Wall clock time and date at job start Mon Mar 30 2020 04:32:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.30828 * 125.90056 * 2 1
4 4 N 1.40086 * 108.20840 * 179.97438 * 3 2 1
5 5 C 1.46506 * 126.03978 * 180.02562 * 4 3 2
6 6 C 1.34955 * 107.92424 * 359.75899 * 4 3 2
7 7 C 1.50692 * 126.12792 * 180.23919 * 6 4 3
8 8 C 1.35315 * 107.74118 * 0.39022 * 6 4 3
9 9 C 1.50696 * 126.03850 * 179.87536 * 8 6 4
10 10 N 1.46495 * 109.47263 * 269.71648 * 9 8 6
11 11 C 1.34779 * 120.00252 * 180.02562 * 10 9 8
12 12 O 1.21283 * 119.99876 * 359.97438 * 11 10 9
13 13 C 1.50705 * 120.00080 * 179.97438 * 11 10 9
14 14 H 1.09002 * 109.46518 * 299.99682 * 13 11 10
15 15 C 1.52992 * 109.47195 * 59.99556 * 13 11 10
16 16 C 1.50696 * 109.47092 * 179.97438 * 13 11 10
17 17 H 1.08001 * 120.00204 * 356.65833 * 16 13 11
18 18 C 1.37878 * 120.00026 * 176.65504 * 16 13 11
19 19 N 1.31516 * 119.99766 * 352.45037 * 18 16 13
20 20 Si 1.86800 * 119.99913 * 172.71825 * 18 16 13
21 21 H 1.48506 * 109.46865 * 264.79148 * 20 18 16
22 22 H 1.48494 * 109.47308 * 24.78976 * 20 18 16
23 23 H 1.48502 * 109.47204 * 144.79640 * 20 18 16
24 24 H 1.08999 * 109.47178 * 270.02128 * 1 2 3
25 25 H 1.09001 * 109.47139 * 30.02171 * 1 2 3
26 26 H 1.09006 * 109.47210 * 150.02413 * 1 2 3
27 27 H 1.08999 * 109.47090 * 89.97791 * 5 4 3
28 28 H 1.09003 * 109.47087 * 209.97293 * 5 4 3
29 29 H 1.08998 * 109.46706 * 329.97506 * 5 4 3
30 30 H 1.08994 * 109.47245 * 270.17787 * 7 6 4
31 31 H 1.09002 * 109.47499 * 30.17956 * 7 6 4
32 32 H 1.09002 * 109.47247 * 150.17559 * 7 6 4
33 33 H 1.08995 * 109.47691 * 149.71076 * 9 8 6
34 34 H 1.09006 * 109.47476 * 29.71348 * 9 8 6
35 35 H 0.97002 * 119.99914 * 359.97438 * 10 9 8
36 36 H 1.09008 * 109.47434 * 177.36303 * 15 13 11
37 37 H 1.09005 * 109.47634 * 297.36319 * 15 13 11
38 38 H 1.08997 * 109.47353 * 57.36584 * 15 13 11
39 39 H 0.97000 * 119.99451 * 180.27574 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2741 1.0598 0.0000
4 7 3.6087 0.6340 0.0006
5 6 4.7900 1.5007 0.0013
6 6 3.6142 -0.7155 0.0064
7 6 4.8349 -1.5990 0.0141
8 6 2.3271 -1.1331 0.0005
9 6 1.8598 -2.5658 0.0012
10 7 1.7091 -3.0309 -1.3797
11 6 1.2979 -4.2907 -1.6254
12 8 1.0530 -5.0394 -0.7032
13 6 1.1423 -4.7690 -3.0461
14 1 0.4091 -4.1476 -3.5603
15 6 2.4882 -4.6723 -3.7671
16 6 0.6751 -6.2017 -3.0454
17 1 0.5594 -6.7316 -2.1115
18 6 0.3953 -6.8361 -4.2371
19 7 0.3917 -6.1528 -5.3608
20 14 0.0139 -8.6647 -4.2547
21 1 1.2534 -9.4260 -4.5542
22 1 -0.5096 -9.0740 -2.9268
23 1 -1.0049 -8.9479 -5.2973
24 1 -0.3633 0.0004 1.0276
25 1 -0.3633 0.8898 -0.5142
26 1 -0.3634 -0.8902 -0.5135
27 1 5.0821 1.7158 1.0292
28 1 5.6098 0.9980 -0.5118
29 1 4.5567 2.4331 -0.5129
30 1 5.1345 -1.8138 -1.0116
31 1 5.6485 -1.0902 0.5312
32 1 4.6049 -2.5321 0.5284
33 1 0.9009 -2.6350 0.5146
34 1 2.5930 -3.1869 0.5158
35 1 1.9046 -2.4320 -2.1173
36 1 2.3866 -5.0619 -4.7801
37 1 2.8041 -3.6298 -3.8087
38 1 3.2329 -5.2562 -3.2263
39 1 0.1909 -6.5984 -6.1987
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597317110.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:32:00
Heat of formation + Delta-G solvation = -0.737441 kcal
Electronic energy + Delta-G solvation = -20093.217371 eV
Core-core repulsion = 17036.085943 eV
Total energy + Delta-G solvation = -3057.131428 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-42.42832 -40.36427 -36.11864 -35.66002 -34.93531 -33.18382 -32.24201 -30.45138
-29.03444 -27.14577 -26.91246 -25.44935 -23.92047 -21.07193 -20.69178 -20.43915
-18.33217 -17.91244 -17.13017 -16.94647 -16.45809 -16.07339 -16.03680 -15.00763
-14.74526 -14.57759 -14.45184 -14.33283 -13.97809 -13.84158 -13.64252 -13.44331
-13.13764 -12.92047 -12.90213 -12.81489 -12.72263 -12.67436 -12.52887 -12.17290
-11.97134 -11.50667 -11.02099 -10.54356 -10.36143 -10.02629 -9.85835 -9.35902
-8.14458 -6.20755 0.80532 1.42637 1.43593 1.51548 1.56729 1.59473
2.02377 2.44819 2.81405 3.17680 3.50204 3.67447 4.04857 4.14324
4.30684 4.36342 4.41393 4.45653 4.60161 4.62715 4.69357 4.75911
4.77840 4.83986 4.97434 4.98713 5.04154 5.07084 5.11769 5.23994
5.53562 5.64323 5.68673 5.77855 5.91671 6.10037 6.23412 6.70605
6.81213 6.93665 7.44265 7.62581 8.94437
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.032368 B = 0.004183 C = 0.004051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.849901 B = 6691.622501 C = 6910.834252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.083 3.917
3 N -0.329 5.329
4 N -0.376 5.376
5 C 0.091 3.909
6 C 0.113 3.887
7 C -0.095 4.095
8 C -0.276 4.276
9 C 0.209 3.791
10 N -0.718 5.718
11 C 0.523 3.477
12 O -0.588 6.588
13 C 0.022 3.978
14 H 0.039 0.961
15 C -0.112 4.112
16 C -0.526 4.526
17 H 0.050 0.950
18 C 0.020 3.980
19 N -0.914 5.914
20 Si 0.953 3.047
21 H -0.272 1.272
22 H -0.278 1.278
23 H -0.278 1.278
24 H 0.088 0.912
25 H 0.080 0.920
26 H 0.074 0.926
27 H 0.089 0.911
28 H 0.112 0.888
29 H 0.092 0.908
30 H 0.092 0.908
31 H 0.099 0.901
32 H 0.084 0.916
33 H 0.058 0.942
34 H 0.064 0.936
35 H 0.404 0.596
36 H 0.055 0.945
37 H 0.051 0.949
38 H 0.031 0.969
39 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.486 15.842 8.969 21.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.083 4.083
3 N -0.152 5.152
4 N -0.157 5.157
5 C -0.048 4.048
6 C -0.017 4.017
7 C -0.153 4.153
8 C -0.288 4.288
9 C 0.085 3.915
10 N -0.371 5.371
11 C 0.312 3.688
12 O -0.468 6.468
13 C 0.001 3.999
14 H 0.057 0.943
15 C -0.170 4.170
16 C -0.565 4.565
17 H 0.068 0.932
18 C -0.179 4.179
19 N -0.553 5.553
20 Si 0.778 3.222
21 H -0.197 1.197
22 H -0.203 1.203
23 H -0.203 1.203
24 H 0.107 0.893
25 H 0.099 0.901
26 H 0.092 0.908
27 H 0.107 0.893
28 H 0.131 0.869
29 H 0.111 0.889
30 H 0.110 0.890
31 H 0.117 0.883
32 H 0.103 0.897
33 H 0.076 0.924
34 H 0.082 0.918
35 H 0.239 0.761
36 H 0.074 0.926
37 H 0.070 0.930
38 H 0.050 0.950
39 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 10.470 16.705 9.453 21.864
hybrid contribution -0.395 -1.465 -0.482 1.592
sum 10.075 15.240 8.971 20.353
Atomic orbital electron populations
1.20257 0.85735 1.03590 1.03785 1.22525 0.97765 0.90098 0.97929
1.77257 0.87386 1.22929 1.27636 1.48692 1.05875 1.04549 1.56619
1.22213 0.82995 0.94881 1.04751 1.21331 0.97399 0.84982 0.98016
1.20631 0.92135 0.97898 1.04613 1.19667 0.92401 0.95011 1.21724
1.19215 1.00089 0.88992 0.83185 1.46176 1.69196 1.12887 1.08795
1.21459 0.73986 0.80883 0.92512 1.90505 1.51964 1.56413 1.47876
1.18806 0.96465 0.96626 0.88009 0.94289 1.21467 0.95338 0.99031
1.01184 1.21292 1.44982 0.97378 0.92824 0.93211 1.25591 0.95015
1.02136 0.95150 1.70023 1.49844 1.36848 0.98577 0.85624 0.78200
0.80800 0.77535 1.19718 1.20329 1.20315 0.89309 0.90147 0.90761
0.89282 0.86931 0.88886 0.88995 0.88271 0.89733 0.92412 0.91818
0.76101 0.92632 0.92990 0.95009 0.92705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.72 10.12 71.24 0.72 -1.00 16
2 C 0.08 2.24 7.22 43.10 0.31 2.55 16
3 N -0.33 -8.95 12.57 -47.39 -0.60 -9.54 16
4 N -0.38 -8.09 4.01 -356.02 -1.43 -9.52 16
5 C 0.09 1.02 11.09 127.77 1.42 2.44 16
6 C 0.11 2.49 6.93 41.40 0.29 2.78 16
7 C -0.09 -1.45 9.68 71.23 0.69 -0.76 16
8 C -0.28 -7.37 5.47 -20.14 -0.11 -7.49 16
9 C 0.21 6.43 5.61 85.63 0.48 6.91 16
10 N -0.72 -25.17 5.45 -466.79 -2.54 -27.71 16
11 C 0.52 24.12 7.15 87.66 0.63 24.75 16
12 O -0.59 -31.41 15.46 -3.04 -0.05 -31.46 16
13 C 0.02 1.13 2.53 -12.29 -0.03 1.09 16
14 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16
15 C -0.11 -5.03 8.91 71.98 0.64 -4.39 16
16 C -0.53 -30.71 8.32 25.60 0.21 -30.49 16
17 H 0.05 3.10 6.77 -2.91 -0.02 3.08 16
18 C 0.02 1.14 5.20 84.65 0.44 1.58 16
19 N -0.91 -52.09 11.92 21.45 0.26 -51.84 16
20 Si 0.95 45.17 29.54 68.60 2.03 47.19 16
21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16
23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
24 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16
25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
26 H 0.07 1.81 7.92 -2.38 -0.02 1.79 16
27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
28 H 0.11 0.67 7.67 -2.39 -0.02 0.65 16
29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
31 H 0.10 0.92 7.74 -2.39 -0.02 0.90 16
32 H 0.08 1.43 7.14 -2.39 -0.02 1.41 16
33 H 0.06 1.88 7.92 -2.39 -0.02 1.87 16
34 H 0.06 1.96 7.14 -2.38 -0.02 1.95 16
35 H 0.40 12.76 7.93 -92.71 -0.73 12.03 16
36 H 0.05 2.76 6.59 -2.38 -0.02 2.74 16
37 H 0.05 1.89 7.64 -2.38 -0.02 1.88 16
38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16
39 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16
Total: -1.00 -73.27 328.26 3.67 -69.60
By element:
Atomic # 1 Polarization: 14.98 SS G_CDS: 0.32 Total: 15.30 kcal
Atomic # 6 Polarization: -7.71 SS G_CDS: 5.69 Total: -2.02 kcal
Atomic # 7 Polarization: -94.29 SS G_CDS: -4.31 Total: -98.60 kcal
Atomic # 8 Polarization: -31.41 SS G_CDS: -0.05 Total: -31.46 kcal
Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal
Total: -73.27 3.67 -69.60 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597317110.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.863 kcal
(2) G-P(sol) polarization free energy of solvation -73.270 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds