Wall clock time and date at job start Mon Mar 30 2020 04:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30836 * 125.90192 * 2 1 4 4 N 1.40084 * 108.20904 * 180.14351 * 3 2 1 5 5 H 0.97001 * 126.04219 * 179.85882 * 4 3 2 6 6 C 1.34947 * 107.92164 * 359.58781 * 4 3 2 7 7 C 1.35317 * 107.74962 * 0.24402 * 6 4 3 8 8 C 1.50698 * 126.04222 * 180.02562 * 7 6 4 9 9 N 1.46499 * 109.47052 * 260.02534 * 8 7 6 10 10 C 1.46504 * 119.99705 * 270.00063 * 9 8 7 11 11 C 1.34779 * 120.00317 * 89.99917 * 9 8 7 12 12 O 1.21283 * 119.99516 * 0.02562 * 11 9 8 13 13 C 1.50693 * 120.00161 * 180.02562 * 11 9 8 14 14 C 1.52999 * 109.47102 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.47011 * 179.97438 * 14 13 11 16 16 C 1.50692 * 109.47005 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00162 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00286 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99583 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00161 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47296 * 59.99976 * 20 18 16 22 22 H 1.48501 * 109.46980 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47089 * 299.99590 * 20 18 16 24 24 H 1.08995 * 109.48061 * 270.30456 * 1 2 3 25 25 H 1.09003 * 109.47004 * 30.31144 * 1 2 3 26 26 H 1.09005 * 109.47121 * 150.30115 * 1 2 3 27 27 H 1.08007 * 126.12498 * 180.26712 * 6 4 3 28 28 H 1.09003 * 109.46999 * 20.02358 * 8 7 6 29 29 H 1.09000 * 109.46941 * 140.02609 * 8 7 6 30 30 H 1.08997 * 109.47013 * 90.00047 * 10 9 8 31 31 H 1.09002 * 109.47041 * 209.99634 * 10 9 8 32 32 H 1.08998 * 109.47104 * 329.99925 * 10 9 8 33 33 H 1.09007 * 109.47200 * 300.00213 * 13 11 9 34 34 H 1.09006 * 109.47348 * 59.99615 * 13 11 9 35 35 H 1.08998 * 109.46817 * 299.99893 * 14 13 11 36 36 H 1.08995 * 109.47078 * 60.00345 * 14 13 11 37 37 H 1.08997 * 109.47271 * 300.00212 * 15 14 13 38 38 H 1.09003 * 109.46683 * 60.00045 * 15 14 13 39 39 H 0.96997 * 119.99749 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0033 5 1 4.3908 1.2078 -0.0060 6 6 3.6141 -0.7154 0.0039 7 6 2.3270 -1.1331 0.0061 8 6 1.8598 -2.5658 0.0143 9 7 1.4812 -2.9637 -1.3438 10 6 0.1038 -2.7739 -1.8055 11 6 2.3999 -3.5043 -2.1685 12 8 3.5401 -3.6618 -1.7860 13 6 2.0106 -3.9131 -3.5657 14 6 3.2296 -4.4931 -4.2858 15 6 2.8341 -4.9088 -5.7042 16 6 4.0346 -5.4806 -6.4132 17 1 4.9846 -5.5419 -5.9030 18 6 3.9203 -5.9256 -7.7132 19 7 2.7636 -5.8505 -8.3346 20 14 5.4086 -6.6337 -8.5922 21 1 5.9043 -7.8201 -7.8493 22 1 5.0248 -7.0372 -9.9689 23 1 6.4798 -5.6073 -8.6574 24 1 -0.3635 0.0055 1.0275 25 1 -0.3633 0.8872 -0.5187 26 1 -0.3634 -0.8927 -0.5092 27 1 4.4891 -1.3486 0.0077 28 1 2.6651 -3.2085 0.3701 29 1 0.9983 -2.6631 0.6749 30 1 0.0063 -1.7893 -2.2628 31 1 -0.1423 -3.5413 -2.5395 32 1 -0.5772 -2.8500 -0.9579 33 1 1.2239 -4.6662 -3.5181 34 1 1.6471 -3.0422 -4.1112 35 1 4.0158 -3.7397 -4.3334 36 1 3.5933 -5.3640 -3.7405 37 1 2.0480 -5.6622 -5.6561 38 1 2.4700 -4.0381 -6.2497 39 1 2.6833 -6.1632 -9.2493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602174476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:24 Heat of formation + Delta-G solvation = 20.412788 kcal Electronic energy + Delta-G solvation = -19742.291665 eV Core-core repulsion = 16686.077380 eV Total energy + Delta-G solvation = -3056.214285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41200 -39.48231 -35.66033 -34.18385 -33.01581 -32.13586 -31.14128 -28.36850 -27.99773 -26.81881 -25.55802 -23.42492 -21.16627 -20.38999 -19.67810 -18.81110 -17.85600 -16.61274 -16.28598 -15.86781 -15.48550 -14.80182 -14.44502 -14.37872 -14.05790 -13.47498 -13.23674 -13.10475 -12.88089 -12.69997 -12.53567 -12.19567 -12.01506 -11.87047 -11.63694 -11.30292 -10.77026 -10.67956 -10.54960 -10.51638 -9.64388 -9.62903 -9.49989 -9.26597 -9.03502 -8.71187 -8.50316 -8.29532 -5.95504 -3.96808 1.76480 2.44199 2.74381 3.00131 3.37675 3.38702 3.41081 3.45064 4.50349 4.50998 4.65988 4.89079 5.07729 5.14101 5.20511 5.31062 5.37682 5.40387 5.42940 5.56962 5.59461 5.73264 5.75652 5.80824 5.83771 5.98284 6.30588 6.51031 6.60442 6.77032 6.97577 7.13550 7.19720 7.51103 7.56489 7.73561 7.87141 8.05462 8.48814 8.50282 9.10072 9.66864 11.16004 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.030815 B = 0.003544 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.443423 B = 7899.319692 C = 8236.594945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 N -0.302 5.302 4 N -0.480 5.480 5 H 0.439 0.561 6 C 0.087 3.913 7 C -0.257 4.257 8 C 0.193 3.807 9 N -0.620 5.620 10 C 0.076 3.924 11 C 0.516 3.484 12 O -0.539 6.539 13 C -0.137 4.137 14 C -0.094 4.094 15 C 0.021 3.979 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.178 0.822 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 10.482 18.877 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 N -0.126 5.126 4 N -0.186 5.186 5 H 0.283 0.717 6 C -0.062 4.062 7 C -0.269 4.269 8 C 0.070 3.930 9 N -0.354 5.354 10 C -0.067 4.067 11 C 0.306 3.694 12 O -0.415 6.415 13 C -0.177 4.177 14 C -0.132 4.132 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.196 0.804 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.914 11.602 18.903 22.954 hybrid contribution 1.204 -0.834 -0.650 1.602 sum -4.711 10.768 18.253 21.710 Atomic orbital electron populations 1.20356 0.86918 1.03768 1.02972 1.22226 0.96857 0.90255 0.98599 1.77241 0.86814 1.22655 1.25920 1.46215 1.07241 1.05600 1.59593 0.71744 1.22564 0.99751 0.84995 0.98880 1.20365 0.92061 0.96777 1.17742 1.19531 1.00615 0.89675 0.83220 1.48052 1.10523 1.62824 1.14036 1.21892 0.82235 1.02002 1.00584 1.21214 0.84740 0.75784 0.87680 1.90626 1.19747 1.54529 1.76618 1.21865 1.02309 1.02196 0.91338 1.21439 0.94342 0.99689 0.97760 1.19123 0.96777 0.96315 0.89410 1.21240 0.96299 1.40308 0.97798 0.92674 1.25018 0.95852 0.96049 0.97565 1.69955 1.23772 1.47727 1.12300 0.86657 0.83170 0.79585 0.78599 1.20227 1.21333 1.20270 0.90545 0.90877 0.89983 0.80447 0.89452 0.90181 0.92667 0.90424 0.91193 0.89434 0.89613 0.92901 0.92747 0.96620 0.96687 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.26 36.00 0.37 -0.29 16 2 C 0.09 1.01 7.22 -82.41 -0.59 0.42 16 3 N -0.30 -3.86 12.70 33.67 0.43 -3.43 16 4 N -0.48 -5.15 7.36 30.45 0.22 -4.93 16 5 H 0.44 3.30 8.96 -182.61 -1.64 1.67 16 6 C 0.09 0.98 11.90 -17.22 -0.20 0.77 16 7 C -0.26 -3.00 5.68 -105.05 -0.60 -3.59 16 8 C 0.19 2.09 5.56 -5.20 -0.03 2.06 16 9 N -0.62 -7.59 2.86 -182.95 -0.52 -8.11 16 10 C 0.08 0.67 8.70 59.85 0.52 1.19 16 11 C 0.52 8.40 7.67 -10.99 -0.08 8.32 16 12 O -0.54 -10.48 15.56 5.56 0.09 -10.39 16 13 C -0.14 -2.33 4.25 -27.89 -0.12 -2.45 16 14 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 17 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 20 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.56 4.62 -51.93 -0.24 0.32 16 27 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.09 1.03 7.42 -51.93 -0.39 0.65 16 29 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 30 H 0.05 0.48 7.48 -51.93 -0.39 0.09 16 31 H 0.08 0.68 6.44 -51.93 -0.33 0.34 16 32 H 0.07 0.43 7.28 -51.93 -0.38 0.05 16 33 H 0.09 1.34 7.40 -51.93 -0.38 0.95 16 34 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 35 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -35.55 326.33 -7.63 -43.19 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -7.07 Total: -2.63 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.41 Total: -9.22 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.87 Total: -42.97 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.55 -7.63 -43.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602174476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.599 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds