Wall clock time and date at job start Mon Mar 30 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.49443 * 2 1 4 4 C 1.53094 * 109.48633 * 239.96364 * 2 1 3 5 5 C 1.53168 * 109.16604 * 182.40778 * 4 2 1 6 6 H 1.09002 * 109.54912 * 297.03009 * 5 4 2 7 7 N 1.46504 * 109.54428 * 176.85032 * 5 4 2 8 8 C 1.35307 * 125.86774 * 275.18049 * 7 5 4 9 9 C 1.35350 * 106.17738 * 180.02562 * 8 7 5 10 10 C 1.50702 * 126.75487 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46946 * 125.01232 * 10 9 8 12 12 H 1.07998 * 120.00285 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99646 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00202 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47089 * 89.99781 * 15 13 11 17 17 H 1.48495 * 109.47116 * 210.00072 * 15 13 11 18 18 H 1.48503 * 109.46923 * 330.00440 * 15 13 11 19 19 N 1.33771 * 106.49501 * 359.97438 * 9 8 7 20 20 N 1.28634 * 108.88748 * 0.02562 * 19 9 8 21 21 C 1.53180 * 109.10983 * 56.93941 * 5 4 2 22 22 C 1.53099 * 109.15761 * 303.15396 * 21 5 4 23 23 H 1.09003 * 109.40628 * 297.48965 * 22 21 5 24 24 C 1.52995 * 109.49361 * 177.50872 * 22 21 5 25 25 O 1.42902 * 109.48991 * 57.46882 * 22 21 5 26 26 H 1.09002 * 109.47400 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47481 * 300.03619 * 1 2 3 28 28 H 1.09002 * 109.46694 * 60.03419 * 1 2 3 29 29 H 1.09005 * 109.51479 * 62.50201 * 4 2 1 30 30 H 1.08994 * 109.57361 * 302.35511 * 4 2 1 31 31 H 1.08003 * 126.91448 * 359.97115 * 8 7 5 32 32 H 1.08998 * 109.47112 * 245.01131 * 10 9 8 33 33 H 1.09000 * 109.46673 * 5.01643 * 10 9 8 34 34 H 0.97005 * 119.99992 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.52003 * 62.97030 * 21 5 4 36 36 H 1.09002 * 109.52243 * 183.15466 * 21 5 4 37 37 H 1.09002 * 109.46838 * 299.95645 * 24 22 21 38 38 H 1.08995 * 109.47433 * 59.95875 * 24 22 21 39 39 H 1.09002 * 109.47353 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 3.5711 -0.7710 -1.2120 6 1 3.9691 0.2434 -1.2422 7 7 4.0659 -1.5261 -2.3658 8 6 4.1970 -2.8710 -2.4359 9 6 4.6848 -3.1385 -3.6699 10 6 5.0059 -4.4970 -4.2377 11 6 4.2643 -4.6869 -5.5358 12 1 3.6249 -3.9022 -5.9122 13 6 4.4031 -5.8621 -6.2434 14 7 5.1822 -6.8174 -5.7852 15 14 3.4845 -6.0973 -7.8529 16 1 4.3239 -5.6113 -8.9775 17 1 3.1849 -7.5388 -8.0457 18 1 2.2146 -5.3284 -7.8149 19 7 4.8258 -1.9596 -4.2863 20 7 4.4508 -1.0242 -3.4868 21 6 4.0195 -1.4588 0.0812 22 6 3.4306 -0.7093 1.2792 23 1 3.8192 0.3090 1.2959 24 6 3.8226 -1.4261 2.5728 25 8 2.0065 -0.6741 1.1665 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5143 0.8896 28 1 -0.3633 0.5133 -0.8903 29 1 1.7149 -0.1845 -2.1398 30 1 1.6443 -1.7375 -1.2719 31 1 3.9609 -3.5870 -1.6626 32 1 6.0783 -4.5713 -4.4176 33 1 4.7018 -5.2678 -3.5295 34 1 5.2801 -7.6441 -6.2833 35 1 3.6645 -2.4894 0.0875 36 1 5.1078 -1.4472 0.1415 37 1 3.4343 -2.4445 2.5558 38 1 4.9088 -1.4528 2.6586 39 1 3.4035 -0.8920 3.4255 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600974039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:18 Heat of formation + Delta-G solvation = 33.582036 kcal Electronic energy + Delta-G solvation = -20174.050044 eV Core-core repulsion = 17118.406820 eV Total energy + Delta-G solvation = -3055.643224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.59504 -39.93670 -35.40672 -34.10721 -33.38895 -31.63845 -30.93921 -29.48263 -27.55427 -26.77528 -24.03537 -23.40801 -22.21315 -21.42814 -20.22750 -20.12651 -16.95795 -16.85802 -16.26240 -16.00693 -15.67607 -15.09538 -14.52620 -14.38672 -14.18206 -13.82282 -13.08762 -12.91489 -12.65957 -12.43354 -12.31777 -12.23605 -12.15735 -11.78878 -11.66302 -11.33239 -11.30090 -10.98784 -10.82863 -10.68806 -10.63302 -10.16721 -9.86358 -9.67935 -9.40890 -9.26574 -8.42891 -8.11739 -5.98005 -3.98471 2.21970 2.69466 3.28711 3.37695 3.42177 3.45367 3.53042 4.09661 4.26600 4.41351 4.52243 4.57362 4.71143 4.76111 4.87197 5.01241 5.05462 5.21001 5.22973 5.32101 5.33276 5.39432 5.50762 5.54825 5.61839 5.70036 5.79811 5.81018 5.86722 5.91532 6.10793 6.34748 6.90844 7.13971 7.20252 7.53937 7.63463 7.99823 8.38540 9.04901 9.31957 9.64298 11.13162 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.004145 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.469784 B = 6753.613289 C = 7031.964987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.094 3.906 3 H 0.063 0.937 4 C -0.162 4.162 5 C 0.151 3.849 6 H 0.106 0.894 7 N -0.299 5.299 8 C -0.080 4.080 9 C 0.035 3.965 10 C 0.092 3.908 11 C -0.503 4.503 12 H 0.059 0.941 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.261 5.261 20 N -0.112 5.112 21 C -0.161 4.161 22 C 0.094 3.906 23 H 0.062 0.938 24 C -0.144 4.144 25 O -0.374 6.374 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 12.838 18.019 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.036 3.964 3 H 0.081 0.919 4 C -0.201 4.201 5 C 0.048 3.952 6 H 0.124 0.876 7 N -0.094 5.094 8 C -0.228 4.228 9 C -0.102 4.102 10 C 0.053 3.947 11 C -0.542 4.542 12 H 0.077 0.923 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.200 1.200 19 N -0.128 5.128 20 N -0.090 5.090 21 C -0.200 4.200 22 C 0.036 3.964 23 H 0.080 0.920 24 C -0.202 4.202 25 O -0.294 6.294 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.195 0.805 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.955 13.882 17.292 22.960 hybrid contribution -0.477 -1.060 -0.460 1.250 sum -6.432 12.821 16.832 22.115 Atomic orbital electron populations 1.21757 0.92348 1.03396 1.02659 1.22029 0.95634 0.94841 0.83899 0.91929 1.22708 0.93525 1.03882 0.99939 1.21451 0.94875 0.96343 0.82527 0.87581 1.47245 1.43790 1.06053 1.12330 1.23246 1.12125 0.85231 1.02239 1.23021 0.99429 0.97446 0.90340 1.17725 0.97923 0.83090 0.95917 1.21042 1.27076 1.00822 1.05217 0.92321 1.24968 0.95558 0.95885 0.97966 1.69947 1.38373 1.06370 1.39133 0.86515 0.80197 0.76982 0.83874 1.20544 1.21277 1.19951 1.75063 1.17095 0.97823 1.22837 1.78195 1.16648 1.23552 0.90566 1.22683 1.02617 1.01800 0.92899 1.22010 0.81247 0.98563 0.94576 0.91967 1.21759 1.01579 1.01371 0.95448 1.87967 1.20606 1.77978 1.42825 0.91480 0.91540 0.90809 0.89550 0.89676 0.80457 0.94330 0.94585 0.92926 0.89317 0.89448 0.91415 0.90791 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.56 37.16 0.36 -0.75 16 2 C 0.09 0.83 3.26 -26.69 -0.09 0.74 16 3 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.16 -1.75 5.03 -26.60 -0.13 -1.88 16 5 C 0.15 1.79 3.21 -67.75 -0.22 1.57 16 6 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 7 N -0.30 -5.09 3.26 -54.58 -0.18 -5.27 16 8 C -0.08 -1.49 10.60 -17.05 -0.18 -1.67 16 9 C 0.03 0.82 6.44 -82.78 -0.53 0.28 16 10 C 0.09 2.45 5.55 -29.04 -0.16 2.28 16 11 C -0.50 -14.70 9.09 -34.44 -0.31 -15.01 16 12 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 15 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 19 N -0.26 -6.35 12.40 33.29 0.41 -5.94 16 20 N -0.11 -2.33 13.17 60.35 0.79 -1.54 16 21 C -0.16 -1.57 4.41 -26.59 -0.12 -1.69 16 22 C 0.09 0.78 3.26 -26.68 -0.09 0.69 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 C -0.14 -1.00 9.57 37.16 0.36 -0.64 16 25 O -0.37 -3.68 10.05 -35.23 -0.35 -4.04 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.18 2.73 7.23 -52.48 -0.38 2.35 16 32 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.95 8.12 -51.93 -0.42 0.52 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 0.91 7.03 -51.93 -0.36 0.55 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -33.40 322.74 -6.17 -39.57 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -6.20 Total: -4.30 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.22 Total: -14.51 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 1.77 Total: -38.86 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.35 Total: -4.04 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.40 -6.17 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600974039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.148 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds