Wall clock time and date at job start Mon Mar 30 2020 04:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 C 1.50702 * 109.47588 * 179.97438 * 3 2 1 5 5 C 1.39757 * 125.83659 * 125.29748 * 4 3 2 6 6 C 1.36115 * 107.82183 * 180.14971 * 5 4 3 7 7 N 1.39479 * 126.21209 * 179.84530 * 6 5 4 8 8 C 1.34778 * 119.99911 * 359.69445 * 7 6 5 9 9 O 1.21288 * 120.00190 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99637 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.47120 * 299.99695 * 10 8 7 12 12 C 1.52997 * 109.47466 * 59.99942 * 10 8 7 13 13 C 1.50708 * 109.47025 * 180.02562 * 10 8 7 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 8 16 16 N 1.31509 * 120.00195 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99968 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46809 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46948 * 120.00245 * 17 15 13 20 20 H 1.48497 * 109.47378 * 240.00531 * 17 15 13 21 21 N 1.35258 * 107.57186 * 359.58814 * 6 5 4 22 22 C 1.46493 * 126.04859 * 180.22501 * 21 6 5 23 23 N 1.30849 * 125.83529 * 304.98196 * 4 3 2 24 24 H 1.09003 * 109.47097 * 60.00005 * 1 2 3 25 25 H 1.08997 * 109.47381 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47279 * 299.99965 * 1 2 3 27 27 H 1.08999 * 109.47211 * 240.00585 * 2 1 3 28 28 H 1.08999 * 109.47330 * 120.00705 * 2 1 3 29 29 H 1.09004 * 109.47234 * 60.00173 * 3 2 1 30 30 H 1.08999 * 109.47531 * 300.00582 * 3 2 1 31 31 H 1.07998 * 126.08959 * 0.02562 * 5 4 3 32 32 H 0.97000 * 119.99643 * 179.68772 * 7 6 5 33 33 H 1.09002 * 109.47153 * 59.99773 * 12 10 8 34 34 H 1.09001 * 109.46832 * 299.99964 * 12 10 8 35 35 H 1.09004 * 109.47261 * 179.97438 * 12 10 8 36 36 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.47252 * 89.99939 * 22 21 6 38 38 H 1.08997 * 109.47083 * 209.99638 * 22 21 6 39 39 H 1.08995 * 109.47182 * 330.00027 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3656 2.0971 -0.9238 6 6 5.6599 1.8513 -0.5816 7 7 6.7918 2.3190 -1.2491 8 6 6.6566 3.0877 -2.3479 9 8 5.5507 3.3732 -2.7560 10 6 7.8796 3.5934 -3.0687 11 1 8.4739 4.2057 -2.3904 12 6 8.7161 2.4059 -3.5491 13 6 7.4570 4.4231 -4.2538 14 1 6.4078 4.5691 -4.4641 15 6 8.4099 4.9956 -5.0693 16 7 9.6875 4.8174 -4.8134 17 14 7.8861 6.0234 -6.5387 18 1 6.4034 6.0695 -6.6071 19 1 8.4177 7.4023 -6.3929 20 1 8.4208 5.4158 -7.7836 21 7 5.6491 1.0758 0.5265 22 6 6.8266 0.5760 1.2405 23 7 4.3128 0.8346 0.8702 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 4.0309 2.6906 -1.7618 32 1 7.6762 2.0910 -0.9224 33 1 8.1218 1.7936 -4.2274 34 1 9.0217 1.8063 -2.6917 35 1 9.6004 2.7717 -4.0708 36 1 10.3579 5.2200 -5.3875 37 1 7.1188 1.2940 2.0068 38 1 6.5890 -0.3790 1.7092 39 1 7.6480 0.4411 0.5369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597466629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:08 Heat of formation + Delta-G solvation = 7.320001 kcal Electronic energy + Delta-G solvation = -19935.952346 eV Core-core repulsion = 16879.170315 eV Total energy + Delta-G solvation = -3056.782031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.54164 -40.55230 -36.68556 -35.88205 -35.44930 -33.64373 -32.64060 -29.91578 -29.16177 -27.24439 -26.35672 -25.02229 -22.77485 -22.48052 -21.06258 -20.54226 -18.71519 -18.29273 -17.38707 -16.87741 -16.78981 -16.21792 -15.75504 -15.65206 -15.16181 -14.84547 -14.56235 -14.42628 -14.19618 -13.68737 -13.44794 -13.30953 -13.03408 -12.95953 -12.72371 -12.63218 -12.39691 -12.27678 -12.13797 -12.05961 -11.85449 -11.62791 -11.33877 -11.07778 -10.66248 -10.40824 -9.76289 -9.11992 -8.17867 -6.28015 0.69443 1.19243 1.40787 1.44056 1.56809 1.62297 2.04709 2.21512 2.46103 3.13123 3.50833 3.79780 4.08396 4.15914 4.22678 4.37808 4.51385 4.56939 4.59950 4.62595 4.70009 4.85475 4.85949 4.88253 4.95141 5.01409 5.06072 5.08012 5.25302 5.35698 5.44641 5.49139 5.71726 5.77607 5.88842 6.01082 6.14828 6.43519 6.76577 6.82060 7.21087 7.41559 8.88233 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.004412 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.033484 B = 6345.465331 C = 7276.980413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.037 4.037 4 C 0.086 3.914 5 C -0.318 4.318 6 C 0.309 3.691 7 N -0.643 5.643 8 C 0.528 3.472 9 O -0.541 6.541 10 C 0.036 3.964 11 H 0.053 0.947 12 C -0.124 4.124 13 C -0.531 4.531 14 H 0.052 0.948 15 C 0.024 3.976 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.279 1.279 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.391 5.391 22 C 0.088 3.912 23 N -0.309 5.309 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.423 0.577 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.266 0.734 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -9.695 11.883 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.080 4.080 5 C -0.350 4.350 6 C 0.088 3.912 7 N -0.292 5.292 8 C 0.318 3.682 9 O -0.415 6.415 10 C 0.014 3.986 11 H 0.071 0.929 12 C -0.182 4.182 13 C -0.569 4.569 14 H 0.070 0.930 15 C -0.176 4.176 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.204 1.204 19 H -0.201 1.201 20 H -0.200 1.200 21 N -0.179 5.179 22 C -0.051 4.051 23 N -0.133 5.133 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.262 0.738 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.191 -10.181 12.582 17.711 hybrid contribution 0.587 1.094 -1.454 1.912 sum -6.604 -9.086 11.128 15.811 Atomic orbital electron populations 1.21750 0.93831 1.02386 1.02485 1.21395 0.97000 0.94775 1.01735 1.20180 0.84406 0.99007 1.03973 1.22539 0.97904 0.95155 0.92398 1.21560 0.90514 1.14905 1.07982 1.18251 0.89454 0.94661 0.88843 1.43203 1.07232 1.50988 1.27803 1.21982 0.92842 0.75373 0.77983 1.90492 1.28966 1.56526 1.65478 1.18825 0.89130 0.95621 0.95003 0.92922 1.21627 1.01065 0.95482 1.00047 1.21288 0.93374 1.31197 1.11041 0.92958 1.25535 0.94909 0.97154 1.00016 1.69928 1.00132 1.45049 1.39669 0.85548 0.78141 0.78737 0.79511 1.20389 1.20070 1.20020 1.48717 1.06844 1.41220 1.21115 1.22214 0.82950 1.02114 0.97839 1.77207 0.85552 1.26588 1.23911 0.92297 0.91877 0.91759 0.93166 0.91980 0.89033 0.89671 0.83635 0.73840 0.95621 0.92650 0.90528 0.92475 0.89248 0.87557 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.11 -2.37 5.89 30.59 0.18 -2.19 16 3 C -0.04 -0.90 5.79 29.85 0.17 -0.73 16 4 C 0.09 2.80 6.48 43.07 0.28 3.08 16 5 C -0.32 -12.28 9.57 22.14 0.21 -12.07 16 6 C 0.31 10.92 7.66 131.32 1.01 11.93 16 7 N -0.64 -22.12 5.31 -308.56 -1.64 -23.76 16 8 C 0.53 23.40 7.11 87.66 0.62 24.02 16 9 O -0.54 -27.72 12.59 -3.05 -0.04 -27.76 16 10 C 0.04 1.68 2.64 -12.29 -0.03 1.65 16 11 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 12 C -0.12 -5.27 8.87 71.98 0.64 -4.63 16 13 C -0.53 -29.41 8.37 25.60 0.21 -29.20 16 14 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 15 C 0.02 1.27 5.30 84.65 0.45 1.72 16 16 N -0.91 -48.86 11.32 21.44 0.24 -48.62 16 17 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 N -0.39 -11.50 4.02 -366.46 -1.47 -12.98 16 22 C 0.09 1.56 11.28 127.77 1.44 3.01 16 23 N -0.31 -9.85 12.53 -47.45 -0.59 -10.44 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 31 H 0.15 6.41 5.83 -2.91 -0.02 6.39 16 32 H 0.42 11.17 7.38 -92.71 -0.68 10.48 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.81 7.56 -2.39 -0.02 1.79 16 35 H 0.08 3.62 6.07 -2.38 -0.01 3.60 16 36 H 0.27 13.54 8.31 -92.70 -0.77 12.77 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.37 7.50 -2.39 -0.02 1.35 16 Total: -1.00 -67.86 324.46 4.79 -63.08 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.37 Total: 19.91 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.90 Total: -5.05 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -3.46 Total: -95.80 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.04 Total: -27.76 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -67.86 4.79 -63.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597466629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.396 kcal (2) G-P(sol) polarization free energy of solvation -67.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds