Wall clock time and date at job start Mon Mar 30 2020 04:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.89567 * 2 1 4 4 N 1.40088 * 108.20391 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.03954 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92494 * 359.75558 * 4 3 2 7 7 C 1.50703 * 126.12590 * 180.23885 * 6 4 3 8 8 C 1.35319 * 107.74608 * 0.39305 * 6 4 3 9 9 C 1.50698 * 126.03883 * 179.86961 * 8 6 4 10 10 C 1.53000 * 109.47352 * 269.71240 * 9 8 6 11 11 N 1.46497 * 109.47302 * 180.02562 * 10 9 8 12 12 C 1.34774 * 120.00288 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00338 * 179.97438 * 12 11 10 15 15 H 1.09003 * 109.46889 * 300.00448 * 14 12 11 16 16 C 1.53000 * 109.46939 * 59.99981 * 14 12 11 17 17 C 1.50694 * 109.47166 * 179.97438 * 14 12 11 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.09001 * 109.46917 * 269.97156 * 1 2 3 26 26 H 1.09000 * 109.47188 * 29.97364 * 1 2 3 27 27 H 1.09007 * 109.46857 * 149.97341 * 1 2 3 28 28 H 1.09006 * 109.47003 * 270.17701 * 7 6 4 29 29 H 1.08989 * 109.47072 * 30.18247 * 7 6 4 30 30 H 1.09002 * 109.46661 * 150.18167 * 7 6 4 31 31 H 1.09002 * 109.46875 * 149.71636 * 9 8 6 32 32 H 1.08998 * 109.46890 * 29.71438 * 9 8 6 33 33 H 1.09002 * 109.46807 * 60.00354 * 10 9 8 34 34 H 1.09000 * 109.46966 * 300.00376 * 10 9 8 35 35 H 0.97006 * 119.99461 * 0.02562 * 11 10 9 36 36 H 1.09000 * 109.47156 * 59.99760 * 16 14 12 37 37 H 1.08997 * 109.47359 * 180.02562 * 16 14 12 38 38 H 1.09007 * 109.47356 * 300.00035 * 16 14 12 39 39 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0004 6 6 3.6143 -0.7153 0.0045 7 6 4.8351 -1.5988 0.0109 8 6 2.3272 -1.1330 -0.0006 9 6 1.8600 -2.5658 -0.0004 10 6 1.7015 -3.0508 -1.4428 11 7 1.2468 -4.4434 -1.4426 12 6 1.0380 -5.0843 -2.6096 13 8 1.2260 -4.5080 -3.6600 14 6 0.5708 -6.5170 -2.6094 15 1 1.3042 -7.1383 -2.0953 16 6 -0.7751 -6.6145 -1.8883 17 6 0.4145 -6.9947 -4.0301 18 1 0.6322 -6.3277 -4.8512 19 6 -0.0063 -8.2834 -4.2819 20 7 -0.2709 -9.0958 -3.2821 21 14 -0.2006 -8.8751 -6.0429 22 1 -1.5831 -8.5976 -6.5088 23 1 0.7678 -8.1625 -6.9144 24 1 0.0589 -10.3360 -6.1056 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5143 28 1 5.1339 -1.8131 -1.0152 29 1 5.6489 -1.0902 0.5277 30 1 4.6054 -2.5322 0.5249 31 1 0.9013 -2.6352 0.5137 32 1 2.5937 -3.1870 0.5133 33 1 2.6602 -2.9813 -1.9568 34 1 0.9679 -2.4294 -1.9565 35 1 1.0960 -4.9042 -0.6024 36 1 -1.5085 -5.9932 -2.4022 37 1 -1.1129 -7.6508 -1.8877 38 1 -0.6626 -6.2688 -0.8606 39 1 -0.5674 -10.0023 -3.4592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597736072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:16 Heat of formation + Delta-G solvation = -14.161076 kcal Electronic energy + Delta-G solvation = -19716.347376 eV Core-core repulsion = 16658.633855 eV Total energy + Delta-G solvation = -3057.713520 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.33283 -40.45330 -36.50121 -35.70603 -34.34111 -33.73798 -32.36035 -30.27220 -28.65260 -27.56581 -27.12874 -24.84342 -23.32998 -21.26647 -21.03426 -20.09442 -18.32318 -18.25038 -17.63415 -16.82380 -16.38579 -16.27345 -15.86809 -15.25673 -14.70117 -14.67045 -14.36460 -14.13633 -14.00008 -13.77500 -13.38945 -13.24422 -13.19527 -12.93729 -12.85524 -12.71620 -12.65997 -12.52858 -12.23005 -12.09393 -11.98420 -11.42823 -10.99299 -10.57072 -10.26674 -10.19730 -9.88072 -9.33425 -8.11928 -6.21691 0.88784 1.42302 1.43113 1.54883 1.67449 1.97282 2.00907 2.41790 2.64535 3.17563 3.74494 3.76035 4.11609 4.21199 4.25765 4.46290 4.49227 4.52638 4.68250 4.75439 4.80080 4.81587 4.84559 5.01189 5.02210 5.08041 5.13562 5.16241 5.21759 5.36730 5.55893 5.67690 5.74719 5.80756 6.00096 6.27438 6.44145 6.73270 6.81174 6.93827 7.44154 7.63210 8.93702 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035072 B = 0.003610 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.163957 B = 7754.473570 C = 7926.576216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.074 3.926 3 N -0.333 5.333 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.100 3.900 7 C -0.095 4.095 8 C -0.254 4.254 9 C -0.034 4.034 10 C 0.131 3.869 11 N -0.722 5.722 12 C 0.519 3.481 13 O -0.593 6.593 14 C 0.023 3.977 15 H 0.044 0.956 16 C -0.119 4.119 17 C -0.529 4.529 18 H 0.046 0.954 19 C 0.020 3.980 20 N -0.910 5.910 21 Si 0.953 3.047 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.274 1.274 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.412 0.588 36 H 0.020 0.980 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 14.447 13.160 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 N -0.157 5.157 4 N -0.184 5.184 5 H 0.295 0.705 6 C -0.030 4.030 7 C -0.153 4.153 8 C -0.266 4.266 9 C -0.073 4.073 10 C 0.007 3.993 11 N -0.376 5.376 12 C 0.308 3.692 13 O -0.473 6.473 14 C 0.002 3.998 15 H 0.062 0.938 16 C -0.177 4.177 17 C -0.568 4.568 18 H 0.064 0.936 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.779 3.221 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.199 1.199 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.249 0.751 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.108 15.965 12.457 21.461 hybrid contribution 0.221 -0.953 -0.858 1.302 sum 7.329 15.012 11.599 20.337 Atomic orbital electron populations 1.20297 0.85551 1.03681 1.04030 1.22672 0.98042 0.90363 0.98092 1.77210 0.87645 1.23248 1.27629 1.46180 1.07108 1.05238 1.59831 0.70549 1.21403 0.97768 0.85083 0.98699 1.20635 0.92032 0.98421 1.04257 1.19697 0.91797 0.96013 1.19085 1.19932 1.03188 0.90390 0.93783 1.21235 0.98407 0.81356 0.98299 1.45983 1.69353 1.13712 1.08542 1.21551 0.74763 0.89910 0.82954 1.90508 1.53417 1.69625 1.33777 1.18821 0.96083 0.87554 0.97386 0.93815 1.21555 0.96250 1.02856 0.97056 1.21309 1.45317 0.97582 0.92561 0.93595 1.25565 0.94903 0.96510 1.00890 1.69945 1.46420 1.06952 1.31643 0.85637 0.78403 0.77453 0.80631 1.20059 1.20504 1.19902 0.88808 0.90906 0.90014 0.89816 0.88780 0.88431 0.89236 0.88806 0.93600 0.93990 0.75122 0.96033 0.91198 0.92530 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.12 71.24 0.72 -0.73 16 2 C 0.07 1.76 7.22 43.10 0.31 2.07 16 3 N -0.33 -8.37 12.70 -47.38 -0.60 -8.97 16 4 N -0.47 -9.09 7.36 -48.00 -0.35 -9.44 16 5 H 0.45 5.59 8.96 -213.33 -1.91 3.68 16 6 C 0.10 1.87 7.21 41.41 0.30 2.17 16 7 C -0.10 -1.12 10.22 71.24 0.73 -0.40 16 8 C -0.25 -5.53 5.35 -20.14 -0.11 -5.64 16 9 C -0.03 -0.67 5.27 29.85 0.16 -0.52 16 10 C 0.13 3.73 5.66 86.38 0.49 4.22 16 11 N -0.72 -23.57 5.45 -463.07 -2.52 -26.09 16 12 C 0.52 23.78 7.15 87.66 0.63 24.41 16 13 O -0.59 -32.29 15.46 -3.03 -0.05 -32.34 16 14 C 0.02 1.14 2.64 -12.29 -0.03 1.10 16 15 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 16 C -0.12 -5.33 8.86 71.98 0.64 -4.69 16 17 C -0.53 -30.86 8.37 25.60 0.21 -30.65 16 18 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16 19 C 0.02 1.14 5.30 84.66 0.45 1.59 16 20 N -0.91 -50.91 11.32 21.45 0.24 -50.66 16 21 Si 0.95 45.11 29.54 68.60 2.03 47.14 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.52 7.92 -2.38 -0.02 1.50 16 28 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 1.02 7.14 -2.39 -0.02 1.00 16 31 H 0.09 1.55 7.92 -2.39 -0.02 1.53 16 32 H 0.09 1.47 7.14 -2.39 -0.02 1.46 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.41 10.68 7.89 -92.70 -0.73 9.95 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 38 H 0.06 1.98 7.56 -2.38 -0.02 1.96 16 39 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -74.49 327.31 1.66 -72.82 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -1.57 Total: 14.59 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 4.49 Total: -7.05 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.23 Total: -95.17 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.05 Total: -32.34 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -74.49 1.66 -72.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597736072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.662 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds