Wall clock time and date at job start Mon Mar 30 2020 04:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38229 * 120.41572 * 2 1 4 4 C 1.39369 * 118.35329 * 179.97438 * 3 2 1 5 5 O 1.35524 * 120.51260 * 180.02562 * 4 3 2 6 6 N 1.32823 * 118.97808 * 359.97438 * 4 3 2 7 7 C 1.31770 * 120.71803 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.09372 * 179.97438 * 7 6 4 9 9 N 1.46900 * 109.46582 * 99.17267 * 8 7 6 10 10 C 1.46907 * 110.99799 * 163.76195 * 9 8 7 11 11 C 1.50695 * 109.47104 * 191.75862 * 10 9 8 12 12 H 1.08000 * 120.00409 * 5.07663 * 11 10 9 13 13 C 1.37878 * 119.99720 * 185.06705 * 11 10 9 14 14 N 1.31512 * 120.00301 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46988 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46847 * 120.00112 * 15 13 11 18 18 H 1.48496 * 109.47087 * 240.00314 * 15 13 11 19 19 C 1.46905 * 111.00153 * 287.71444 * 9 8 7 20 20 C 1.53000 * 109.47149 * 321.82977 * 19 9 8 21 21 C 1.53001 * 109.46835 * 81.83037 * 19 9 8 22 22 N 1.31789 * 121.80965 * 0.27828 * 7 6 4 23 23 H 1.09000 * 109.47002 * 90.00314 * 1 2 3 24 24 H 1.09001 * 109.47648 * 210.00259 * 1 2 3 25 25 H 1.09003 * 109.47148 * 330.00641 * 1 2 3 26 26 H 1.08007 * 120.82002 * 359.97438 * 3 2 1 27 27 H 0.96697 * 114.00088 * 269.97526 * 5 4 3 28 28 H 1.08997 * 109.47052 * 339.17617 * 8 7 6 29 29 H 1.08995 * 109.46823 * 219.17236 * 8 7 6 30 30 H 1.08998 * 109.46733 * 311.76575 * 10 9 8 31 31 H 1.09003 * 109.46830 * 71.76388 * 10 9 8 32 32 H 0.96994 * 120.00204 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.46898 * 201.82735 * 19 9 8 34 34 H 1.08999 * 109.46908 * 67.39083 * 20 19 9 35 35 H 1.08993 * 109.46822 * 187.39236 * 20 19 9 36 36 H 1.09003 * 109.46520 * 307.39057 * 20 19 9 37 37 H 1.08994 * 109.47280 * 64.76431 * 21 19 9 38 38 H 1.09002 * 109.46995 * 184.76492 * 21 19 9 39 39 H 1.09003 * 109.46993 * 304.76109 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 6 3.5996 1.1419 0.0005 5 8 4.3292 2.2839 0.0011 6 7 4.2008 -0.0425 0.0016 7 6 3.4954 -1.1554 0.0016 8 6 4.2154 -2.4793 0.0021 9 7 4.2548 -3.0145 1.3696 10 6 4.5911 -4.4446 1.3657 11 6 4.3425 -5.0228 2.7349 12 1 3.8952 -4.4128 3.5057 13 6 4.6861 -6.3308 3.0036 14 7 5.2311 -7.0736 2.0652 15 14 4.3773 -7.0478 4.7007 16 1 3.7585 -6.0146 5.5695 17 1 3.4618 -8.2115 4.5873 18 1 5.6655 -7.4874 5.2942 19 6 5.1943 -2.2550 2.2054 20 6 6.4239 -1.8776 1.3767 21 6 4.5118 -0.9835 2.7135 22 7 2.1776 -1.1426 -0.0049 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5137 26 1 1.6870 2.1388 -0.0004 27 1 4.5417 2.6154 -0.8821 28 1 5.2329 -2.3397 -0.3628 29 1 3.6894 -3.1792 -0.6470 30 1 3.9700 -4.9618 0.6345 31 1 5.6417 -4.5700 1.1037 32 1 5.4731 -7.9936 2.2543 33 1 5.5017 -2.8663 3.0539 34 1 6.1371 -1.1616 0.6066 35 1 7.1765 -1.4308 2.0262 36 1 6.8338 -2.7718 0.9071 37 1 3.6865 -1.2527 3.3726 38 1 5.2332 -0.3786 3.2629 39 1 4.1295 -0.4132 1.8668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685995293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:55 Heat of formation + Delta-G solvation = 26.091274 kcal Electronic energy + Delta-G solvation = -20757.587766 eV Core-core repulsion = 17701.619719 eV Total energy + Delta-G solvation = -3055.968047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28936 -38.06207 -37.34170 -34.14567 -32.72642 -32.08660 -30.66942 -28.72635 -27.77575 -26.53183 -25.22682 -23.03812 -22.03188 -21.93411 -18.98961 -18.68117 -17.70017 -16.22130 -15.93218 -15.52386 -15.28703 -14.74441 -14.39673 -14.11908 -13.93953 -13.32689 -12.96986 -12.75859 -12.66250 -12.46968 -12.11419 -12.04526 -11.89116 -11.45931 -10.97822 -10.89088 -10.80702 -10.57435 -10.46541 -10.36608 -10.19078 -9.78602 -9.74709 -9.29501 -9.14892 -8.97840 -8.40403 -7.20243 -5.99215 -3.99597 0.91934 1.06190 3.31130 3.33950 3.41306 3.46857 3.69521 4.07201 4.35013 4.47781 4.93749 5.00506 5.04887 5.20701 5.36058 5.42215 5.46630 5.58034 5.74047 5.81568 5.85635 6.07385 6.09840 6.14625 6.22952 6.38683 6.40775 6.50946 6.67498 6.89301 6.96541 7.10232 7.28876 7.33506 7.42366 7.86071 8.10961 8.21708 8.30847 8.56641 9.08823 9.64188 11.11456 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025962 B = 0.005259 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.244858 B = 5322.836694 C = 5752.512521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.186 3.814 3 C -0.259 4.259 4 C 0.354 3.646 5 O -0.478 6.478 6 N -0.532 5.532 7 C 0.381 3.619 8 C 0.106 3.894 9 N -0.520 5.520 10 C 0.194 3.806 11 C -0.502 4.502 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.082 3.918 20 C -0.185 4.185 21 C -0.148 4.148 22 N -0.503 5.503 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.403 0.597 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.000 1.000 32 H 0.260 0.740 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 17.087 -6.850 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.041 3.959 3 C -0.283 4.283 4 C 0.166 3.834 5 O -0.285 6.285 6 N -0.259 5.259 7 C 0.114 3.886 8 C -0.024 4.024 9 N -0.245 5.245 10 C 0.070 3.930 11 C -0.541 4.541 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.212 1.212 19 C -0.027 4.027 20 C -0.243 4.243 21 C -0.206 4.206 22 N -0.219 5.219 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.163 0.837 27 H 0.261 0.739 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.110 16.101 -6.085 17.955 hybrid contribution 0.424 0.476 0.178 0.662 sum -4.686 16.577 -5.906 18.211 Atomic orbital electron populations 1.20776 0.87791 1.04222 1.03498 1.21700 0.97733 0.87558 0.88935 1.22660 0.94648 1.01065 1.09884 1.19407 0.87101 0.85498 0.91366 1.84738 1.74033 1.35754 1.33943 1.67835 1.43129 0.98527 1.16372 1.23160 0.86029 0.93236 0.86142 1.20994 0.98117 0.88659 0.94675 1.62232 1.50339 1.05890 1.06044 1.19783 0.94964 0.80121 0.98156 1.21164 1.39603 0.96330 0.96962 0.91840 1.24964 0.95352 0.97057 0.97164 1.69962 1.42812 1.08272 1.32817 0.86465 0.77757 0.79050 0.84311 1.19699 1.21041 1.21158 1.21584 0.89926 0.94174 0.96985 1.22499 0.98831 1.01567 1.01420 1.22128 1.00124 0.97496 1.00863 1.68229 1.09671 1.29444 1.14581 0.89793 0.89424 0.90357 0.83667 0.73893 0.91564 0.88784 0.95243 0.98205 0.93025 0.89107 0.90855 0.93467 0.92890 0.93284 0.93787 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.22 36.00 0.37 -0.62 16 2 C 0.19 2.48 6.82 -82.31 -0.56 1.92 16 3 C -0.26 -3.07 9.81 -39.16 -0.38 -3.45 16 4 C 0.35 4.80 7.38 -16.70 -0.12 4.67 16 5 O -0.48 -5.25 13.58 -18.27 -0.25 -5.49 16 6 N -0.53 -8.63 6.96 -10.78 -0.08 -8.70 16 7 C 0.38 6.71 5.16 -157.22 -0.81 5.90 16 8 C 0.11 2.02 4.99 -4.98 -0.02 2.00 16 9 N -0.52 -11.58 4.36 -229.52 -1.00 -12.58 16 10 C 0.19 5.05 4.65 -4.97 -0.02 5.03 16 11 C -0.50 -14.19 8.10 -34.44 -0.28 -14.47 16 12 H 0.06 1.82 7.70 -52.49 -0.40 1.41 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 15 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 C 0.08 1.71 2.69 -67.71 -0.18 1.53 16 20 C -0.18 -3.44 7.83 37.16 0.29 -3.15 16 21 C -0.15 -2.86 9.15 37.16 0.34 -2.52 16 22 N -0.50 -8.55 10.27 -7.05 -0.07 -8.62 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 26 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 27 H 0.40 2.18 9.06 45.56 0.41 2.60 16 28 H 0.07 1.22 5.48 -51.93 -0.28 0.94 16 29 H 0.09 1.78 7.78 -51.93 -0.40 1.38 16 30 H 0.03 0.81 7.82 -51.93 -0.41 0.40 16 31 H 0.00 0.00 7.27 -51.93 -0.38 -0.37 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.09 2.11 6.81 -51.93 -0.35 1.76 16 34 H 0.07 1.31 5.08 -51.93 -0.26 1.05 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.03 7.13 -51.93 -0.37 0.66 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.05 3.16 -51.93 -0.16 0.89 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -32.81 314.02 -7.14 -39.96 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.71 Total: 1.44 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.49 Total: -1.68 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.41 Total: -55.84 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.25 Total: -5.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.81 -7.14 -39.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.048 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds