Wall clock time and date at job start Mon Mar 30 2020 05:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47318 * 2 1 4 4 C 1.52997 * 109.47107 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46970 * 180.02562 * 4 3 2 6 6 C 1.35124 * 125.55015 * 84.99560 * 5 4 3 7 7 C 1.40984 * 108.23887 * 179.73769 * 6 5 4 8 8 N 1.33306 * 126.35497 * 180.02562 * 7 6 5 9 9 C 1.32904 * 119.99651 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00263 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99908 * 179.97438 * 9 8 7 12 12 H 1.08996 * 109.47026 * 59.99787 * 11 9 8 13 13 C 1.53006 * 109.46679 * 299.99835 * 11 9 8 14 14 C 1.50694 * 109.47170 * 179.97438 * 11 9 8 15 15 H 1.07998 * 120.00212 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99993 * 179.97438 * 14 11 9 17 17 N 1.31508 * 119.99768 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99939 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47259 * 60.00090 * 18 16 14 20 20 H 1.48498 * 109.47307 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47370 * 300.00310 * 18 16 14 22 22 N 1.37278 * 107.28475 * 0.02562 * 7 6 5 23 23 H 0.97003 * 126.35142 * 180.02562 * 22 7 6 24 24 N 1.36327 * 125.54804 * 264.69569 * 5 4 3 25 25 H 0.97008 * 125.86901 * 0.27823 * 24 5 4 26 26 H 1.08992 * 109.47364 * 59.99777 * 1 2 3 27 27 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46777 * 299.99842 * 1 2 3 29 29 H 1.09000 * 109.47229 * 239.99977 * 2 1 3 30 30 H 1.08996 * 109.47348 * 119.99723 * 2 1 3 31 31 H 1.09000 * 109.46990 * 59.99830 * 3 2 1 32 32 H 1.08996 * 109.46685 * 300.00129 * 3 2 1 33 33 H 1.08996 * 109.47148 * 60.00061 * 4 3 2 34 34 H 1.09004 * 109.46879 * 299.99705 * 4 3 2 35 35 H 1.08002 * 125.87920 * 359.77192 * 6 5 4 36 36 H 1.08999 * 109.47103 * 299.99300 * 13 11 9 37 37 H 1.09000 * 109.47548 * 60.00094 * 13 11 9 38 38 H 1.08999 * 109.46422 * 180.02562 * 13 11 9 39 39 H 0.97005 * 119.99862 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8634 0.0000 6 6 4.2443 3.6354 1.0956 7 6 4.7331 4.8904 0.6787 8 7 5.0287 5.9245 1.4662 9 6 5.4831 7.0552 0.9357 10 8 5.6297 7.1461 -0.2679 11 6 5.8167 8.2245 1.8259 12 1 6.5946 7.9335 2.5317 13 6 4.5652 8.6537 2.5944 14 6 6.3079 9.3733 0.9832 15 1 6.3725 9.2671 -0.0896 16 6 6.6749 10.5599 1.5819 17 7 6.5958 10.6893 2.8882 18 14 7.2831 11.9840 0.5372 19 1 6.2234 12.3802 -0.4248 20 1 7.6108 13.1367 1.4143 21 1 8.4979 11.5676 -0.2084 22 7 4.8481 4.8496 -0.6886 23 1 5.1598 5.5680 -1.2610 24 7 4.4328 3.5771 -1.1042 25 1 4.4059 3.2591 -2.0203 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 4.0426 3.3414 2.1151 36 1 3.7874 8.9448 1.8886 37 1 4.2103 7.8227 3.2040 38 1 4.8065 9.4997 3.2379 39 1 6.8543 11.5240 3.3094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597841656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:46 Heat of formation + Delta-G solvation = 11.771005 kcal Electronic energy + Delta-G solvation = -19463.267772 eV Core-core repulsion = 16406.678751 eV Total energy + Delta-G solvation = -3056.589021 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.54597 -40.07527 -36.86217 -35.77565 -34.80605 -33.30405 -32.53677 -30.68518 -30.01047 -27.18671 -25.52080 -24.91618 -22.46146 -22.00770 -21.79495 -20.27056 -19.16649 -18.31656 -17.11535 -16.89600 -16.49898 -16.43753 -15.87692 -15.62902 -15.28453 -14.59352 -14.52800 -14.37339 -14.22340 -13.73667 -13.56376 -13.09053 -12.97827 -12.67517 -12.58909 -12.28298 -12.13571 -12.07707 -12.06360 -11.76632 -11.67128 -11.32152 -11.14448 -10.88506 -10.51592 -10.46694 -9.92490 -8.69359 -8.11003 -6.23750 0.10806 0.75622 1.34607 1.36893 1.41270 1.49598 2.42379 2.87740 2.94596 3.16879 3.29542 3.76833 4.09403 4.11029 4.28593 4.38309 4.45359 4.70052 4.80777 4.82221 4.85544 4.92321 5.03951 5.09763 5.14260 5.17772 5.22311 5.26982 5.38892 5.46575 5.52123 5.60099 5.66134 5.75782 5.92612 6.10935 6.34996 6.52530 6.83140 6.83504 7.42420 7.91513 8.95559 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.045831 B = 0.003324 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.790179 B = 8420.990769 C = 8698.958792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.117 4.117 4 C -0.054 4.054 5 C 0.216 3.784 6 C -0.287 4.287 7 C 0.443 3.557 8 N -0.675 5.675 9 C 0.487 3.513 10 O -0.627 6.627 11 C 0.039 3.961 12 H 0.020 0.980 13 C -0.103 4.103 14 C -0.531 4.531 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.916 5.916 18 Si 0.966 3.034 19 H -0.274 1.274 20 H -0.271 1.271 21 H -0.274 1.274 22 N -0.501 5.501 23 H 0.448 0.552 24 N -0.464 5.464 25 H 0.462 0.538 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.181 0.819 36 H 0.013 0.987 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 -27.101 -8.177 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.157 4.157 3 C -0.155 4.155 4 C -0.093 4.093 5 C 0.092 3.908 6 C -0.318 4.318 7 C 0.194 3.806 8 N -0.438 5.438 9 C 0.277 3.723 10 O -0.512 6.512 11 C 0.019 3.981 12 H 0.038 0.962 13 C -0.161 4.161 14 C -0.569 4.569 15 H 0.067 0.933 16 C -0.187 4.187 17 N -0.556 5.556 18 Si 0.790 3.210 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.200 1.200 22 N -0.238 5.238 23 H 0.304 0.696 24 N -0.184 5.184 25 H 0.312 0.688 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.199 0.801 36 H 0.032 0.968 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.575 -26.597 -8.248 29.787 hybrid contribution 0.711 1.686 -1.623 2.445 sum -9.864 -24.911 -9.871 28.554 Atomic orbital electron populations 1.21813 0.96433 1.01827 1.01608 1.21500 0.95446 0.95514 1.03267 1.21630 0.92758 0.98181 1.02947 1.20756 0.96192 0.84802 1.07564 1.21697 0.89982 0.95147 0.83996 1.20771 1.18551 0.90763 1.01673 1.21530 0.85615 0.95093 0.78401 1.70021 1.38692 1.02153 1.32888 1.22125 0.74268 0.88616 0.87285 1.90115 1.55807 1.85785 1.19519 1.18399 0.95415 0.90519 0.93795 0.96179 1.21346 0.95394 1.00630 0.98701 1.21339 1.43712 0.98208 0.93655 0.93267 1.25785 0.95637 1.00929 0.96384 1.70011 1.48735 1.26979 1.09863 0.85517 0.78643 0.78295 0.78532 1.19951 1.19612 1.19976 1.47383 1.61543 1.06301 1.08558 0.69606 1.44411 1.60994 1.02762 1.10231 0.68845 0.93114 0.92300 0.93174 0.90705 0.90798 0.91662 0.91925 0.86763 0.85806 0.80117 0.96756 0.94093 0.91392 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.91 71.98 0.71 -0.39 16 2 C -0.12 -0.52 5.93 30.60 0.18 -0.34 16 3 C -0.12 -0.70 5.20 30.60 0.16 -0.55 16 4 C -0.05 -0.24 5.74 29.85 0.17 -0.07 16 5 C 0.22 3.19 6.44 41.15 0.26 3.45 16 6 C -0.29 -7.08 10.71 22.23 0.24 -6.84 16 7 C 0.44 16.48 7.72 133.83 1.03 17.51 16 8 N -0.68 -32.84 10.31 -309.88 -3.19 -36.03 16 9 C 0.49 27.61 7.03 87.95 0.62 28.23 16 10 O -0.63 -36.03 12.81 -4.01 -0.05 -36.08 16 11 C 0.04 2.44 2.71 -12.28 -0.03 2.41 16 12 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 13 C -0.10 -5.89 8.88 71.98 0.64 -5.26 16 14 C -0.53 -34.63 8.38 25.60 0.21 -34.42 16 15 H 0.05 3.32 6.75 -2.91 -0.02 3.30 16 16 C 0.01 0.67 5.30 84.66 0.45 1.12 16 17 N -0.92 -57.41 11.32 21.45 0.24 -57.16 16 18 Si 0.97 48.46 29.54 68.60 2.03 50.49 16 19 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -13.50 7.11 99.48 0.71 -12.80 16 22 N -0.50 -15.62 7.04 -54.81 -0.39 -16.01 16 23 H 0.45 16.03 6.36 -213.28 -1.36 14.67 16 24 N -0.46 -7.70 7.40 -47.36 -0.35 -8.05 16 25 H 0.46 3.43 8.96 -213.27 -1.91 1.52 16 26 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.04 2.13 8.05 -2.39 -0.02 2.11 16 38 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 39 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -87.51 325.80 0.73 -86.78 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -2.21 Total: 11.20 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 4.65 Total: 4.87 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -3.69 Total: -117.26 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.05 Total: -36.08 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -87.51 0.73 -86.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597841656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.550 kcal (2) G-P(sol) polarization free energy of solvation -87.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds