Wall clock time and date at job start Mon Mar 30 2020 04:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35311 * 126.12555 * 2 1 4 4 C 1.39870 * 107.91994 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.89732 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47212 * 124.99924 * 5 4 3 7 7 H 1.09008 * 109.47017 * 54.99761 * 6 5 4 8 8 C 1.52994 * 109.47404 * 174.99684 * 6 5 4 9 9 N 1.46504 * 109.47349 * 295.00023 * 6 5 4 10 10 C 1.34776 * 120.00219 * 154.99866 * 9 6 5 11 11 O 1.21274 * 120.00173 * 359.97438 * 10 9 6 12 12 C 1.50705 * 119.99786 * 180.02562 * 10 9 6 13 13 H 1.08995 * 109.47237 * 299.99994 * 12 10 9 14 14 C 1.52998 * 109.46920 * 60.00252 * 12 10 9 15 15 C 1.50699 * 109.47008 * 179.97438 * 12 10 9 16 16 H 1.08004 * 119.99705 * 0.02562 * 15 12 10 17 17 C 1.37874 * 120.00174 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99918 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 119.99827 * 359.97438 * 17 15 12 20 20 H 1.48508 * 109.46693 * 90.00218 * 19 17 15 21 21 H 1.48499 * 109.47146 * 209.99761 * 19 17 15 22 22 H 1.48492 * 109.47135 * 330.00262 * 19 17 15 23 23 N 1.30837 * 108.20220 * 0.26104 * 4 3 2 24 24 N 1.34950 * 126.12576 * 180.02562 * 2 1 3 25 25 H 0.96994 * 126.03486 * 359.95772 * 24 2 1 26 26 H 1.08997 * 109.47477 * 89.99861 * 1 2 3 27 27 H 1.09007 * 109.47220 * 209.99611 * 1 2 3 28 28 H 1.09004 * 109.47321 * 329.99141 * 1 2 3 29 29 H 1.08000 * 126.04262 * 0.06313 * 3 2 1 30 30 H 1.09002 * 109.47060 * 244.99979 * 5 4 3 31 31 H 1.09001 * 109.47380 * 5.00067 * 5 4 3 32 32 H 1.09000 * 109.47476 * 300.00087 * 8 6 5 33 33 H 1.09008 * 109.46970 * 60.00049 * 8 6 5 34 34 H 1.08996 * 109.47654 * 179.97438 * 8 6 5 35 35 H 0.97006 * 119.99491 * 334.99935 * 9 6 5 36 36 H 1.08999 * 109.47811 * 59.99626 * 14 12 10 37 37 H 1.09000 * 109.47081 * 180.02562 * 14 12 10 38 38 H 1.09005 * 109.46931 * 299.99265 * 14 12 10 39 39 H 0.97004 * 119.99593 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0929 0.0000 4 6 3.6334 0.6560 -0.0006 5 6 4.8542 1.5396 -0.0003 6 6 5.7527 1.1676 1.1809 7 1 5.9862 0.1036 1.1388 8 6 7.0489 1.9773 1.1106 9 7 5.0581 1.4658 2.4358 10 6 5.3836 0.7993 3.5611 11 8 6.2512 -0.0476 3.5348 12 6 4.6686 1.1058 4.8519 13 1 4.8219 2.1530 5.1124 14 6 3.1722 0.8361 4.6824 15 6 5.2153 0.2294 5.9493 16 1 6.0021 -0.4783 5.7336 17 6 4.7118 0.3319 7.2287 18 7 5.1892 -0.4326 8.1864 19 14 3.3524 1.5575 7.6020 20 1 2.0319 0.9085 7.4010 21 1 3.4704 2.0139 9.0102 22 1 3.4742 2.7243 6.6916 23 7 3.6333 -0.6524 -0.0066 24 7 2.3026 -1.0900 -0.0005 25 1 2.0055 -2.0133 -0.0003 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 1.9740 2.1211 0.0010 30 1 5.4030 1.4014 -0.9319 31 1 4.5483 2.5819 0.0901 32 1 7.5658 1.7554 0.1769 33 1 6.8154 3.0412 1.1526 34 1 7.6888 1.7126 1.9523 35 1 4.3638 2.1430 2.4568 36 1 3.0188 -0.2111 4.4218 37 1 2.6549 1.0582 5.6158 38 1 2.7764 1.4698 3.8886 39 1 4.8347 -0.3608 9.0865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597404153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:52 Heat of formation + Delta-G solvation = -5.991692 kcal Electronic energy + Delta-G solvation = -20456.819579 eV Core-core repulsion = 17399.460309 eV Total energy + Delta-G solvation = -3057.359269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14021 -40.68001 -37.23566 -35.77636 -33.96609 -33.33540 -32.31046 -31.30232 -28.12698 -27.75622 -27.12973 -25.10861 -22.57840 -21.40733 -21.04593 -20.57062 -18.80139 -18.22725 -17.70095 -17.17354 -16.32181 -15.99605 -15.82309 -15.17725 -14.99849 -14.67344 -14.58819 -14.27530 -14.06278 -13.98053 -13.50692 -13.44307 -13.33092 -13.05045 -13.00950 -12.78233 -12.52379 -12.43777 -12.14711 -11.96096 -11.46685 -11.29912 -11.23238 -10.78010 -10.43008 -10.19720 -9.89217 -9.45565 -8.27439 -6.35289 1.02103 1.31723 1.39189 1.50876 1.88632 1.94276 2.05575 2.34054 2.45787 3.05919 3.69274 3.81466 4.01425 4.16079 4.27089 4.38312 4.40928 4.43288 4.58317 4.65853 4.74345 4.78386 4.80540 4.86918 4.89411 4.95774 4.99706 5.13860 5.20841 5.31623 5.39584 5.42322 5.52820 5.74329 5.81616 6.27755 6.50586 6.71246 6.83511 6.91089 7.26385 7.59955 8.90711 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.006157 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.715994 B = 4546.500565 C = 5482.317848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.086 3.914 3 C -0.283 4.283 4 C 0.072 3.928 5 C -0.037 4.037 6 C 0.145 3.855 7 H 0.047 0.953 8 C -0.156 4.156 9 N -0.712 5.712 10 C 0.527 3.473 11 O -0.590 6.590 12 C -0.008 4.008 13 H 0.071 0.929 14 C -0.131 4.131 15 C -0.521 4.521 16 H 0.024 0.976 17 C 0.003 3.997 18 N -0.955 5.955 19 Si 0.963 3.037 20 H -0.262 1.262 21 H -0.298 1.298 22 H -0.227 1.227 23 N -0.339 5.339 24 N -0.482 5.482 25 H 0.442 0.558 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.172 0.828 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.411 0.589 36 H 0.033 0.967 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 9.941 -21.223 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.312 4.312 4 C -0.094 4.094 5 C -0.076 4.076 6 C 0.040 3.960 7 H 0.065 0.935 8 C -0.214 4.214 9 N -0.365 5.365 10 C 0.315 3.685 11 O -0.469 6.469 12 C -0.030 4.030 13 H 0.088 0.912 14 C -0.188 4.188 15 C -0.559 4.559 16 H 0.043 0.957 17 C -0.193 4.193 18 N -0.595 5.595 19 Si 0.787 3.213 20 H -0.188 1.188 21 H -0.225 1.225 22 H -0.150 1.150 23 N -0.163 5.163 24 N -0.191 5.191 25 H 0.286 0.714 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.189 0.811 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.247 0.753 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.531 8.256 -21.113 25.434 hybrid contribution -0.807 -0.108 0.922 1.230 sum -12.338 8.147 -20.191 25.026 Atomic orbital electron populations 1.20590 0.84568 1.05065 1.04597 1.21791 0.96256 0.87214 0.99031 1.21488 0.90798 1.00494 1.18436 1.22562 0.96937 0.91393 0.98535 1.20444 0.90366 0.98781 0.98023 1.20887 0.92687 0.99250 0.83187 0.93491 1.22126 0.96092 1.01183 1.02003 1.45945 1.41165 1.41633 1.07803 1.21007 0.81852 0.79554 0.86108 1.90557 1.34671 1.35254 1.86427 1.19251 0.94188 0.98834 0.90703 0.91151 1.21927 0.94828 1.00970 1.01062 1.21106 1.20349 1.20981 0.93481 0.95740 1.26096 0.99869 0.98016 0.95299 1.70098 1.45106 1.41887 1.02411 0.85663 0.78472 0.80159 0.77023 1.18750 1.22522 1.15020 1.77289 0.97965 1.14191 1.26867 1.46385 1.03683 1.09138 1.59912 0.71382 0.88500 0.90462 0.88178 0.81088 0.87163 0.85900 0.89616 0.89765 0.95531 0.75264 0.94792 0.93450 0.89851 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.43 71.24 0.74 -0.16 16 2 C 0.09 1.64 7.21 41.40 0.30 1.93 16 3 C -0.28 -5.63 10.64 21.99 0.23 -5.39 16 4 C 0.07 1.78 6.22 43.10 0.27 2.05 16 5 C -0.04 -0.73 5.34 29.85 0.16 -0.57 16 6 C 0.15 4.18 2.55 44.99 0.11 4.29 16 7 H 0.05 1.79 7.52 -2.38 -0.02 1.78 16 8 C -0.16 -3.88 9.48 71.98 0.68 -3.20 16 9 N -0.71 -23.25 4.68 -442.53 -2.07 -25.33 16 10 C 0.53 24.48 7.11 87.66 0.62 25.11 16 11 O -0.59 -34.08 15.12 -3.01 -0.05 -34.12 16 12 C -0.01 -0.39 2.23 -12.29 -0.03 -0.42 16 13 H 0.07 3.10 7.20 -2.39 -0.02 3.08 16 14 C -0.13 -5.26 8.57 71.98 0.62 -4.64 16 15 C -0.52 -32.49 8.95 25.60 0.23 -32.26 16 16 H 0.02 1.81 7.00 -2.91 -0.02 1.79 16 17 C 0.00 0.19 5.45 84.65 0.46 0.65 16 18 N -0.95 -62.99 13.96 21.45 0.30 -62.69 16 19 Si 0.96 43.98 24.38 68.60 1.67 45.65 16 20 H -0.26 -11.18 6.87 99.48 0.68 -10.50 16 21 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.23 -8.90 6.53 99.48 0.65 -8.25 16 23 N -0.34 -10.34 12.62 -47.38 -0.60 -10.94 16 24 N -0.48 -11.42 7.36 -48.00 -0.35 -11.78 16 25 H 0.44 8.33 8.96 -213.34 -1.91 6.42 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.12 1.53 8.12 -2.39 -0.02 1.51 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.41 10.30 8.02 -92.70 -0.74 9.56 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.91 3.28 -2.39 -0.01 1.90 16 38 H 0.08 2.50 7.57 -2.38 -0.02 2.48 16 39 H 0.27 16.24 8.31 -92.70 -0.77 15.47 16 Total: -1.00 -89.42 321.96 1.64 -87.78 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -1.67 Total: 24.03 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 4.40 Total: -12.61 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -2.72 Total: -110.73 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.05 Total: -34.12 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.67 Total: 45.65 kcal Total: -89.42 1.64 -87.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.792 kcal (2) G-P(sol) polarization free energy of solvation -89.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds