Wall clock time and date at job start Mon Mar 30 2020 04:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30836 * 125.90192 * 2 1 4 4 N 1.40084 * 108.20904 * 180.14351 * 3 2 1 5 5 H 0.97001 * 126.04219 * 179.85882 * 4 3 2 6 6 C 1.34947 * 107.92164 * 359.58781 * 4 3 2 7 7 C 1.35317 * 107.74962 * 0.24402 * 6 4 3 8 8 C 1.50698 * 126.04222 * 180.02562 * 7 6 4 9 9 N 1.46499 * 109.47052 * 260.02534 * 8 7 6 10 10 C 1.46504 * 119.99705 * 270.00063 * 9 8 7 11 11 C 1.34779 * 120.00317 * 89.99917 * 9 8 7 12 12 O 1.21283 * 119.99516 * 0.02562 * 11 9 8 13 13 C 1.50693 * 120.00161 * 180.02562 * 11 9 8 14 14 C 1.52999 * 109.47102 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.47011 * 179.97438 * 14 13 11 16 16 C 1.50692 * 109.47005 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00162 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00286 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99583 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00161 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47296 * 59.99976 * 20 18 16 22 22 H 1.48501 * 109.46980 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47089 * 299.99590 * 20 18 16 24 24 H 1.08995 * 109.48061 * 270.30456 * 1 2 3 25 25 H 1.09003 * 109.47004 * 30.31144 * 1 2 3 26 26 H 1.09005 * 109.47121 * 150.30115 * 1 2 3 27 27 H 1.08007 * 126.12498 * 180.26712 * 6 4 3 28 28 H 1.09003 * 109.46999 * 20.02358 * 8 7 6 29 29 H 1.09000 * 109.46941 * 140.02609 * 8 7 6 30 30 H 1.08997 * 109.47013 * 90.00047 * 10 9 8 31 31 H 1.09002 * 109.47041 * 209.99634 * 10 9 8 32 32 H 1.08998 * 109.47104 * 329.99925 * 10 9 8 33 33 H 1.09007 * 109.47200 * 300.00213 * 13 11 9 34 34 H 1.09006 * 109.47348 * 59.99615 * 13 11 9 35 35 H 1.08998 * 109.46817 * 299.99893 * 14 13 11 36 36 H 1.08995 * 109.47078 * 60.00345 * 14 13 11 37 37 H 1.08997 * 109.47271 * 300.00212 * 15 14 13 38 38 H 1.09003 * 109.46683 * 60.00045 * 15 14 13 39 39 H 0.96997 * 119.99749 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0033 5 1 4.3908 1.2078 -0.0060 6 6 3.6141 -0.7154 0.0039 7 6 2.3270 -1.1331 0.0061 8 6 1.8598 -2.5658 0.0143 9 7 1.4812 -2.9637 -1.3438 10 6 0.1038 -2.7739 -1.8055 11 6 2.3999 -3.5043 -2.1685 12 8 3.5401 -3.6618 -1.7860 13 6 2.0106 -3.9131 -3.5657 14 6 3.2296 -4.4931 -4.2858 15 6 2.8341 -4.9088 -5.7042 16 6 4.0346 -5.4806 -6.4132 17 1 4.9846 -5.5419 -5.9030 18 6 3.9203 -5.9256 -7.7132 19 7 2.7636 -5.8505 -8.3346 20 14 5.4086 -6.6337 -8.5922 21 1 5.9043 -7.8201 -7.8493 22 1 5.0248 -7.0372 -9.9689 23 1 6.4798 -5.6073 -8.6574 24 1 -0.3635 0.0055 1.0275 25 1 -0.3633 0.8872 -0.5187 26 1 -0.3634 -0.8927 -0.5092 27 1 4.4891 -1.3486 0.0077 28 1 2.6651 -3.2085 0.3701 29 1 0.9983 -2.6631 0.6749 30 1 0.0063 -1.7893 -2.2628 31 1 -0.1423 -3.5413 -2.5395 32 1 -0.5772 -2.8500 -0.9579 33 1 1.2239 -4.6662 -3.5181 34 1 1.6471 -3.0422 -4.1112 35 1 4.0158 -3.7397 -4.3334 36 1 3.5933 -5.3640 -3.7405 37 1 2.0480 -5.6622 -5.6561 38 1 2.4700 -4.0381 -6.2497 39 1 2.6833 -6.1632 -9.2493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602174476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:24 Heat of formation + Delta-G solvation = -3.319615 kcal Electronic energy + Delta-G solvation = -19743.320780 eV Core-core repulsion = 16686.077380 eV Total energy + Delta-G solvation = -3057.243399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26345 -40.67793 -36.76537 -36.07557 -34.10821 -33.74715 -32.18119 -29.75810 -29.06306 -27.63391 -26.87175 -25.14450 -22.30979 -21.86598 -20.68601 -19.90635 -18.78382 -18.45212 -17.63641 -17.08037 -16.68114 -16.45590 -15.75255 -15.37417 -15.20933 -14.59741 -14.18717 -14.14604 -14.11837 -13.83654 -13.70058 -13.50814 -13.22948 -13.05178 -12.71610 -12.61494 -12.58516 -12.47532 -12.29240 -11.55223 -11.51765 -11.41483 -11.23469 -10.72273 -10.53281 -10.33997 -9.68852 -9.44001 -8.19338 -6.29418 0.90147 1.39791 1.42762 1.50800 1.55741 1.76066 2.00056 2.38424 2.44534 3.13445 3.71514 3.78812 3.93585 4.21926 4.25208 4.31165 4.41408 4.44736 4.51907 4.72130 4.78237 4.82993 4.86580 4.95766 5.00708 5.04306 5.11452 5.16382 5.18821 5.20937 5.54191 5.69006 5.73920 5.76728 5.87527 6.27984 6.38448 6.46862 6.71163 6.85779 7.29709 7.39141 8.92026 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.030815 B = 0.003544 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.443423 B = 7899.319692 C = 8236.594945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.084 3.916 3 N -0.335 5.335 4 N -0.477 5.477 5 H 0.449 0.551 6 C 0.078 3.922 7 C -0.271 4.271 8 C 0.194 3.806 9 N -0.608 5.608 10 C 0.065 3.935 11 C 0.513 3.487 12 O -0.580 6.580 13 C -0.129 4.129 14 C -0.080 4.080 15 C 0.027 3.973 16 C -0.549 4.549 17 H 0.051 0.949 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.270 1.270 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.185 0.815 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.002 0.998 38 H -0.002 1.002 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 10.489 19.562 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 N -0.159 5.159 4 N -0.185 5.185 5 H 0.295 0.705 6 C -0.071 4.071 7 C -0.283 4.283 8 C 0.071 3.929 9 N -0.340 5.340 10 C -0.077 4.077 11 C 0.303 3.697 12 O -0.460 6.460 13 C -0.169 4.169 14 C -0.118 4.118 15 C -0.010 4.010 16 C -0.587 4.587 17 H 0.069 0.931 18 C -0.194 4.194 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.195 1.195 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.202 0.798 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.865 11.641 19.612 23.817 hybrid contribution 1.445 -0.800 -0.838 1.853 sum -5.420 10.841 18.774 22.346 Atomic orbital electron populations 1.20505 0.84589 1.04497 1.04394 1.22772 0.98387 0.89667 0.97449 1.77197 0.87634 1.23787 1.27285 1.46258 1.07322 1.05649 1.59243 0.70522 1.22832 1.00329 0.85364 0.98607 1.20543 0.92244 0.97226 1.18330 1.19686 1.01721 0.88872 0.82646 1.48043 1.11127 1.60888 1.13979 1.22217 0.80686 1.02433 1.02365 1.20983 0.84784 0.76248 0.87687 1.90611 1.21478 1.56649 1.77269 1.21685 1.00288 1.02993 0.91895 1.21146 0.96115 0.98893 0.95696 1.19009 0.95493 0.94965 0.91560 1.21669 0.97116 1.41143 0.98754 0.93071 1.25906 0.99048 0.96180 0.98301 1.70062 1.25802 1.48260 1.12784 0.85561 0.79319 0.79012 0.77533 1.19326 1.20336 1.19530 0.88692 0.90878 0.88491 0.79807 0.90777 0.86676 0.92066 0.90172 0.87562 0.87436 0.88483 0.94540 0.93939 0.97970 0.98399 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.26 71.23 0.73 -0.34 16 2 C 0.08 1.79 7.22 43.10 0.31 2.10 16 3 N -0.33 -8.24 12.70 -47.39 -0.60 -8.85 16 4 N -0.48 -10.03 7.36 -57.59 -0.42 -10.46 16 5 H 0.45 6.70 8.96 -213.33 -1.91 4.79 16 6 C 0.08 1.73 11.90 83.54 0.99 2.72 16 7 C -0.27 -5.92 5.68 -20.14 -0.11 -6.04 16 8 C 0.19 3.78 5.56 85.63 0.48 4.25 16 9 N -0.61 -13.55 2.86 -851.13 -2.43 -15.98 16 10 C 0.06 0.92 8.70 127.77 1.11 2.04 16 11 C 0.51 16.29 7.67 87.65 0.67 16.96 16 12 O -0.58 -22.69 15.56 -3.04 -0.05 -22.74 16 13 C -0.13 -4.28 4.25 29.85 0.13 -4.16 16 14 C -0.08 -3.59 4.44 30.60 0.14 -3.45 16 15 C 0.03 1.44 4.97 29.85 0.15 1.59 16 16 C -0.55 -32.54 9.11 25.60 0.23 -32.31 16 17 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 18 C 0.00 0.22 5.46 84.65 0.46 0.68 16 19 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 20 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 0.94 4.62 -2.38 -0.01 0.93 16 27 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.07 1.67 7.42 -2.39 -0.02 1.66 16 29 H 0.12 1.43 7.89 -2.39 -0.02 1.42 16 30 H 0.06 0.85 7.48 -2.39 -0.02 0.84 16 31 H 0.08 1.15 6.44 -2.39 -0.02 1.13 16 32 H 0.11 0.79 7.28 -2.39 -0.02 0.77 16 33 H 0.11 3.12 7.40 -2.38 -0.02 3.11 16 34 H 0.10 3.00 8.11 -2.38 -0.02 2.98 16 35 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -77.29 326.33 3.24 -74.06 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.86 Total: 8.94 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 5.29 Total: -15.95 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -3.17 Total: -91.64 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -77.29 3.24 -74.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602174476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.737 kcal (2) G-P(sol) polarization free energy of solvation -77.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds