Wall clock time and date at job start Mon Mar 30 2020 04:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35312 * 126.12705 * 2 1 4 4 C 1.39875 * 107.91805 * 180.14618 * 3 2 1 5 5 C 1.50702 * 125.89739 * 179.86280 * 4 3 2 6 6 C 1.53005 * 109.46821 * 124.71331 * 5 4 3 7 7 H 1.09002 * 109.47355 * 304.99980 * 6 5 4 8 8 C 1.53000 * 109.46934 * 184.99949 * 6 5 4 9 9 N 1.46500 * 109.47006 * 65.00167 * 6 5 4 10 10 C 1.34780 * 120.00188 * 204.99948 * 9 6 5 11 11 O 1.21285 * 119.99712 * 359.97438 * 10 9 6 12 12 C 1.50699 * 120.00249 * 179.97438 * 10 9 6 13 13 H 1.09002 * 109.46959 * 59.99905 * 12 10 9 14 14 C 1.52997 * 109.47078 * 299.99993 * 12 10 9 15 15 C 1.50697 * 109.46956 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 10 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46872 * 59.99743 * 19 17 15 21 21 H 1.48503 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46914 * 299.99916 * 19 17 15 23 23 N 1.30836 * 108.20340 * 359.59635 * 4 3 2 24 24 N 1.34947 * 126.12543 * 179.70586 * 2 1 3 25 25 H 0.97000 * 126.03823 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47346 * 270.26790 * 1 2 3 27 27 H 1.09005 * 109.47176 * 30.26658 * 1 2 3 28 28 H 1.09000 * 109.47447 * 150.26878 * 1 2 3 29 29 H 1.08001 * 126.04204 * 0.02598 * 3 2 1 30 30 H 1.09003 * 109.47043 * 4.71930 * 5 4 3 31 31 H 1.08992 * 109.47169 * 244.70982 * 5 4 3 32 32 H 1.09001 * 109.47284 * 60.00556 * 8 6 5 33 33 H 1.09006 * 109.47079 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47125 * 300.00172 * 8 6 5 35 35 H 0.96998 * 119.99994 * 24.99525 * 9 6 5 36 36 H 1.09002 * 109.47153 * 299.99793 * 14 12 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 38 38 H 1.09004 * 109.47261 * 59.99965 * 14 12 10 39 39 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 -0.0034 5 6 4.8543 1.5394 -0.0075 6 6 5.7524 1.1738 1.1761 7 1 5.1772 1.2316 2.1001 8 6 6.9279 2.1507 1.2451 9 7 6.2599 -0.1894 1.0012 10 6 6.6309 -0.9134 2.0757 11 8 6.5450 -0.4363 3.1875 12 6 7.1523 -2.3158 1.8959 13 1 8.0458 -2.2940 1.2718 14 6 6.0810 -3.1759 1.2226 15 6 7.4944 -2.9010 3.2418 16 1 7.3484 -2.3160 4.1378 17 6 7.9939 -4.1831 3.3292 18 7 8.1712 -4.8956 2.2382 19 14 8.4173 -4.9088 4.9977 20 1 7.1999 -4.9391 5.8476 21 1 8.9313 -6.2907 4.8204 22 1 9.4566 -4.0736 5.6513 23 7 3.6334 -0.6525 0.0034 24 7 2.3026 -1.0900 0.0056 25 1 2.0055 -2.0134 0.0107 26 1 -0.3634 0.0048 1.0276 27 1 -0.3634 0.8876 -0.5180 28 1 -0.3634 -0.8924 -0.5096 29 1 1.9741 2.1211 0.0004 30 1 4.5484 2.5822 0.0771 31 1 5.4034 1.3961 -0.9380 32 1 6.5503 3.1649 1.3753 33 1 7.5680 1.8899 2.0881 34 1 7.5031 2.0929 0.3211 35 1 6.3288 -0.5708 0.1120 36 1 5.1875 -3.1978 1.8467 37 1 6.4584 -4.1901 1.0922 38 1 5.8339 -2.7525 0.2490 39 1 8.5229 -5.7975 2.2997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597404151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:50 Heat of formation + Delta-G solvation = 15.173807 kcal Electronic energy + Delta-G solvation = -20373.167150 eV Core-core repulsion = 17316.725686 eV Total energy + Delta-G solvation = -3056.441464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16945 -38.74793 -35.71658 -33.56207 -32.65939 -31.55663 -30.74669 -29.41224 -27.23295 -26.81691 -24.98162 -22.96798 -21.11243 -20.43371 -19.58151 -19.10961 -17.26935 -16.18469 -15.79086 -15.47007 -14.85825 -14.34597 -14.22386 -13.87613 -13.64150 -13.21165 -13.16151 -12.95571 -12.67895 -12.55660 -12.22213 -12.05316 -11.83860 -11.41765 -11.27587 -10.89620 -10.79184 -10.60632 -10.53428 -10.32387 -10.07395 -9.84837 -9.14921 -8.83180 -8.54495 -8.43166 -8.17486 -8.14335 -5.91923 -3.94172 1.96039 2.83826 2.95481 3.42046 3.43707 3.49912 3.97685 4.15199 4.53997 4.57226 4.73664 4.92414 5.07135 5.25071 5.32540 5.40599 5.46530 5.58225 5.72110 5.76280 5.81489 5.86286 5.97002 6.14356 6.25208 6.49451 6.60468 6.72808 6.85449 7.07814 7.13658 7.35725 7.40720 7.65948 7.83799 7.91196 8.13085 8.34073 8.68772 9.14370 9.49821 9.70903 11.15517 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.005266 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.365185 B = 5315.865789 C = 6111.372093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.077 3.923 3 C -0.272 4.272 4 C 0.073 3.927 5 C -0.046 4.046 6 C 0.146 3.854 7 H 0.081 0.919 8 C -0.161 4.161 9 N -0.729 5.729 10 C 0.524 3.476 11 O -0.555 6.555 12 C 0.029 3.971 13 H 0.048 0.952 14 C -0.123 4.123 15 C -0.496 4.496 16 H 0.072 0.928 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 N -0.259 5.259 24 N -0.475 5.475 25 H 0.436 0.564 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.396 0.604 36 H 0.025 0.975 37 H 0.086 0.914 38 H 0.017 0.983 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.064 11.669 -9.253 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C -0.301 4.301 4 C -0.094 4.094 5 C -0.086 4.086 6 C 0.040 3.960 7 H 0.099 0.901 8 C -0.220 4.220 9 N -0.383 5.383 10 C 0.314 3.686 11 O -0.432 6.432 12 C 0.008 3.992 13 H 0.066 0.934 14 C -0.182 4.182 15 C -0.535 4.535 16 H 0.090 0.910 17 C -0.143 4.143 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.202 1.202 23 N -0.082 5.082 24 N -0.183 5.183 25 H 0.280 0.720 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.230 0.770 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.036 0.964 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.345 10.795 -8.480 18.462 hybrid contribution -0.502 -0.409 0.432 0.779 sum -12.848 10.386 -8.048 18.377 Atomic orbital electron populations 1.20426 0.87632 1.03608 1.03301 1.21067 0.94428 0.88030 1.01606 1.21092 0.91764 0.98866 1.18391 1.22214 0.95325 0.91935 0.99924 1.20396 0.91226 0.97342 0.99598 1.20692 0.93825 0.83586 0.97885 0.90098 1.22178 0.98876 0.98382 1.02523 1.46192 1.67741 1.14010 1.10334 1.21818 0.74922 0.88654 0.83233 1.90501 1.54545 1.72812 1.25347 1.18828 0.95410 0.86121 0.98798 0.93400 1.21630 0.97321 1.03317 0.95885 1.21135 1.41228 0.98693 0.92439 0.91030 1.24940 0.95729 0.96952 0.96684 1.69877 1.46301 1.10497 1.27099 0.86552 0.78793 0.77701 0.84319 1.20361 1.21461 1.20242 1.77532 0.95368 1.12200 1.23066 1.46403 1.04327 1.08173 1.59413 0.72013 0.90294 0.89802 0.91257 0.83942 0.88961 0.89866 0.92344 0.91727 0.92651 0.77020 0.95561 0.89494 0.96408 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.43 36.01 0.38 -0.25 16 2 C 0.08 0.87 7.21 -82.26 -0.59 0.28 16 3 C -0.27 -3.30 10.64 -40.01 -0.43 -3.73 16 4 C 0.07 1.04 6.47 -82.40 -0.53 0.51 16 5 C -0.05 -0.56 5.34 -27.88 -0.15 -0.70 16 6 C 0.15 2.29 2.56 -67.93 -0.17 2.12 16 7 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 8 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 9 N -0.73 -13.70 4.00 -53.80 -0.22 -13.92 16 10 C 0.52 12.69 7.11 -10.98 -0.08 12.61 16 11 O -0.56 -15.26 15.12 5.55 0.08 -15.18 16 12 C 0.03 0.78 2.64 -92.93 -0.24 0.53 16 13 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 14 C -0.12 -3.04 8.87 37.16 0.33 -2.71 16 15 C -0.50 -14.74 8.37 -34.44 -0.29 -15.03 16 16 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.90 -26.14 11.32 55.43 0.63 -25.51 16 19 Si 0.90 22.61 29.54 -169.99 -5.02 17.59 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 N -0.26 -4.17 11.73 33.67 0.40 -3.77 16 24 N -0.47 -6.22 7.36 33.48 0.25 -5.97 16 25 H 0.44 4.69 8.96 -182.61 -1.64 3.06 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 6.91 7.93 -40.82 -0.32 6.59 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 38 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -34.94 327.44 -7.67 -42.62 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.20 Total: 5.91 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.52 Total: -6.69 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 1.05 Total: -49.17 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.08 Total: -15.18 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.94 -7.67 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.791 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds