126.12792 * 180.23919 * 6 4 3 8 8 C 1.35315 * 107.74118 * 0.39022 * 6 4 3 9 9 C 1.50696 * 126.03850 * 179.87536 * 8 6 4 10 10 N 1.46495 * 109.47263 * 269.71648 * 9 8 6 11 11 C 1.34779 * 120.00252 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99876 * 359.97438 * 11 10 9 13 13 C 1.50705 * 120.00080 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46518 * 299.99682 * 13 11 10 15 15 C 1.52992 * 109.47195 * 59.99556 * 13 11 10 16 16 C 1.50696 * 109.47092 * 179.97438 * 13 11 10 17 17 H 1.08001 * 120.00204 * 356.65833 * 16 13 11 18 18 C 1.37878 * 120.00026 * 176.65504 * 16 13 11 19 19 N 1.31516 * 119.99766 * 352.45037 * 18 16 13 20 20 Si 1.86800 * 119.99913 * 172.71825 * 18 16 13 21 21 H 1.48506 * 109.46865 * 264.79148 * 20 18 16 22 22 H 1.48494 * 109.47308 * 24.78976 * 20 18 16 23 23 H 1.48502 * 109.47204 * 144.79640 * 20 18 16 24 24 H 1.08999 * 109.47178 * 270.02128 * 1 2 3 25 25 H 1.09001 * 109.47139 * 30.02171 * 1 2 3 26 26 H 1.09006 * 109.47210 * 150.02413 * 1 2 3 27 27 H 1.08999 * 109.47090 * 89.97791 * 5 4 3 28 28 H 1.09003 * 109.47087 * 209.97293 * 5 4 3 29 29 H 1.08998 * 109.46706 * 329.97506 * 5 4 3 30 30 H 1.08994 * 109.47245 * 270.17787 * 7 6 4 31 31 H 1.09002 * 109.47499 * 30.17956 * 7 6 4 32 32 H 1.09002 * 109.47247 * 150.17559 * 7 6 4 33 33 H 1.08995 * 109.47691 * 149.71076 * 9 8 6 34 34 H 1.09006 * 109.47476 * 29.71348 * 9 8 6 35 35 H 0.97002 * 119.99914 * 359.97438 * 10 9 8 36 36 H 1.09008 * 109.47434 * 177.36303 * 15 13 11 37 37 H 1.09005 * 109.47634 * 297.36319 * 15 13 11 38 38 H 1.08997 * 109.47353 * 57.36584 * 15 13 11 39 39 H 0.97000 * 119.99451 * 180.27574 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7900 1.5007 0.0013 6 6 3.6142 -0.7155 0.0064 7 6 4.8349 -1.5990 0.0141 8 6 2.3271 -1.1331 0.0005 9 6 1.8598 -2.5658 0.0012 10 7 1.7091 -3.0309 -1.3797 11 6 1.2979 -4.2907 -1.6254 12 8 1.0530 -5.0394 -0.7032 13 6 1.1423 -4.7690 -3.0461 14 1 0.4091 -4.1476 -3.5603 15 6 2.4882 -4.6723 -3.7671 16 6 0.6751 -6.2017 -3.0454 17 1 0.5594 -6.7316 -2.1115 18 6 0.3953 -6.8361 -4.2371 19 7 0.3917 -6.1528 -5.3608 20 14 0.0139 -8.6647 -4.2547 21 1 1.2534 -9.4260 -4.5542 22 1 -0.5096 -9.0740 -2.9268 23 1 -1.0049 -8.9479 -5.2973 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 5.0821 1.7158 1.0292 28 1 5.6098 0.9980 -0.5118 29 1 4.5567 2.4331 -0.5129 30 1 5.1345 -1.8138 -1.0116 31 1 5.6485 -1.0902 0.5312 32 1 4.6049 -2.5321 0.5284 33 1 0.9009 -2.6350 0.5146 34 1 2.5930 -3.1869 0.5158 35 1 1.9046 -2.4320 -2.1173 36 1 2.3866 -5.0619 -4.7801 37 1 2.8041 -3.6298 -3.8087 38 1 3.2329 -5.2562 -3.2263 39 1 0.1909 -6.5984 -6.1987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597317110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:00 Heat of formation + Delta-G solvation = -0.737441 kcal Electronic energy + Delta-G solvation = -20093.217371 eV Core-core repulsion = 17036.085943 eV Total energy + Delta-G solvation = -3057.131428 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42832 -40.36427 -36.11864 -35.66002 -34.93531 -33.18382 -32.24201 -30.45138 -29.03444 -27.14577 -26.91246 -25.44935 -23.92047 -21.07193 -20.69178 -20.43915 -18.33217 -17.91244 -17.13017 -16.94647 -16.45809 -16.07339 -16.03680 -15.00763 -14.74526 -14.57759 -14.45184 -14.33283 -13.97809 -13.84158 -13.64252 -13.44331 -13.13764 -12.92047 -12.90213 -12.81489 -12.72263 -12.67436 -12.52887 -12.17290 -11.97134 -11.50667 -11.02099 -10.54356 -10.36143 -10.02629 -9.85835 -9.35902 -8.14458 -6.20755 0.80532 1.42637 1.43593 1.51548 1.56729 1.59473 2.02377 2.44819 2.81405 3.17680 3.50204 3.67447 4.04857 4.14324 4.30684 4.36342 4.41393 4.45653 4.60161 4.62715 4.69357 4.75911 4.77840 4.83986 4.97434 4.98713 5.04154 5.07084 5.11769 5.23994 5.53562 5.64323 5.68673 5.77855 5.91671 6.10037 6.23412 6.70605 6.81213 6.93665 7.44265 7.62581 8.94437 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032368 B = 0.004183 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.849901 B = 6691.622501 C = 6910.834252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.083 3.917 3 N -0.329 5.329 4 N -0.376 5.376 5 C 0.091 3.909 6 C 0.113 3.887 7 C -0.095 4.095 8 C -0.276 4.276 9 C 0.209 3.791 10 N -0.718 5.718 11 C 0.523 3.477 12 O -0.588 6.588 13 C 0.022 3.978 14 H 0.039 0.961 15 C -0.112 4.112 16 C -0.526 4.526 17 H 0.050 0.950 18 C 0.020 3.980 19 N -0.914 5.914 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.404 0.596 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.031 0.969 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 15.842 8.969 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 N -0.152 5.152 4 N -0.157 5.157 5 C -0.048 4.048 6 C -0.017 4.017 7 C -0.153 4.153 8 C -0.288 4.288 9 C 0.085 3.915 10 N -0.371 5.371 11 C 0.312 3.688 12 O -0.468 6.468 13 C 0.001 3.999 14 H 0.057 0.943 15 C -0.170 4.170 16 C -0.565 4.565 17 H 0.068 0.932 18 C -0.179 4.179 19 N -0.553 5.553 20 Si 0.778 3.222 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.239 0.761 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.470 16.705 9.453 21.864 hybrid contribution -0.395 -1.465 -0.482 1.592 sum 10.075 15.240 8.971 20.353 Atomic orbital electron populations 1.20257 0.85735 1.03590 1.03785 1.22525 0.97765 0.90098 0.97929 1.77257 0.87386 1.22929 1.27636 1.48692 1.05875 1.04549 1.56619 1.22213 0.82995 0.94881 1.04751 1.21331 0.97399 0.84982 0.98016 1.20631 0.92135 0.97898 1.04613 1.19667 0.92401 0.95011 1.21724 1.19215 1.00089 0.88992 0.83185 1.46176 1.69196 1.12887 1.08795 1.21459 0.73986 0.80883 0.92512 1.90505 1.51964 1.56413 1.47876 1.18806 0.96465 0.96626 0.88009 0.94289 1.21467 0.95338 0.99031 1.01184 1.21292 1.44982 0.97378 0.92824 0.93211 1.25591 0.95015 1.02136 0.95150 1.70023 1.49844 1.36848 0.98577 0.85624 0.78200 0.80800 0.77535 1.19718 1.20329 1.20315 0.89309 0.90147 0.90761 0.89282 0.86931 0.88886 0.88995 0.88271 0.89733 0.92412 0.91818 0.76101 0.92632 0.92990 0.95009 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.12 71.24 0.72 -1.00 16 2 C 0.08 2.24 7.22 43.10 0.31 2.55 16 3 N -0.33 -8.95 12.57 -47.39 -0.60 -9.54 16 4 N -0.38 -8.09 4.01 -356.02 -1.43 -9.52 16 5 C 0.09 1.02 11.09 127.77 1.42 2.44 16 6 C 0.11 2.49 6.93 41.40 0.29 2.78 16 7 C -0.09 -1.45 9.68 71.23 0.69 -0.76 16 8 C -0.28 -7.37 5.47 -20.14 -0.11 -7.49 16 9 C 0.21 6.43 5.61 85.63 0.48 6.91 16 10 N -0.72 -25.17 5.45 -466.79 -2.54 -27.71 16 11 C 0.52 24.12 7.15 87.66 0.63 24.75 16 12 O -0.59 -31.41 15.46 -3.04 -0.05 -31.46 16 13 C 0.02 1.13 2.53 -12.29 -0.03 1.09 16 14 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 15 C -0.11 -5.03 8.91 71.98 0.64 -4.39 16 16 C -0.53 -30.71 8.32 25.60 0.21 -30.49 16 17 H 0.05 3.10 6.77 -2.91 -0.02 3.08 16 18 C 0.02 1.14 5.20 84.65 0.44 1.58 16 19 N -0.91 -52.09 11.92 21.45 0.26 -51.84 16 20 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.81 7.92 -2.38 -0.02 1.79 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 0.67 7.67 -2.39 -0.02 0.65 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 0.92 7.74 -2.39 -0.02 0.90 16 32 H 0.08 1.43 7.14 -2.39 -0.02 1.41 16 33 H 0.06 1.88 7.92 -2.39 -0.02 1.87 16 34 H 0.06 1.96 7.14 -2.38 -0.02 1.95 16 35 H 0.40 12.76 7.93 -92.71 -0.73 12.03 16 36 H 0.05 2.76 6.59 -2.38 -0.02 2.74 16 37 H 0.05 1.89 7.64 -2.38 -0.02 1.88 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -73.27 328.26 3.67 -69.60 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.32 Total: 15.30 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.69 Total: -2.02 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.31 Total: -98.60 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.05 Total: -31.46 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.27 3.67 -69.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597317110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.863 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds