Wall clock time and date at job start Mon Mar 30 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.49443 * 2 1 4 4 C 1.53094 * 109.48633 * 239.96364 * 2 1 3 5 5 C 1.53168 * 109.16604 * 182.40778 * 4 2 1 6 6 H 1.09002 * 109.54912 * 297.03009 * 5 4 2 7 7 N 1.46504 * 109.54428 * 176.85032 * 5 4 2 8 8 C 1.35307 * 125.86774 * 275.18049 * 7 5 4 9 9 C 1.35350 * 106.17738 * 180.02562 * 8 7 5 10 10 C 1.50702 * 126.75487 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46946 * 125.01232 * 10 9 8 12 12 H 1.07998 * 120.00285 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99646 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00202 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47089 * 89.99781 * 15 13 11 17 17 H 1.48495 * 109.47116 * 210.00072 * 15 13 11 18 18 H 1.48503 * 109.46923 * 330.00440 * 15 13 11 19 19 N 1.33771 * 106.49501 * 359.97438 * 9 8 7 20 20 N 1.28634 * 108.88748 * 0.02562 * 19 9 8 21 21 C 1.53180 * 109.10983 * 56.93941 * 5 4 2 22 22 C 1.53099 * 109.15761 * 303.15396 * 21 5 4 23 23 H 1.09003 * 109.40628 * 297.48965 * 22 21 5 24 24 C 1.52995 * 109.49361 * 177.50872 * 22 21 5 25 25 O 1.42902 * 109.48991 * 57.46882 * 22 21 5 26 26 H 1.09002 * 109.47400 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47481 * 300.03619 * 1 2 3 28 28 H 1.09002 * 109.46694 * 60.03419 * 1 2 3 29 29 H 1.09005 * 109.51479 * 62.50201 * 4 2 1 30 30 H 1.08994 * 109.57361 * 302.35511 * 4 2 1 31 31 H 1.08003 * 126.91448 * 359.97115 * 8 7 5 32 32 H 1.08998 * 109.47112 * 245.01131 * 10 9 8 33 33 H 1.09000 * 109.46673 * 5.01643 * 10 9 8 34 34 H 0.97005 * 119.99992 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.52003 * 62.97030 * 21 5 4 36 36 H 1.09002 * 109.52243 * 183.15466 * 21 5 4 37 37 H 1.09002 * 109.46838 * 299.95645 * 24 22 21 38 38 H 1.08995 * 109.47433 * 59.95875 * 24 22 21 39 39 H 1.09002 * 109.47353 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 3.5711 -0.7710 -1.2120 6 1 3.9691 0.2434 -1.2422 7 7 4.0659 -1.5261 -2.3658 8 6 4.1970 -2.8710 -2.4359 9 6 4.6848 -3.1385 -3.6699 10 6 5.0059 -4.4970 -4.2377 11 6 4.2643 -4.6869 -5.5358 12 1 3.6249 -3.9022 -5.9122 13 6 4.4031 -5.8621 -6.2434 14 7 5.1822 -6.8174 -5.7852 15 14 3.4845 -6.0973 -7.8529 16 1 4.3239 -5.6113 -8.9775 17 1 3.1849 -7.5388 -8.0457 18 1 2.2146 -5.3284 -7.8149 19 7 4.8258 -1.9596 -4.2863 20 7 4.4508 -1.0242 -3.4868 21 6 4.0195 -1.4588 0.0812 22 6 3.4306 -0.7093 1.2792 23 1 3.8192 0.3090 1.2959 24 6 3.8226 -1.4261 2.5728 25 8 2.0065 -0.6741 1.1665 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5143 0.8896 28 1 -0.3633 0.5133 -0.8903 29 1 1.7149 -0.1845 -2.1398 30 1 1.6443 -1.7375 -1.2719 31 1 3.9609 -3.5870 -1.6626 32 1 6.0783 -4.5713 -4.4176 33 1 4.7018 -5.2678 -3.5295 34 1 5.2801 -7.6441 -6.2833 35 1 3.6645 -2.4894 0.0875 36 1 5.1078 -1.4472 0.1415 37 1 3.4343 -2.4445 2.5558 38 1 4.9088 -1.4528 2.6586 39 1 3.4035 -0.8920 3.4255 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600974039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:18 Heat of formation + Delta-G solvation = 11.765821 kcal Electronic energy + Delta-G solvation = -20174.996066 eV Core-core repulsion = 17118.406820 eV Total energy + Delta-G solvation = -3056.589246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.16395 -40.73340 -36.61867 -35.40301 -34.76225 -33.21068 -32.42444 -30.31628 -29.45375 -27.55934 -25.49847 -25.15846 -22.92341 -22.61189 -21.70721 -21.26065 -18.51068 -18.07731 -17.69239 -17.15319 -16.75231 -16.50102 -15.89901 -15.70538 -15.30221 -14.69704 -14.53317 -14.27622 -13.76800 -13.65173 -13.62713 -13.03188 -12.94401 -12.93089 -12.83885 -12.70115 -12.58333 -12.47945 -12.23238 -11.96854 -11.93043 -11.72308 -11.54595 -11.34951 -10.84242 -10.62787 -10.59484 -9.90585 -8.20009 -6.28902 0.69320 1.39353 1.41535 1.42816 1.52208 1.72342 2.43502 2.63933 3.12744 3.17272 3.40150 3.62021 3.68183 3.73905 4.03519 4.05256 4.15815 4.24262 4.35017 4.38002 4.42184 4.49412 4.58030 4.71087 4.76764 4.83616 4.86536 4.99585 5.01069 5.13677 5.25921 5.26902 5.34455 5.40883 5.51976 5.75189 5.78721 6.20514 6.24737 6.79031 7.37825 7.66554 8.91061 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.004145 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.469784 B = 6753.613289 C = 7031.964987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.098 3.902 3 H 0.082 0.918 4 C -0.157 4.157 5 C 0.139 3.861 6 H 0.124 0.876 7 N -0.278 5.278 8 C -0.051 4.051 9 C -0.004 4.004 10 C 0.102 3.898 11 C -0.525 4.525 12 H 0.044 0.956 13 C 0.010 3.990 14 N -0.926 5.926 15 Si 0.962 3.038 16 H -0.275 1.275 17 H -0.273 1.273 18 H -0.272 1.272 19 N -0.306 5.306 20 N -0.120 5.120 21 C -0.157 4.157 22 C 0.095 3.905 23 H 0.080 0.920 24 C -0.143 4.143 25 O -0.387 6.387 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.213 0.787 32 H 0.009 0.991 33 H 0.033 0.967 34 H 0.267 0.733 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 13.809 19.447 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.040 3.960 3 H 0.099 0.901 4 C -0.196 4.196 5 C 0.039 3.961 6 H 0.141 0.859 7 N -0.073 5.073 8 C -0.201 4.201 9 C -0.142 4.142 10 C 0.064 3.936 11 C -0.563 4.563 12 H 0.062 0.938 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.201 1.201 17 H -0.198 1.198 18 H -0.196 1.196 19 N -0.173 5.173 20 N -0.097 5.097 21 C -0.195 4.195 22 C 0.037 3.963 23 H 0.098 0.902 24 C -0.200 4.200 25 O -0.307 6.307 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.229 0.771 32 H 0.027 0.973 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.003 14.886 18.740 24.936 hybrid contribution -0.169 -1.297 -0.779 1.522 sum -7.172 13.589 17.961 23.637 Atomic orbital electron populations 1.21778 0.91610 1.03085 1.03648 1.22090 0.96224 0.95228 0.82465 0.90063 1.22695 0.92430 1.03382 1.01077 1.22035 0.95723 0.96892 0.81450 0.85859 1.47662 1.41384 1.05851 1.12437 1.23502 1.09214 0.86382 1.01031 1.22661 1.02788 0.96261 0.92512 1.17391 0.95795 0.85223 0.95226 1.21263 1.27533 1.00810 1.06728 0.93795 1.25786 0.96276 0.95427 1.01378 1.70038 1.39231 1.06823 1.40561 0.85495 0.78865 0.77528 0.79423 1.20074 1.19794 1.19636 1.74975 1.19015 0.98521 1.24759 1.78066 1.17195 1.22923 0.91558 1.22715 1.03139 1.01522 0.92150 1.22142 0.80509 0.99436 0.94209 0.90198 1.21778 1.02508 1.00815 0.94919 1.87975 1.21509 1.78237 1.42931 0.92461 0.90526 0.89878 0.90119 0.91073 0.77072 0.97262 0.94909 0.92440 0.89823 0.88753 0.92175 0.89425 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.56 71.98 0.69 -1.21 16 2 C 0.10 1.47 3.26 30.62 0.10 1.57 16 3 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.16 -3.10 5.03 30.68 0.15 -2.94 16 5 C 0.14 2.99 3.21 45.11 0.14 3.14 16 6 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 7 N -0.28 -9.14 3.26 -326.60 -1.07 -10.21 16 8 C -0.05 -1.87 10.60 83.49 0.89 -0.98 16 9 C 0.00 -0.19 6.44 41.60 0.27 0.07 16 10 C 0.10 5.64 5.55 29.10 0.16 5.80 16 11 C -0.52 -31.51 9.09 25.60 0.23 -31.28 16 12 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 13 C 0.01 0.56 5.46 84.65 0.46 1.03 16 14 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 15 Si 0.96 46.01 29.54 68.60 2.03 48.03 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 19 N -0.31 -15.24 12.40 -48.60 -0.60 -15.84 16 20 N -0.12 -4.96 13.17 37.02 0.49 -4.47 16 21 C -0.16 -2.63 4.41 30.69 0.14 -2.49 16 22 C 0.10 1.28 3.26 30.63 0.10 1.38 16 23 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 24 C -0.14 -1.58 9.57 71.98 0.69 -0.89 16 25 O -0.39 -6.54 10.05 -148.98 -1.50 -8.04 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.21 6.09 7.23 -2.91 -0.02 6.07 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.03 1.77 8.12 -2.39 -0.02 1.75 16 34 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 35 H 0.08 1.51 7.03 -2.39 -0.02 1.50 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -73.28 322.74 4.67 -68.61 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.02 Total: 4.45 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.02 Total: -26.81 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -0.90 Total: -86.24 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -1.50 Total: -8.04 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -73.28 4.67 -68.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600974039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.376 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds