Wall clock time and date at job start Mon Mar 30 2020 04:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35311 * 126.12555 * 2 1 4 4 C 1.39870 * 107.91994 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.89732 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47212 * 124.99924 * 5 4 3 7 7 H 1.09008 * 109.47017 * 54.99761 * 6 5 4 8 8 C 1.52994 * 109.47404 * 174.99684 * 6 5 4 9 9 N 1.46504 * 109.47349 * 295.00023 * 6 5 4 10 10 C 1.34776 * 120.00219 * 154.99866 * 9 6 5 11 11 O 1.21274 * 120.00173 * 359.97438 * 10 9 6 12 12 C 1.50705 * 119.99786 * 180.02562 * 10 9 6 13 13 H 1.08995 * 109.47237 * 299.99994 * 12 10 9 14 14 C 1.52998 * 109.46920 * 60.00252 * 12 10 9 15 15 C 1.50699 * 109.47008 * 179.97438 * 12 10 9 16 16 H 1.08004 * 119.99705 * 0.02562 * 15 12 10 17 17 C 1.37874 * 120.00174 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99918 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 119.99827 * 359.97438 * 17 15 12 20 20 H 1.48508 * 109.46693 * 90.00218 * 19 17 15 21 21 H 1.48499 * 109.47146 * 209.99761 * 19 17 15 22 22 H 1.48492 * 109.47135 * 330.00262 * 19 17 15 23 23 N 1.30837 * 108.20220 * 0.26104 * 4 3 2 24 24 N 1.34950 * 126.12576 * 180.02562 * 2 1 3 25 25 H 0.96994 * 126.03486 * 359.95772 * 24 2 1 26 26 H 1.08997 * 109.47477 * 89.99861 * 1 2 3 27 27 H 1.09007 * 109.47220 * 209.99611 * 1 2 3 28 28 H 1.09004 * 109.47321 * 329.99141 * 1 2 3 29 29 H 1.08000 * 126.04262 * 0.06313 * 3 2 1 30 30 H 1.09002 * 109.47060 * 244.99979 * 5 4 3 31 31 H 1.09001 * 109.47380 * 5.00067 * 5 4 3 32 32 H 1.09000 * 109.47476 * 300.00087 * 8 6 5 33 33 H 1.09008 * 109.46970 * 60.00049 * 8 6 5 34 34 H 1.08996 * 109.47654 * 179.97438 * 8 6 5 35 35 H 0.97006 * 119.99491 * 334.99935 * 9 6 5 36 36 H 1.08999 * 109.47811 * 59.99626 * 14 12 10 37 37 H 1.09000 * 109.47081 * 180.02562 * 14 12 10 38 38 H 1.09005 * 109.46931 * 299.99265 * 14 12 10 39 39 H 0.97004 * 119.99593 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0929 0.0000 4 6 3.6334 0.6560 -0.0006 5 6 4.8542 1.5396 -0.0003 6 6 5.7527 1.1676 1.1809 7 1 5.9862 0.1036 1.1388 8 6 7.0489 1.9773 1.1106 9 7 5.0581 1.4658 2.4358 10 6 5.3836 0.7993 3.5611 11 8 6.2512 -0.0476 3.5348 12 6 4.6686 1.1058 4.8519 13 1 4.8219 2.1530 5.1124 14 6 3.1722 0.8361 4.6824 15 6 5.2153 0.2294 5.9493 16 1 6.0021 -0.4783 5.7336 17 6 4.7118 0.3319 7.2287 18 7 5.1892 -0.4326 8.1864 19 14 3.3524 1.5575 7.6020 20 1 2.0319 0.9085 7.4010 21 1 3.4704 2.0139 9.0102 22 1 3.4742 2.7243 6.6916 23 7 3.6333 -0.6524 -0.0066 24 7 2.3026 -1.0900 -0.0005 25 1 2.0055 -2.0133 -0.0003 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 1.9740 2.1211 0.0010 30 1 5.4030 1.4014 -0.9319 31 1 4.5483 2.5819 0.0901 32 1 7.5658 1.7554 0.1769 33 1 6.8154 3.0412 1.1526 34 1 7.6888 1.7126 1.9523 35 1 4.3638 2.1430 2.4568 36 1 3.0188 -0.2111 4.4218 37 1 2.6549 1.0582 5.6158 38 1 2.7764 1.4698 3.8886 39 1 4.8347 -0.3608 9.0865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597404153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:53 Heat of formation + Delta-G solvation = 23.427414 kcal Electronic energy + Delta-G solvation = -20455.543870 eV Core-core repulsion = 17399.460309 eV Total energy + Delta-G solvation = -3056.083561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25160 -38.98036 -35.86021 -33.72182 -32.81553 -31.66077 -31.17615 -29.94498 -27.26125 -26.93698 -25.06239 -23.32591 -21.29849 -20.45703 -19.64130 -19.28045 -17.37092 -16.67285 -15.94343 -15.57392 -15.02886 -14.51841 -14.38530 -13.89087 -13.79509 -13.38179 -13.35481 -13.07766 -12.77399 -12.65355 -12.45849 -12.26250 -12.12027 -11.97991 -11.53035 -11.38758 -10.97533 -10.83384 -10.51371 -10.35612 -10.23138 -9.58047 -9.25985 -9.02658 -8.60931 -8.56376 -8.51505 -8.37029 -5.99466 -3.98719 1.87429 2.77259 2.85942 3.26343 3.34293 3.39341 3.74429 3.93192 4.42631 4.48482 4.67964 4.87550 4.99807 5.21638 5.24825 5.30457 5.47322 5.55207 5.60221 5.70032 5.76519 5.79838 5.85748 5.95808 6.09575 6.19080 6.30827 6.42040 6.49931 6.54181 6.66399 6.80431 7.17448 7.24486 7.28384 7.62861 7.73241 8.28322 8.64164 9.19623 9.28980 9.60419 11.13717 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.006157 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.715994 B = 4546.500565 C = 5482.317848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.084 3.916 3 C -0.270 4.270 4 C 0.085 3.915 5 C -0.047 4.047 6 C 0.146 3.854 7 H 0.090 0.910 8 C -0.162 4.162 9 N -0.739 5.739 10 C 0.530 3.470 11 O -0.532 6.532 12 C -0.005 4.005 13 H 0.050 0.950 14 C -0.140 4.140 15 C -0.501 4.501 16 H 0.093 0.907 17 C 0.068 3.932 18 N -0.898 5.898 19 Si 0.885 3.115 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.267 1.267 23 N -0.281 5.281 24 N -0.475 5.475 25 H 0.436 0.564 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.392 0.608 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 6.266 -19.336 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C -0.299 4.299 4 C -0.082 4.082 5 C -0.086 4.086 6 C 0.040 3.960 7 H 0.108 0.892 8 C -0.221 4.221 9 N -0.393 5.393 10 C 0.318 3.682 11 O -0.406 6.406 12 C -0.027 4.027 13 H 0.068 0.932 14 C -0.197 4.197 15 C -0.540 4.540 16 H 0.111 0.889 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.192 1.192 23 N -0.104 5.104 24 N -0.184 5.184 25 H 0.279 0.721 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.162 0.838 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.225 0.775 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.177 4.541 -19.155 21.316 hybrid contribution -1.915 1.148 0.402 2.269 sum -10.092 5.688 -18.753 22.042 Atomic orbital electron populations 1.20447 0.87486 1.04086 1.03089 1.21081 0.94491 0.87917 1.01020 1.21105 0.91670 0.98989 1.18156 1.22141 0.95416 0.91694 0.98950 1.20393 0.91526 0.97300 0.99411 1.20777 0.90978 1.01202 0.83001 0.89158 1.22185 0.97652 0.99918 1.02320 1.46247 1.41531 1.42888 1.08615 1.21156 0.82511 0.79681 0.84861 1.90569 1.32108 1.32467 1.85505 1.19298 0.92291 0.99364 0.91747 0.93204 1.22060 0.97346 1.01025 0.99279 1.20967 1.21293 1.20923 0.90783 0.88932 1.24990 0.96605 0.95538 0.96129 1.69895 1.42803 1.39298 1.01654 0.86906 0.82550 0.82305 0.76727 1.20701 1.22372 1.19231 1.77349 0.95937 1.12581 1.24542 1.46290 1.04149 1.08149 1.59774 0.72102 0.90368 0.91101 0.89550 0.83775 0.89054 0.89572 0.92172 0.92650 0.91608 0.77457 0.92793 0.93513 0.94919 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.43 36.00 0.38 -0.26 16 2 C 0.08 0.91 7.21 -82.27 -0.59 0.32 16 3 C -0.27 -3.16 10.64 -40.01 -0.43 -3.59 16 4 C 0.09 1.15 6.22 -82.40 -0.51 0.63 16 5 C -0.05 -0.53 5.34 -27.88 -0.15 -0.68 16 6 C 0.15 2.18 2.55 -67.93 -0.17 2.01 16 7 H 0.09 1.66 7.52 -51.92 -0.39 1.27 16 8 C -0.16 -2.15 9.48 37.15 0.35 -1.79 16 9 N -0.74 -12.68 4.68 -53.80 -0.25 -12.93 16 10 C 0.53 12.14 7.11 -10.98 -0.08 12.06 16 11 O -0.53 -14.40 15.12 5.56 0.08 -14.31 16 12 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 13 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16 14 C -0.14 -3.02 8.57 37.16 0.32 -2.70 16 15 C -0.50 -14.98 8.95 -34.44 -0.31 -15.29 16 16 H 0.09 3.16 7.00 -52.48 -0.37 2.79 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 18 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 19 Si 0.88 21.86 24.38 -169.99 -4.14 17.72 16 20 H -0.28 -6.70 6.87 56.52 0.39 -6.32 16 21 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 23 N -0.28 -4.32 12.62 33.67 0.43 -3.90 16 24 N -0.48 -5.84 7.36 33.48 0.25 -5.60 16 25 H 0.44 4.14 8.96 -182.61 -1.64 2.50 16 26 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.39 5.73 8.02 -40.82 -0.33 5.40 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.04 3.28 -51.93 -0.17 0.87 16 38 H 0.03 0.57 7.57 -51.93 -0.39 0.18 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -36.99 321.96 -6.58 -43.57 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.07 Total: 5.92 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.50 Total: -7.70 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 1.19 Total: -50.05 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.08 Total: -14.31 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.99 -6.58 -43.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.997 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds