Wall clock time and date at job start Mon Mar 30 2020 04:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35313 * 126.12759 * 2 1 4 4 C 1.50694 * 126.04395 * 0.02562 * 3 2 1 5 5 N 1.46499 * 109.47662 * 186.04078 * 4 3 2 6 6 C 1.46496 * 120.00025 * 266.09318 * 5 4 3 7 7 C 1.34776 * 119.99720 * 86.08964 * 5 4 3 8 8 O 1.21282 * 119.99945 * 0.02562 * 7 5 4 9 9 C 1.50696 * 119.99995 * 179.72355 * 7 5 4 10 10 H 1.09009 * 109.47065 * 60.28060 * 9 7 5 11 11 C 1.52996 * 109.47608 * 300.28299 * 9 7 5 12 12 C 1.50695 * 109.47477 * 180.27663 * 9 7 5 13 13 H 1.08008 * 119.99832 * 0.02562 * 12 9 7 14 14 C 1.37875 * 120.00197 * 180.02562 * 12 9 7 15 15 N 1.31510 * 120.00117 * 0.02562 * 14 12 9 16 16 Si 1.86812 * 119.99920 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47020 * 60.00401 * 16 14 12 18 18 H 1.48502 * 109.47034 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46894 * 300.00122 * 16 14 12 20 20 C 1.39873 * 107.91883 * 180.28155 * 3 2 1 21 21 N 1.30842 * 108.20324 * 359.55603 * 20 3 2 22 22 N 1.34953 * 126.12564 * 180.02562 * 2 1 3 23 23 C 1.46498 * 126.03463 * 359.95946 * 22 2 1 24 24 H 1.09009 * 109.47116 * 85.21123 * 1 2 3 25 25 H 1.08995 * 109.47594 * 205.21579 * 1 2 3 26 26 H 1.09001 * 109.47423 * 325.21724 * 1 2 3 27 27 H 1.09003 * 109.47000 * 66.04032 * 4 3 2 28 28 H 1.08999 * 109.47063 * 306.04948 * 4 3 2 29 29 H 1.09000 * 109.47234 * 272.47381 * 6 5 4 30 30 H 1.08999 * 109.47117 * 32.47533 * 6 5 4 31 31 H 1.09002 * 109.47024 * 152.47209 * 6 5 4 32 32 H 1.09003 * 109.47137 * 300.00006 * 11 9 7 33 33 H 1.09003 * 109.47245 * 59.99079 * 11 9 7 34 34 H 1.08994 * 109.47288 * 179.97438 * 11 9 7 35 35 H 0.97006 * 120.00015 * 180.02562 * 15 14 12 36 36 H 1.08005 * 125.89694 * 179.73375 * 20 3 2 37 37 H 1.09000 * 109.47105 * 90.00152 * 23 22 2 38 38 H 1.09002 * 109.46920 * 209.99880 * 23 22 2 39 39 H 1.08996 * 109.47505 * 329.99781 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5275 0.0005 5 7 3.0013 3.4131 -0.1450 6 6 3.6553 3.9651 1.0440 7 6 3.4649 3.7198 -1.3728 8 8 2.9232 3.2631 -2.3571 9 6 4.6522 4.6357 -1.5228 10 1 5.5151 4.1970 -1.0216 11 6 4.3322 5.9928 -0.8930 12 6 4.9619 4.8213 -2.9858 13 1 4.3589 4.3259 -3.7325 14 6 6.0149 5.6235 -3.3712 15 7 6.7494 6.2264 -2.4621 16 14 6.3983 5.8541 -5.1850 17 1 5.2230 6.4527 -5.8671 18 1 7.5691 6.7556 -5.3327 19 1 6.7080 4.5370 -5.7968 20 6 3.6334 0.6559 -0.0065 21 7 3.6334 -0.6525 -0.0007 22 7 2.3026 -1.0900 -0.0005 23 6 1.8538 -2.4846 -0.0003 24 1 -0.3634 0.0858 -1.0242 25 1 -0.3634 -0.9297 0.4378 26 1 -0.3634 0.8440 0.5862 27 1 1.3352 2.7454 0.9399 28 1 1.1561 2.6884 -0.8300 29 1 3.1625 4.8938 1.3316 30 1 3.5861 3.2485 1.8624 31 1 4.7040 4.1637 0.8226 32 1 3.4694 6.4316 -1.3941 33 1 4.1082 5.8586 0.1653 34 1 5.1911 6.6551 -1.0011 35 1 7.4900 6.7911 -2.7333 36 1 4.5084 1.2891 -0.0122 37 1 1.7419 -2.8304 -1.0279 38 1 2.5900 -3.1031 0.5131 39 1 0.8957 -2.5579 0.5141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597588244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:21 Heat of formation + Delta-G solvation = 24.068296 kcal Electronic energy + Delta-G solvation = -20543.389032 eV Core-core repulsion = 17487.333262 eV Total energy + Delta-G solvation = -3056.055770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30577 -40.60218 -36.55546 -35.84086 -34.31156 -33.54333 -32.27215 -29.40963 -27.61938 -27.48322 -27.01832 -26.13692 -23.70560 -21.85598 -20.49645 -19.89616 -18.35168 -17.55071 -17.44864 -16.80030 -16.56592 -16.34439 -15.81523 -15.21761 -14.85048 -14.74402 -14.27196 -14.15672 -13.95831 -13.59358 -13.48516 -13.45548 -13.17714 -13.01689 -12.93773 -12.86230 -12.73850 -12.64432 -12.16781 -12.12346 -11.97888 -11.60427 -10.98202 -10.56636 -10.19040 -10.17045 -9.51589 -9.17768 -8.12699 -6.22354 0.89079 1.39904 1.41664 1.50161 1.67539 1.78057 2.02218 2.29232 2.49401 3.16432 3.64857 3.81379 4.15387 4.20691 4.34225 4.38120 4.43036 4.50426 4.54451 4.62503 4.68774 4.78691 4.80608 4.82081 4.98791 5.03880 5.06490 5.10048 5.15323 5.18557 5.53911 5.63278 5.75731 5.83914 6.01059 6.20416 6.26501 6.66743 6.72030 6.86254 7.43352 7.59880 8.92712 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.004970 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.178195 B = 5632.707074 C = 6019.669265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.089 3.911 3 C -0.268 4.268 4 C 0.200 3.800 5 N -0.617 5.617 6 C 0.078 3.922 7 C 0.520 3.480 8 O -0.586 6.586 9 C 0.028 3.972 10 H 0.037 0.963 11 C -0.128 4.128 12 C -0.529 4.529 13 H 0.043 0.957 14 C 0.021 3.979 15 N -0.909 5.909 16 Si 0.952 3.048 17 H -0.276 1.276 18 H -0.272 1.272 19 H -0.280 1.280 20 C 0.051 3.949 21 N -0.340 5.340 22 N -0.378 5.378 23 C 0.092 3.908 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.264 0.736 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.220 -11.571 12.020 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C -0.281 4.281 4 C 0.077 3.923 5 N -0.349 5.349 6 C -0.063 4.063 7 C 0.311 3.689 8 O -0.466 6.466 9 C 0.007 3.993 10 H 0.055 0.945 11 C -0.186 4.186 12 C -0.567 4.567 13 H 0.062 0.938 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.778 3.222 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.206 1.206 20 C -0.134 4.134 21 N -0.162 5.162 22 N -0.162 5.162 23 C -0.048 4.048 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.178 0.822 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.661 -12.906 11.546 21.452 hybrid contribution 0.449 0.877 -1.294 1.626 sum -12.212 -12.029 10.252 19.974 Atomic orbital electron populations 1.20619 0.83816 1.05714 1.04338 1.21365 0.96311 0.86046 1.00309 1.20502 0.92551 0.96990 1.18022 1.19593 0.87056 0.83094 1.02574 1.47879 1.32317 1.48477 1.06275 1.22083 0.98189 0.99550 0.86519 1.21564 0.85136 0.80054 0.82121 1.90490 1.60765 1.55563 1.39785 1.18732 0.90670 0.92960 0.96919 0.94532 1.21799 1.00645 0.97715 0.98450 1.21267 1.14165 1.28841 0.92437 0.93825 1.25551 0.95616 0.95186 1.01463 1.69938 1.19325 1.31649 1.33941 0.85716 0.77766 0.77878 0.80884 1.20103 1.19708 1.20602 1.23539 0.98398 0.91847 0.99604 1.77245 0.98749 1.13116 1.27085 1.48776 1.03030 1.07559 1.56811 1.22185 1.02500 0.75769 1.04335 0.89774 0.88407 0.88038 0.86675 0.91709 0.90700 0.89349 0.91517 0.96344 0.91340 0.91405 0.92645 0.82243 0.90227 0.89076 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.91 71.24 0.71 -0.51 16 2 C 0.09 2.23 6.93 41.40 0.29 2.52 16 3 C -0.27 -8.41 6.03 -20.15 -0.12 -8.53 16 4 C 0.20 5.92 5.52 85.63 0.47 6.39 16 5 N -0.62 -21.76 2.16 -851.16 -1.84 -23.60 16 6 C 0.08 2.14 8.78 127.77 1.12 3.26 16 7 C 0.52 24.83 6.99 87.66 0.61 25.45 16 8 O -0.59 -32.70 15.10 -3.04 -0.05 -32.75 16 9 C 0.03 1.46 1.83 -12.29 -0.02 1.44 16 10 H 0.04 1.98 7.41 -2.38 -0.02 1.96 16 11 C -0.13 -5.92 8.58 71.98 0.62 -5.31 16 12 C -0.53 -31.71 8.37 25.60 0.21 -31.50 16 13 H 0.04 2.81 6.75 -2.91 -0.02 2.80 16 14 C 0.02 1.21 5.30 84.65 0.45 1.65 16 15 N -0.91 -52.06 11.32 21.45 0.24 -51.82 16 16 Si 0.95 46.31 29.54 68.60 2.03 48.33 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 20 C 0.05 1.85 11.29 85.24 0.96 2.81 16 21 N -0.34 -12.00 12.58 -57.02 -0.72 -12.72 16 22 N -0.38 -10.10 4.01 -356.04 -1.43 -11.52 16 23 C 0.09 1.38 11.27 127.77 1.44 2.82 16 24 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.10 0.77 6.95 -2.39 -0.02 0.76 16 26 H 0.10 1.12 8.01 -2.39 -0.02 1.10 16 27 H 0.12 2.39 8.04 -2.39 -0.02 2.37 16 28 H 0.06 2.13 7.54 -2.39 -0.02 2.11 16 29 H 0.07 1.75 7.10 -2.39 -0.02 1.73 16 30 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 31 H 0.07 2.05 5.83 -2.39 -0.01 2.04 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 2.50 4.56 -2.39 -0.01 2.49 16 34 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 35 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 36 H 0.16 6.13 7.86 -2.91 -0.02 6.11 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.12 0.88 6.98 -2.39 -0.02 0.87 16 Total: -1.00 -79.34 318.92 6.02 -73.32 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.05 Total: 10.27 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.74 Total: 0.49 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -3.74 Total: -99.66 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.75 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -79.34 6.02 -73.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597588244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.387 kcal (2) G-P(sol) polarization free energy of solvation -79.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds