Wall clock time and date at job start Mon Mar 30 2020 04:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35317 * 126.12557 * 2 1 4 4 C 1.39865 * 107.91775 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.89987 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47073 * 124.99914 * 5 4 3 7 7 H 1.09005 * 109.47365 * 305.00177 * 6 5 4 8 8 C 1.53005 * 109.47376 * 185.00284 * 6 5 4 9 9 N 1.46500 * 109.47169 * 65.00241 * 6 5 4 10 10 C 1.34777 * 119.99750 * 204.99754 * 9 6 5 11 11 O 1.21275 * 120.00643 * 0.02562 * 10 9 6 12 12 C 1.50708 * 119.99487 * 180.02562 * 10 9 6 13 13 H 1.08996 * 109.46993 * 299.99601 * 12 10 9 14 14 C 1.52997 * 109.47141 * 60.00428 * 12 10 9 15 15 C 1.50706 * 109.46685 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 10 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 N 1.30841 * 108.20341 * 0.26383 * 4 3 2 24 24 N 1.34945 * 126.12332 * 180.02562 * 2 1 3 25 25 H 0.96997 * 126.04428 * 359.95413 * 24 2 1 26 26 H 1.08999 * 109.46891 * 90.00204 * 1 2 3 27 27 H 1.08992 * 109.47062 * 210.00205 * 1 2 3 28 28 H 1.09000 * 109.47165 * 330.00152 * 1 2 3 29 29 H 1.07998 * 126.03931 * 0.05366 * 3 2 1 30 30 H 1.09001 * 109.47279 * 5.00036 * 5 4 3 31 31 H 1.09003 * 109.47727 * 245.00101 * 5 4 3 32 32 H 1.08994 * 109.47183 * 300.00141 * 8 6 5 33 33 H 1.09001 * 109.47204 * 59.99835 * 8 6 5 34 34 H 1.09002 * 109.47355 * 180.02562 * 8 6 5 35 35 H 0.96996 * 119.99986 * 25.00356 * 9 6 5 36 36 H 1.09002 * 109.47153 * 299.99670 * 14 12 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 38 38 H 1.09004 * 109.47261 * 59.99842 * 14 12 10 39 39 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 -0.0006 5 6 4.8543 1.5394 -0.0013 6 6 5.7531 1.1684 1.1799 7 1 5.1784 1.2218 2.1046 8 6 6.9287 2.1449 1.2529 9 7 6.2605 -0.1939 0.9984 10 6 6.6321 -0.9228 2.0694 11 8 6.5462 -0.4513 3.1834 12 6 7.1546 -2.3240 1.8825 13 1 6.3917 -2.9350 1.4001 14 6 8.4086 -2.2882 1.0067 15 6 7.4963 -2.9160 3.2257 16 1 7.3501 -2.3355 4.1246 17 6 7.9954 -4.1987 3.3069 18 7 8.2940 -4.7150 4.4790 19 14 8.2490 -5.2024 1.7521 20 1 9.6191 -4.9682 1.2296 21 1 8.0765 -6.6448 2.0605 22 1 7.2527 -4.7922 0.7301 23 7 3.6334 -0.6524 -0.0067 24 7 2.3026 -1.0900 -0.0005 25 1 2.0056 -2.0134 -0.0003 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.9741 2.1211 0.0008 30 1 4.5485 2.5818 0.0882 31 1 5.4029 1.4005 -0.9330 32 1 7.5033 2.0915 0.3283 33 1 6.5512 3.1585 1.3879 34 1 7.5692 1.8803 2.0941 35 1 6.3290 -0.5712 0.1074 36 1 8.1611 -1.8602 0.0352 37 1 8.7867 -3.3016 0.8719 38 1 9.1715 -1.6772 1.4892 39 1 8.6456 -5.6173 4.5361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597404154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:55 Heat of formation + Delta-G solvation = 24.163595 kcal Electronic energy + Delta-G solvation = -20326.439506 eV Core-core repulsion = 17270.387868 eV Total energy + Delta-G solvation = -3056.051638 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25221 -38.92442 -35.83780 -33.67094 -32.74987 -31.69749 -31.14194 -29.90222 -27.30163 -26.89397 -25.01985 -23.26855 -21.21212 -20.51714 -19.67502 -19.16565 -17.34265 -16.65956 -15.90080 -15.59302 -14.99119 -14.50441 -14.26941 -14.03119 -13.85558 -13.32218 -13.20896 -12.97973 -12.78064 -12.65396 -12.44139 -12.29380 -12.12239 -11.98617 -11.44239 -11.35693 -10.94290 -10.76024 -10.51069 -10.43486 -10.17895 -9.54167 -9.23542 -8.98178 -8.62336 -8.52843 -8.44859 -8.29008 -5.96550 -3.95239 1.87599 2.75737 2.87166 3.29532 3.38422 3.41926 3.81444 4.00377 4.46020 4.47846 4.65832 4.87079 5.00049 5.19113 5.24807 5.33407 5.38963 5.53923 5.65609 5.68393 5.74573 5.78062 5.88690 6.00790 6.07615 6.24278 6.30446 6.45709 6.49887 6.60063 6.65455 6.87003 7.24171 7.29959 7.31065 7.67595 7.74751 8.36193 8.68759 9.22940 9.35252 9.64070 11.16720 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.005554 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.449059 B = 5039.846007 C = 5801.577879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.080 3.920 3 C -0.271 4.271 4 C 0.076 3.924 5 C -0.046 4.046 6 C 0.147 3.853 7 H 0.083 0.917 8 C -0.161 4.161 9 N -0.731 5.731 10 C 0.533 3.467 11 O -0.539 6.539 12 C -0.005 4.005 13 H 0.051 0.949 14 C -0.142 4.142 15 C -0.500 4.500 16 H 0.092 0.908 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.884 3.116 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.267 1.267 23 N -0.268 5.268 24 N -0.475 5.475 25 H 0.437 0.563 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.104 12.257 -14.466 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.301 4.301 4 C -0.091 4.091 5 C -0.086 4.086 6 C 0.041 3.959 7 H 0.101 0.899 8 C -0.220 4.220 9 N -0.384 5.384 10 C 0.321 3.679 11 O -0.414 6.414 12 C -0.027 4.027 13 H 0.068 0.932 14 C -0.200 4.200 15 C -0.538 4.538 16 H 0.110 0.890 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.715 3.285 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.193 1.193 23 N -0.091 5.091 24 N -0.184 5.184 25 H 0.280 0.720 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.162 0.838 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.229 0.771 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.385 11.405 -13.534 21.602 hybrid contribution -0.480 -0.670 -1.219 1.471 sum -12.865 10.736 -14.753 22.325 Atomic orbital electron populations 1.20435 0.87523 1.03919 1.03146 1.21087 0.94489 0.87970 1.01362 1.21107 0.91720 0.98949 1.18293 1.22205 0.95399 0.91831 0.99665 1.20406 0.91166 0.97453 0.99568 1.20713 0.93907 0.83234 0.98039 0.89858 1.22178 0.98807 0.98441 1.02574 1.46153 1.67838 1.14338 1.10109 1.21104 0.75351 0.87924 0.83480 1.90554 1.53596 1.72453 1.24845 1.19277 0.94470 0.90061 0.98842 0.93175 1.22087 0.99702 1.00763 0.97424 1.20982 1.41951 0.99168 0.91702 0.88991 1.24981 0.95237 0.97312 0.95732 1.69896 1.44680 1.15900 1.23353 0.86913 0.78665 0.78773 0.84181 1.20588 1.22505 1.19257 1.77461 0.95616 1.12377 1.23635 1.46379 1.04265 1.08214 1.59492 0.71983 0.90343 0.91126 0.89685 0.83821 0.88779 0.89840 0.92649 0.92203 0.91602 0.77124 0.94856 0.93548 0.92506 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.43 36.01 0.38 -0.22 16 2 C 0.08 0.85 7.21 -82.26 -0.59 0.26 16 3 C -0.27 -3.14 10.64 -40.01 -0.43 -3.57 16 4 C 0.08 1.03 6.46 -82.41 -0.53 0.50 16 5 C -0.05 -0.52 5.34 -27.89 -0.15 -0.67 16 6 C 0.15 2.18 2.56 -67.93 -0.17 2.01 16 7 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 8 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 9 N -0.73 -12.94 4.01 -53.80 -0.22 -13.16 16 10 C 0.53 12.40 7.11 -10.98 -0.08 12.33 16 11 O -0.54 -14.65 15.12 5.56 0.08 -14.56 16 12 C 0.00 -0.12 2.23 -92.92 -0.21 -0.33 16 13 H 0.05 1.25 7.20 -51.93 -0.37 0.87 16 14 C -0.14 -3.10 8.57 37.16 0.32 -2.78 16 15 C -0.50 -15.09 8.96 -34.44 -0.31 -15.40 16 16 H 0.09 3.16 7.00 -52.49 -0.37 2.79 16 17 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 18 N -0.90 -28.67 13.96 55.43 0.77 -27.90 16 19 Si 0.88 22.23 24.37 -169.99 -4.14 18.09 16 20 H -0.28 -6.77 6.87 56.52 0.39 -6.38 16 21 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 23 N -0.27 -4.13 11.74 33.67 0.40 -3.74 16 24 N -0.48 -5.92 7.36 33.48 0.25 -5.67 16 25 H 0.44 4.36 8.96 -182.61 -1.64 2.72 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.39 6.31 7.93 -40.82 -0.32 5.99 16 36 H 0.03 0.59 7.57 -51.93 -0.39 0.19 16 37 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -37.11 320.63 -6.61 -43.72 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.07 Total: 6.07 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.52 Total: -7.68 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 1.20 Total: -50.47 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.11 -6.61 -43.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.883 kcal (2) G-P(sol) polarization free energy of solvation -37.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds