Wall clock time and date at job start Mon Mar 30 2020 05:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47318 * 2 1 4 4 C 1.52997 * 109.47107 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46970 * 180.02562 * 4 3 2 6 6 C 1.35124 * 125.55015 * 84.99560 * 5 4 3 7 7 C 1.40984 * 108.23887 * 179.73769 * 6 5 4 8 8 N 1.33306 * 126.35497 * 180.02562 * 7 6 5 9 9 C 1.32904 * 119.99651 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00263 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99908 * 179.97438 * 9 8 7 12 12 H 1.08996 * 109.47026 * 59.99787 * 11 9 8 13 13 C 1.53006 * 109.46679 * 299.99835 * 11 9 8 14 14 C 1.50694 * 109.47170 * 179.97438 * 11 9 8 15 15 H 1.07998 * 120.00212 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99993 * 179.97438 * 14 11 9 17 17 N 1.31508 * 119.99768 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99939 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47259 * 60.00090 * 18 16 14 20 20 H 1.48498 * 109.47307 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47370 * 300.00310 * 18 16 14 22 22 N 1.37278 * 107.28475 * 0.02562 * 7 6 5 23 23 H 0.97003 * 126.35142 * 180.02562 * 22 7 6 24 24 N 1.36327 * 125.54804 * 264.69569 * 5 4 3 25 25 H 0.97008 * 125.86901 * 0.27823 * 24 5 4 26 26 H 1.08992 * 109.47364 * 59.99777 * 1 2 3 27 27 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46777 * 299.99842 * 1 2 3 29 29 H 1.09000 * 109.47229 * 239.99977 * 2 1 3 30 30 H 1.08996 * 109.47348 * 119.99723 * 2 1 3 31 31 H 1.09000 * 109.46990 * 59.99830 * 3 2 1 32 32 H 1.08996 * 109.46685 * 300.00129 * 3 2 1 33 33 H 1.08996 * 109.47148 * 60.00061 * 4 3 2 34 34 H 1.09004 * 109.46879 * 299.99705 * 4 3 2 35 35 H 1.08002 * 125.87920 * 359.77192 * 6 5 4 36 36 H 1.08999 * 109.47103 * 299.99300 * 13 11 9 37 37 H 1.09000 * 109.47548 * 60.00094 * 13 11 9 38 38 H 1.08999 * 109.46422 * 180.02562 * 13 11 9 39 39 H 0.97005 * 119.99862 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8634 0.0000 6 6 4.2443 3.6354 1.0956 7 6 4.7331 4.8904 0.6787 8 7 5.0287 5.9245 1.4662 9 6 5.4831 7.0552 0.9357 10 8 5.6297 7.1461 -0.2679 11 6 5.8167 8.2245 1.8259 12 1 6.5946 7.9335 2.5317 13 6 4.5652 8.6537 2.5944 14 6 6.3079 9.3733 0.9832 15 1 6.3725 9.2671 -0.0896 16 6 6.6749 10.5599 1.5819 17 7 6.5958 10.6893 2.8882 18 14 7.2831 11.9840 0.5372 19 1 6.2234 12.3802 -0.4248 20 1 7.6108 13.1367 1.4143 21 1 8.4979 11.5676 -0.2084 22 7 4.8481 4.8496 -0.6886 23 1 5.1598 5.5680 -1.2610 24 7 4.4328 3.5771 -1.1042 25 1 4.4059 3.2591 -2.0203 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 4.0426 3.3414 2.1151 36 1 3.7874 8.9448 1.8886 37 1 4.2103 7.8227 3.2040 38 1 4.8065 9.4997 3.2379 39 1 6.8543 11.5240 3.3094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597841656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:47 Heat of formation + Delta-G solvation = 38.922555 kcal Electronic energy + Delta-G solvation = -19462.090393 eV Core-core repulsion = 16406.678751 eV Total energy + Delta-G solvation = -3055.411641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32452 -38.30300 -36.31138 -33.73628 -33.21058 -32.39442 -30.44976 -29.46872 -28.99624 -24.91266 -24.79110 -23.16506 -21.59875 -20.82394 -20.78051 -18.99368 -17.64860 -16.13716 -15.97818 -15.30569 -15.23577 -15.03238 -14.69720 -14.22101 -13.96525 -13.63518 -13.29997 -13.22885 -13.00967 -12.50984 -12.25699 -11.76755 -11.70387 -11.43415 -11.32669 -10.99524 -10.86652 -10.60822 -10.44955 -10.40614 -9.93305 -9.84575 -9.37714 -9.23315 -8.64963 -8.25786 -7.99868 -7.28316 -5.81263 -3.84068 1.31641 1.87838 2.68443 3.45534 3.47565 3.52813 4.00494 4.17661 4.46751 4.52098 4.58467 4.67285 4.72436 4.81859 5.11262 5.18890 5.25993 5.35685 5.42690 5.48283 5.50580 5.55478 5.74102 5.79878 5.92789 5.99508 6.15481 6.55350 6.94008 7.08840 7.18495 7.39086 7.40527 7.83630 7.95780 8.08393 8.30368 8.43181 8.60740 9.21809 9.68694 9.79762 11.26064 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.045831 B = 0.003324 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.790179 B = 8420.990769 C = 8698.958792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.060 4.060 5 C 0.169 3.831 6 C -0.261 4.261 7 C 0.469 3.531 8 N -0.638 5.638 9 C 0.495 3.505 10 O -0.596 6.596 11 C 0.046 3.954 12 H 0.052 0.948 13 C -0.121 4.121 14 C -0.501 4.501 15 H 0.068 0.932 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.279 1.279 22 N -0.493 5.493 23 H 0.453 0.547 24 N -0.499 5.499 25 H 0.438 0.562 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.166 0.834 36 H 0.019 0.981 37 H 0.024 0.976 38 H 0.086 0.914 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 -24.333 -6.667 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.099 4.099 5 C 0.048 3.952 6 C -0.293 4.293 7 C 0.215 3.785 8 N -0.396 5.396 9 C 0.287 3.713 10 O -0.477 6.477 11 C 0.026 3.974 12 H 0.070 0.930 13 C -0.179 4.179 14 C -0.539 4.539 15 H 0.086 0.914 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.204 1.204 22 N -0.236 5.236 23 H 0.312 0.688 24 N -0.217 5.217 25 H 0.282 0.718 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.184 0.816 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.104 0.896 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.843 -23.747 -6.684 26.561 hybrid contribution 0.610 1.179 -1.964 2.370 sum -9.232 -22.568 -8.648 25.872 Atomic orbital electron populations 1.21776 0.95663 1.01676 1.02109 1.21530 0.96152 0.96230 1.02246 1.21655 0.93002 0.97477 1.03494 1.20469 0.96433 0.88306 1.04731 1.20927 0.94272 0.94077 0.85935 1.20554 1.16815 0.92367 0.99516 1.21137 0.85295 0.94468 0.77568 1.70217 1.35728 1.01953 1.31727 1.22564 0.73021 0.87812 0.87905 1.90161 1.53262 1.85110 1.19197 1.18488 0.95839 0.89270 0.93849 0.93021 1.21570 0.96123 1.00934 0.99305 1.21206 1.41899 0.96546 0.94286 0.91368 1.24949 0.95974 0.98485 0.94952 1.69899 1.49025 1.26101 1.08559 0.86583 0.79204 0.81629 0.80067 1.20454 1.21414 1.20443 1.47476 1.62988 1.04273 1.08903 0.68782 1.44137 1.63804 1.05377 1.08412 0.71760 0.92779 0.92730 0.92431 0.92016 0.91539 0.90517 0.91725 0.90183 0.87985 0.81614 0.96139 0.95733 0.89572 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.52 5.93 -26.73 -0.16 -0.67 16 3 C -0.12 -0.60 5.20 -26.73 -0.14 -0.74 16 4 C -0.06 -0.30 5.74 -27.88 -0.16 -0.46 16 5 C 0.17 1.57 6.44 -81.70 -0.53 1.04 16 6 C -0.26 -3.46 10.71 -39.65 -0.42 -3.89 16 7 C 0.47 8.68 7.72 -155.19 -1.20 7.48 16 8 N -0.64 -14.86 10.31 -11.59 -0.12 -14.98 16 9 C 0.50 13.29 7.03 -11.81 -0.08 13.20 16 10 O -0.60 -16.21 12.81 5.28 0.07 -16.15 16 11 C 0.05 1.35 2.71 -92.92 -0.25 1.10 16 12 H 0.05 1.59 8.14 -51.93 -0.42 1.17 16 13 C -0.12 -3.32 8.88 37.16 0.33 -2.99 16 14 C -0.50 -15.59 8.38 -34.44 -0.29 -15.88 16 15 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 17 N -0.90 -27.39 11.32 55.43 0.63 -26.76 16 18 Si 0.90 23.20 29.54 -169.99 -5.02 18.18 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 22 N -0.49 -7.85 7.04 31.32 0.22 -7.63 16 23 H 0.45 8.00 6.36 -182.55 -1.16 6.84 16 24 N -0.50 -4.99 7.40 33.68 0.25 -4.74 16 25 H 0.44 2.62 8.96 -182.54 -1.64 0.99 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.60 8.05 -51.93 -0.42 0.19 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -37.41 325.80 -9.79 -47.20 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.09 Total: 0.53 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.63 Total: -0.56 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.98 Total: -54.10 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.07 Total: -16.15 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.41 -9.79 -47.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597841656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.118 kcal (2) G-P(sol) polarization free energy of solvation -37.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds