Wall clock time and date at job start Mon Mar 30 2020 04:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35313 * 126.12759 * 2 1 4 4 C 1.50694 * 126.04395 * 0.02562 * 3 2 1 5 5 N 1.46499 * 109.47662 * 186.04078 * 4 3 2 6 6 C 1.46496 * 120.00025 * 266.09318 * 5 4 3 7 7 C 1.34776 * 119.99720 * 86.08964 * 5 4 3 8 8 O 1.21282 * 119.99945 * 0.02562 * 7 5 4 9 9 C 1.50696 * 119.99995 * 179.72355 * 7 5 4 10 10 H 1.09009 * 109.47065 * 60.28060 * 9 7 5 11 11 C 1.52996 * 109.47608 * 300.28299 * 9 7 5 12 12 C 1.50695 * 109.47477 * 180.27663 * 9 7 5 13 13 H 1.08008 * 119.99832 * 0.02562 * 12 9 7 14 14 C 1.37875 * 120.00197 * 180.02562 * 12 9 7 15 15 N 1.31510 * 120.00117 * 0.02562 * 14 12 9 16 16 Si 1.86812 * 119.99920 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47020 * 60.00401 * 16 14 12 18 18 H 1.48502 * 109.47034 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46894 * 300.00122 * 16 14 12 20 20 C 1.39873 * 107.91883 * 180.28155 * 3 2 1 21 21 N 1.30842 * 108.20324 * 359.55603 * 20 3 2 22 22 N 1.34953 * 126.12564 * 180.02562 * 2 1 3 23 23 C 1.46498 * 126.03463 * 359.95946 * 22 2 1 24 24 H 1.09009 * 109.47116 * 85.21123 * 1 2 3 25 25 H 1.08995 * 109.47594 * 205.21579 * 1 2 3 26 26 H 1.09001 * 109.47423 * 325.21724 * 1 2 3 27 27 H 1.09003 * 109.47000 * 66.04032 * 4 3 2 28 28 H 1.08999 * 109.47063 * 306.04948 * 4 3 2 29 29 H 1.09000 * 109.47234 * 272.47381 * 6 5 4 30 30 H 1.08999 * 109.47117 * 32.47533 * 6 5 4 31 31 H 1.09002 * 109.47024 * 152.47209 * 6 5 4 32 32 H 1.09003 * 109.47137 * 300.00006 * 11 9 7 33 33 H 1.09003 * 109.47245 * 59.99079 * 11 9 7 34 34 H 1.08994 * 109.47288 * 179.97438 * 11 9 7 35 35 H 0.97006 * 120.00015 * 180.02562 * 15 14 12 36 36 H 1.08005 * 125.89694 * 179.73375 * 20 3 2 37 37 H 1.09000 * 109.47105 * 90.00152 * 23 22 2 38 38 H 1.09002 * 109.46920 * 209.99880 * 23 22 2 39 39 H 1.08996 * 109.47505 * 329.99781 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5275 0.0005 5 7 3.0013 3.4131 -0.1450 6 6 3.6553 3.9651 1.0440 7 6 3.4649 3.7198 -1.3728 8 8 2.9232 3.2631 -2.3571 9 6 4.6522 4.6357 -1.5228 10 1 5.5151 4.1970 -1.0216 11 6 4.3322 5.9928 -0.8930 12 6 4.9619 4.8213 -2.9858 13 1 4.3589 4.3259 -3.7325 14 6 6.0149 5.6235 -3.3712 15 7 6.7494 6.2264 -2.4621 16 14 6.3983 5.8541 -5.1850 17 1 5.2230 6.4527 -5.8671 18 1 7.5691 6.7556 -5.3327 19 1 6.7080 4.5370 -5.7968 20 6 3.6334 0.6559 -0.0065 21 7 3.6334 -0.6525 -0.0007 22 7 2.3026 -1.0900 -0.0005 23 6 1.8538 -2.4846 -0.0003 24 1 -0.3634 0.0858 -1.0242 25 1 -0.3634 -0.9297 0.4378 26 1 -0.3634 0.8440 0.5862 27 1 1.3352 2.7454 0.9399 28 1 1.1561 2.6884 -0.8300 29 1 3.1625 4.8938 1.3316 30 1 3.5861 3.2485 1.8624 31 1 4.7040 4.1637 0.8226 32 1 3.4694 6.4316 -1.3941 33 1 4.1082 5.8586 0.1653 34 1 5.1911 6.6551 -1.0011 35 1 7.4900 6.7911 -2.7333 36 1 4.5084 1.2891 -0.0122 37 1 1.7419 -2.8304 -1.0279 38 1 2.5900 -3.1031 0.5131 39 1 0.8957 -2.5579 0.5141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597588244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:22 Heat of formation + Delta-G solvation = 47.087211 kcal Electronic energy + Delta-G solvation = -20542.390857 eV Core-core repulsion = 17487.333262 eV Total energy + Delta-G solvation = -3055.057595 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16089 -38.90706 -34.99302 -33.84075 -33.23280 -32.32489 -30.47062 -28.24549 -26.65187 -26.16275 -24.98819 -24.80788 -21.94731 -20.58325 -19.36688 -18.32551 -16.51468 -16.11879 -15.84290 -15.46029 -15.13716 -14.68429 -14.26656 -14.07762 -13.53970 -13.34729 -13.07528 -12.75626 -12.68769 -12.54480 -12.28490 -12.13542 -12.04059 -11.95091 -11.58551 -11.10401 -10.91974 -10.67134 -10.44276 -10.35960 -10.16893 -9.89167 -9.07864 -8.89368 -8.50774 -8.21406 -8.07545 -7.99232 -5.96364 -3.98688 1.98926 2.62891 3.03101 3.40967 3.42846 3.48620 3.77283 3.82396 4.52510 4.56227 4.69617 4.95363 5.05212 5.23622 5.31185 5.36995 5.38332 5.53847 5.63335 5.66555 5.71488 5.73838 5.96086 6.15077 6.21608 6.22949 6.33394 6.73241 6.87150 6.92848 7.01400 7.12342 7.27513 7.55357 7.82759 7.90615 8.05175 8.19688 8.48378 9.09540 9.33744 9.66422 11.11188 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.004970 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.178195 B = 5632.707074 C = 6019.669265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.076 3.924 3 C -0.239 4.239 4 C 0.197 3.803 5 N -0.629 5.629 6 C 0.085 3.915 7 C 0.520 3.480 8 O -0.540 6.540 9 C 0.032 3.968 10 H 0.051 0.949 11 C -0.143 4.143 12 C -0.499 4.499 13 H 0.072 0.928 14 C 0.059 3.941 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.075 3.925 21 N -0.304 5.304 22 N -0.380 5.380 23 C 0.104 3.896 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.091 0.909 35 H 0.260 0.740 36 H 0.179 0.821 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.299 -10.885 10.539 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.251 4.251 4 C 0.073 3.927 5 N -0.364 5.364 6 C -0.058 4.058 7 C 0.312 3.688 8 O -0.415 6.415 9 C 0.011 3.989 10 H 0.069 0.931 11 C -0.201 4.201 12 C -0.537 4.537 13 H 0.090 0.910 14 C -0.142 4.142 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.111 4.111 21 N -0.124 5.124 22 N -0.164 5.164 23 C -0.037 4.037 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.196 0.804 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.747 -12.211 10.001 19.095 hybrid contribution -0.111 0.785 -0.902 1.201 sum -10.858 -11.426 9.099 18.200 Atomic orbital electron populations 1.20415 0.87557 1.03170 1.03491 1.20679 0.94251 0.87044 1.03158 1.20390 0.92875 0.96045 1.15839 1.19406 0.88460 0.83747 1.01127 1.48019 1.32122 1.49173 1.07133 1.21872 0.99131 0.97667 0.87168 1.22006 0.85648 0.80327 0.80867 1.90525 1.59434 1.53743 1.37797 1.18825 0.89968 0.91298 0.98828 0.93141 1.21976 1.02286 0.99748 0.96094 1.21117 1.13631 1.28147 0.90812 0.90993 1.24924 0.95921 0.95603 0.97721 1.69861 1.19352 1.31822 1.32652 0.86542 0.77543 0.77989 0.85271 1.20259 1.21413 1.20269 1.23649 0.97913 0.91441 0.98074 1.77355 0.96177 1.13194 1.25689 1.48351 1.04079 1.05583 1.58383 1.21734 1.00605 0.78357 1.03045 0.90105 0.91565 0.89772 0.90938 0.90180 0.92945 0.92619 0.89991 0.95291 0.95557 0.89085 0.93011 0.80423 0.91098 0.89579 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.91 36.01 0.36 -0.44 16 2 C 0.08 1.04 6.93 -82.26 -0.57 0.47 16 3 C -0.24 -3.85 6.03 -105.06 -0.63 -4.49 16 4 C 0.20 3.07 5.52 -5.20 -0.03 3.04 16 5 N -0.63 -11.30 2.16 -182.96 -0.40 -11.69 16 6 C 0.08 1.24 8.78 59.84 0.53 1.76 16 7 C 0.52 12.09 6.99 -10.99 -0.08 12.02 16 8 O -0.54 -14.45 15.10 5.56 0.08 -14.37 16 9 C 0.03 0.80 1.83 -92.93 -0.17 0.63 16 10 H 0.05 1.31 7.41 -51.92 -0.38 0.92 16 11 C -0.14 -3.29 8.58 37.16 0.32 -2.97 16 12 C -0.50 -14.40 8.37 -34.44 -0.29 -14.69 16 13 H 0.07 2.21 6.75 -52.48 -0.35 1.85 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.90 -25.40 11.32 55.43 0.63 -24.78 16 16 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.08 1.34 11.29 -17.36 -0.20 1.14 16 21 N -0.30 -5.31 12.58 30.63 0.39 -4.93 16 22 N -0.38 -5.39 4.01 -63.89 -0.26 -5.65 16 23 C 0.10 0.93 11.27 59.85 0.67 1.60 16 24 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.07 0.44 6.95 -51.93 -0.36 0.08 16 26 H 0.08 0.65 8.01 -51.93 -0.42 0.24 16 27 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 28 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 29 H 0.05 0.70 7.10 -51.93 -0.37 0.33 16 30 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.08 1.29 5.83 -51.93 -0.30 0.99 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.49 4.56 -51.93 -0.24 0.26 16 34 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.18 3.20 7.86 -52.48 -0.41 2.79 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.49 6.98 -51.93 -0.36 0.13 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -34.74 318.92 -5.52 -40.26 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.57 Total: -0.53 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.18 Total: -0.36 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.36 Total: -47.04 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.08 Total: -14.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.74 -5.52 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597588244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.346 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds