Wall clock time and date at job start Mon Mar 30 2020 04:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35312 * 126.12705 * 2 1 4 4 C 1.39875 * 107.91805 * 180.14618 * 3 2 1 5 5 C 1.50702 * 125.89739 * 179.86280 * 4 3 2 6 6 C 1.53005 * 109.46821 * 124.71331 * 5 4 3 7 7 H 1.09002 * 109.47355 * 304.99980 * 6 5 4 8 8 C 1.53000 * 109.46934 * 184.99949 * 6 5 4 9 9 N 1.46500 * 109.47006 * 65.00167 * 6 5 4 10 10 C 1.34780 * 120.00188 * 204.99948 * 9 6 5 11 11 O 1.21285 * 119.99712 * 359.97438 * 10 9 6 12 12 C 1.50699 * 120.00249 * 179.97438 * 10 9 6 13 13 H 1.09002 * 109.46959 * 59.99905 * 12 10 9 14 14 C 1.52997 * 109.47078 * 299.99993 * 12 10 9 15 15 C 1.50697 * 109.46956 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 10 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46872 * 59.99743 * 19 17 15 21 21 H 1.48503 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46914 * 299.99916 * 19 17 15 23 23 N 1.30836 * 108.20340 * 359.59635 * 4 3 2 24 24 N 1.34947 * 126.12543 * 179.70586 * 2 1 3 25 25 H 0.97000 * 126.03823 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47346 * 270.26790 * 1 2 3 27 27 H 1.09005 * 109.47176 * 30.26658 * 1 2 3 28 28 H 1.09000 * 109.47447 * 150.26878 * 1 2 3 29 29 H 1.08001 * 126.04204 * 0.02598 * 3 2 1 30 30 H 1.09003 * 109.47043 * 4.71930 * 5 4 3 31 31 H 1.08992 * 109.47169 * 244.70982 * 5 4 3 32 32 H 1.09001 * 109.47284 * 60.00556 * 8 6 5 33 33 H 1.09006 * 109.47079 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47125 * 300.00172 * 8 6 5 35 35 H 0.96998 * 119.99994 * 24.99525 * 9 6 5 36 36 H 1.09002 * 109.47153 * 299.99793 * 14 12 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 38 38 H 1.09004 * 109.47261 * 59.99965 * 14 12 10 39 39 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 -0.0034 5 6 4.8543 1.5394 -0.0075 6 6 5.7524 1.1738 1.1761 7 1 5.1772 1.2316 2.1001 8 6 6.9279 2.1507 1.2451 9 7 6.2599 -0.1894 1.0012 10 6 6.6309 -0.9134 2.0757 11 8 6.5450 -0.4363 3.1875 12 6 7.1523 -2.3158 1.8959 13 1 8.0458 -2.2940 1.2718 14 6 6.0810 -3.1759 1.2226 15 6 7.4944 -2.9010 3.2418 16 1 7.3484 -2.3160 4.1378 17 6 7.9939 -4.1831 3.3292 18 7 8.1712 -4.8956 2.2382 19 14 8.4173 -4.9088 4.9977 20 1 7.1999 -4.9391 5.8476 21 1 8.9313 -6.2907 4.8204 22 1 9.4566 -4.0736 5.6513 23 7 3.6334 -0.6525 0.0034 24 7 2.3026 -1.0900 0.0056 25 1 2.0055 -2.0134 0.0107 26 1 -0.3634 0.0048 1.0276 27 1 -0.3634 0.8876 -0.5180 28 1 -0.3634 -0.8924 -0.5096 29 1 1.9741 2.1211 0.0004 30 1 4.5484 2.5822 0.0771 31 1 5.4034 1.3961 -0.9380 32 1 6.5503 3.1649 1.3753 33 1 7.5680 1.8899 2.0881 34 1 7.5031 2.0929 0.3211 35 1 6.3288 -0.5708 0.1120 36 1 5.1875 -3.1978 1.8467 37 1 6.4584 -4.1901 1.0922 38 1 5.8339 -2.7525 0.2490 39 1 8.5229 -5.7975 2.2997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597404151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:50 Heat of formation + Delta-G solvation = -9.321982 kcal Electronic energy + Delta-G solvation = -20374.229367 eV Core-core repulsion = 17316.725686 eV Total energy + Delta-G solvation = -3057.503682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11854 -40.53625 -37.16867 -35.71902 -33.78266 -32.93855 -32.15573 -31.02553 -28.13622 -27.70775 -27.18696 -24.81420 -22.53394 -21.38239 -20.98759 -20.56907 -18.31764 -18.19426 -17.63541 -17.07627 -16.36649 -15.80350 -15.70839 -15.12411 -14.87655 -14.60381 -14.51831 -14.06347 -13.94860 -13.53133 -13.43368 -13.28683 -13.15198 -12.95626 -12.88519 -12.64879 -12.56488 -12.41653 -12.20004 -12.00776 -11.93678 -11.33239 -11.03518 -10.58159 -10.21555 -10.16710 -9.79254 -9.44347 -8.14270 -6.24839 1.04574 1.38238 1.40711 1.49292 1.88245 2.05217 2.08311 2.39084 2.64876 3.14348 3.71318 3.81798 4.01866 4.24668 4.36946 4.42449 4.47975 4.67178 4.76353 4.76438 4.81548 4.89391 4.90668 4.96561 5.01889 5.05850 5.10797 5.18710 5.33497 5.38514 5.51798 5.71753 5.81441 5.84312 5.95820 6.23540 6.52042 6.78381 6.86178 6.95068 7.40975 7.67183 8.91428 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.005266 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.365185 B = 5315.865789 C = 6111.372093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.082 3.918 3 C -0.288 4.288 4 C 0.059 3.941 5 C -0.036 4.036 6 C 0.144 3.856 7 H 0.050 0.950 8 C -0.154 4.154 9 N -0.708 5.708 10 C 0.524 3.476 11 O -0.596 6.596 12 C 0.024 3.976 13 H 0.035 0.965 14 C -0.101 4.101 15 C -0.528 4.528 16 H 0.045 0.955 17 C 0.018 3.982 18 N -0.912 5.912 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.272 1.272 22 H -0.275 1.275 23 N -0.315 5.315 24 N -0.483 5.483 25 H 0.441 0.559 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.168 0.832 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.404 0.596 36 H 0.011 0.989 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 12.839 -10.359 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C -0.317 4.317 4 C -0.108 4.108 5 C -0.075 4.075 6 C 0.038 3.962 7 H 0.068 0.932 8 C -0.212 4.212 9 N -0.359 5.359 10 C 0.313 3.687 11 O -0.477 6.477 12 C 0.003 3.997 13 H 0.053 0.947 14 C -0.159 4.159 15 C -0.566 4.566 16 H 0.064 0.936 17 C -0.181 4.181 18 N -0.551 5.551 19 Si 0.782 3.218 20 H -0.204 1.204 21 H -0.197 1.197 22 H -0.201 1.201 23 N -0.138 5.138 24 N -0.192 5.192 25 H 0.286 0.714 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.185 0.815 30 H 0.147 0.853 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.240 0.760 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.559 11.980 -9.645 20.504 hybrid contribution -0.194 -0.747 0.722 1.056 sum -13.753 11.233 -8.923 19.874 Atomic orbital electron populations 1.20572 0.84516 1.05317 1.04233 1.21778 0.96291 0.87175 0.99410 1.21480 0.91052 1.00399 1.18721 1.22650 0.96894 0.91751 0.99462 1.20451 0.89951 0.98895 0.98229 1.20913 0.94916 0.81868 0.98460 0.93197 1.22115 0.97650 0.99540 1.01907 1.45966 1.65731 1.15084 1.09165 1.21368 0.75210 0.88303 0.83780 1.90473 1.56715 1.73452 1.27076 1.18771 0.95484 0.88091 0.97339 0.94682 1.21360 0.95856 1.01912 0.96782 1.21253 1.42919 0.99456 0.93001 0.93640 1.25621 0.95225 0.96970 1.00235 1.69958 1.45872 1.10738 1.28537 0.85647 0.78450 0.77571 0.80155 1.20360 1.19676 1.20053 1.77411 0.97380 1.13553 1.25462 1.46477 1.03956 1.09090 1.59667 0.71422 0.89571 0.87807 0.89864 0.81456 0.85293 0.88153 0.88829 0.95365 0.90748 0.76029 0.96967 0.91540 0.93584 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.43 71.24 0.74 -0.23 16 2 C 0.08 1.70 7.21 41.40 0.30 2.00 16 3 C -0.29 -6.35 10.64 21.99 0.23 -6.11 16 4 C 0.06 1.59 6.47 43.10 0.28 1.86 16 5 C -0.04 -0.78 5.34 29.85 0.16 -0.62 16 6 C 0.14 4.38 2.56 44.99 0.12 4.49 16 7 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 8 C -0.15 -4.00 9.48 71.98 0.68 -3.32 16 9 N -0.71 -26.69 4.00 -442.51 -1.77 -28.46 16 10 C 0.52 26.22 7.11 87.66 0.62 26.84 16 11 O -0.60 -34.24 15.12 -3.05 -0.05 -34.28 16 12 C 0.02 1.32 2.64 -12.29 -0.03 1.29 16 13 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 14 C -0.10 -5.07 8.87 71.98 0.64 -4.43 16 15 C -0.53 -32.42 8.37 25.60 0.21 -32.20 16 16 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 17 C 0.02 1.07 5.30 84.66 0.45 1.52 16 18 N -0.91 -53.44 11.32 21.45 0.24 -53.19 16 19 Si 0.96 46.79 29.54 68.60 2.03 48.82 16 20 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 23 N -0.31 -9.97 11.73 -47.38 -0.56 -10.53 16 24 N -0.48 -12.33 7.36 -48.00 -0.35 -12.68 16 25 H 0.44 9.41 8.96 -213.33 -1.91 7.50 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.13 1.86 8.12 -2.39 -0.02 1.84 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.40 13.92 7.93 -92.71 -0.74 13.18 16 36 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 38 H 0.05 1.98 7.57 -2.38 -0.02 1.97 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -78.48 327.44 2.36 -76.12 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -1.59 Total: 23.12 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.40 Total: -8.91 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -2.44 Total: -104.87 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.05 Total: -34.28 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -78.48 2.36 -76.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.795 kcal (2) G-P(sol) polarization free energy of solvation -78.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds