Wall clock time and date at job start Mon Mar 30 2020 04:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38229 * 120.41572 * 2 1 4 4 C 1.39369 * 118.35329 * 179.97438 * 3 2 1 5 5 O 1.35524 * 120.51260 * 180.02562 * 4 3 2 6 6 N 1.32823 * 118.97808 * 359.97438 * 4 3 2 7 7 C 1.31770 * 120.71803 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.09372 * 179.97438 * 7 6 4 9 9 N 1.46900 * 109.46582 * 99.17267 * 8 7 6 10 10 C 1.46907 * 110.99799 * 163.76195 * 9 8 7 11 11 C 1.50695 * 109.47104 * 191.75862 * 10 9 8 12 12 H 1.08000 * 120.00409 * 5.07663 * 11 10 9 13 13 C 1.37878 * 119.99720 * 185.06705 * 11 10 9 14 14 N 1.31512 * 120.00301 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46988 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46847 * 120.00112 * 15 13 11 18 18 H 1.48496 * 109.47087 * 240.00314 * 15 13 11 19 19 C 1.46905 * 111.00153 * 287.71444 * 9 8 7 20 20 C 1.53000 * 109.47149 * 321.82977 * 19 9 8 21 21 C 1.53001 * 109.46835 * 81.83037 * 19 9 8 22 22 N 1.31789 * 121.80965 * 0.27828 * 7 6 4 23 23 H 1.09000 * 109.47002 * 90.00314 * 1 2 3 24 24 H 1.09001 * 109.47648 * 210.00259 * 1 2 3 25 25 H 1.09003 * 109.47148 * 330.00641 * 1 2 3 26 26 H 1.08007 * 120.82002 * 359.97438 * 3 2 1 27 27 H 0.96697 * 114.00088 * 269.97526 * 5 4 3 28 28 H 1.08997 * 109.47052 * 339.17617 * 8 7 6 29 29 H 1.08995 * 109.46823 * 219.17236 * 8 7 6 30 30 H 1.08998 * 109.46733 * 311.76575 * 10 9 8 31 31 H 1.09003 * 109.46830 * 71.76388 * 10 9 8 32 32 H 0.96994 * 120.00204 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.46898 * 201.82735 * 19 9 8 34 34 H 1.08999 * 109.46908 * 67.39083 * 20 19 9 35 35 H 1.08993 * 109.46822 * 187.39236 * 20 19 9 36 36 H 1.09003 * 109.46520 * 307.39057 * 20 19 9 37 37 H 1.08994 * 109.47280 * 64.76431 * 21 19 9 38 38 H 1.09002 * 109.46995 * 184.76492 * 21 19 9 39 39 H 1.09003 * 109.46993 * 304.76109 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 6 3.5996 1.1419 0.0005 5 8 4.3292 2.2839 0.0011 6 7 4.2008 -0.0425 0.0016 7 6 3.4954 -1.1554 0.0016 8 6 4.2154 -2.4793 0.0021 9 7 4.2548 -3.0145 1.3696 10 6 4.5911 -4.4446 1.3657 11 6 4.3425 -5.0228 2.7349 12 1 3.8952 -4.4128 3.5057 13 6 4.6861 -6.3308 3.0036 14 7 5.2311 -7.0736 2.0652 15 14 4.3773 -7.0478 4.7007 16 1 3.7585 -6.0146 5.5695 17 1 3.4618 -8.2115 4.5873 18 1 5.6655 -7.4874 5.2942 19 6 5.1943 -2.2550 2.2054 20 6 6.4239 -1.8776 1.3767 21 6 4.5118 -0.9835 2.7135 22 7 2.1776 -1.1426 -0.0049 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5137 26 1 1.6870 2.1388 -0.0004 27 1 4.5417 2.6154 -0.8821 28 1 5.2329 -2.3397 -0.3628 29 1 3.6894 -3.1792 -0.6470 30 1 3.9700 -4.9618 0.6345 31 1 5.6417 -4.5700 1.1037 32 1 5.4731 -7.9936 2.2543 33 1 5.5017 -2.8663 3.0539 34 1 6.1371 -1.1616 0.6066 35 1 7.1765 -1.4308 2.0262 36 1 6.8338 -2.7718 0.9071 37 1 3.6865 -1.2527 3.3726 38 1 5.2332 -0.3786 3.2629 39 1 4.1295 -0.4132 1.8668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685995293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:55 Heat of formation + Delta-G solvation = 0.245924 kcal Electronic energy + Delta-G solvation = -20758.708505 eV Core-core repulsion = 17701.619719 eV Total energy + Delta-G solvation = -3057.088786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.41376 -39.47580 -38.48755 -35.35946 -34.73752 -33.32933 -32.29614 -29.99194 -29.12845 -28.09628 -26.99760 -24.13325 -23.97562 -23.19413 -20.57043 -19.75395 -18.73608 -18.36395 -17.23227 -16.91536 -16.40900 -16.33598 -16.07438 -15.60517 -15.14047 -14.64183 -14.42009 -14.14170 -14.02887 -13.88289 -13.39413 -13.36322 -13.27147 -12.91737 -12.78623 -12.63231 -12.47646 -12.33747 -12.15789 -11.90210 -11.57671 -11.49536 -11.27100 -11.04191 -10.60920 -10.33525 -10.14547 -9.00236 -8.18736 -6.27758 -0.16207 0.03515 1.40343 1.40999 1.54610 2.33646 2.39509 2.54402 2.97073 3.13551 3.29612 3.46792 3.99092 4.07235 4.11975 4.17593 4.33332 4.35825 4.52840 4.54192 4.63266 4.73170 4.76859 4.78705 4.89862 4.94523 5.03902 5.06641 5.14228 5.20583 5.37969 5.43914 5.47207 5.68452 6.04351 6.07157 6.34089 6.57802 6.59033 6.87342 7.15561 7.40950 8.92025 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025962 B = 0.005259 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.244858 B = 5322.836694 C = 5752.512521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.174 3.826 3 C -0.239 4.239 4 C 0.349 3.651 5 O -0.479 6.479 6 N -0.550 5.550 7 C 0.366 3.634 8 C 0.108 3.892 9 N -0.528 5.528 10 C 0.211 3.789 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.082 3.918 20 C -0.173 4.173 21 C -0.139 4.139 22 N -0.536 5.536 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.187 0.813 27 H 0.427 0.573 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.006 0.994 31 H -0.024 1.024 32 H 0.265 0.735 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.061 0.939 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 19.543 -6.399 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.030 3.970 3 C -0.262 4.262 4 C 0.163 3.837 5 O -0.289 6.289 6 N -0.278 5.278 7 C 0.098 3.902 8 C -0.021 4.021 9 N -0.253 5.253 10 C 0.086 3.914 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.192 4.192 14 N -0.572 5.572 15 Si 0.791 3.209 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.027 4.027 20 C -0.231 4.231 21 C -0.196 4.196 22 N -0.253 5.253 23 H 0.122 0.878 24 H 0.091 0.909 25 H 0.127 0.873 26 H 0.204 0.796 27 H 0.289 0.711 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.024 0.976 31 H -0.006 1.006 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.097 18.610 -5.659 20.384 hybrid contribution 0.700 -0.142 -0.044 0.716 sum -5.397 18.468 -5.703 20.068 Atomic orbital electron populations 1.20905 0.85046 1.04978 1.04985 1.22376 0.99477 0.87074 0.88100 1.23026 0.93949 1.02152 1.07090 1.19657 0.88081 0.85278 0.90724 1.84704 1.73763 1.34331 1.36140 1.67707 1.43633 0.99136 1.17282 1.22493 0.86429 0.92707 0.88565 1.20882 0.98653 0.89991 0.92620 1.62118 1.50779 1.04052 1.08313 1.19397 0.92833 0.82630 0.96572 1.21382 1.39792 0.96810 0.97620 0.92690 1.25821 0.94878 0.97333 1.01209 1.70074 1.43498 1.08722 1.34913 0.85386 0.77946 0.78233 0.79359 1.19261 1.20226 1.20267 1.21551 0.90815 0.94223 0.96112 1.22371 0.98109 1.01114 1.01501 1.22040 0.99888 0.96715 1.00990 1.68162 1.09578 1.31826 1.15775 0.87799 0.90915 0.87293 0.79607 0.71066 0.91253 0.89715 0.97589 1.00610 0.92656 0.92112 0.89822 0.91764 0.94464 0.94687 0.92018 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 10.22 71.23 0.73 -0.89 16 2 C 0.17 4.24 6.82 42.46 0.29 4.53 16 3 C -0.24 -4.81 9.81 22.54 0.22 -4.59 16 4 C 0.35 8.50 7.38 84.82 0.63 9.13 16 5 O -0.48 -8.85 13.58 -88.28 -1.20 -10.05 16 6 N -0.55 -17.13 6.96 -300.68 -2.09 -19.23 16 7 C 0.37 12.85 5.16 138.76 0.72 13.56 16 8 C 0.11 4.31 4.99 85.56 0.43 4.74 16 9 N -0.53 -24.47 4.36 -880.06 -3.84 -28.31 16 10 C 0.21 11.61 4.65 85.55 0.40 12.01 16 11 C -0.52 -30.31 8.10 25.60 0.21 -30.10 16 12 H 0.05 3.25 7.70 -2.91 -0.02 3.22 16 13 C 0.01 0.33 5.46 84.66 0.46 0.79 16 14 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 15 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 C 0.08 3.48 2.69 44.91 0.12 3.60 16 20 C -0.17 -6.46 7.83 71.98 0.56 -5.90 16 21 C -0.14 -5.28 9.15 71.98 0.66 -4.62 16 22 N -0.54 -18.01 10.27 -176.22 -1.81 -19.82 16 23 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.11 1.06 8.09 -2.39 -0.02 1.04 16 26 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 27 H 0.43 3.09 9.06 -74.06 -0.67 2.42 16 28 H 0.07 2.66 5.48 -2.39 -0.01 2.64 16 29 H 0.08 3.42 7.78 -2.39 -0.02 3.41 16 30 H 0.01 0.35 7.82 -2.39 -0.02 0.33 16 31 H -0.02 -1.40 7.27 -2.39 -0.02 -1.41 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.06 2.93 6.81 -2.39 -0.02 2.92 16 34 H 0.08 2.96 5.08 -2.39 -0.01 2.95 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.48 7.13 -2.39 -0.02 1.47 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.36 3.16 -2.39 -0.01 2.35 16 Total: -1.00 -72.71 314.02 -0.82 -73.52 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.40 Total: 10.45 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.42 Total: 2.26 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -7.46 Total: -123.69 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.20 Total: -10.05 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -72.71 -0.82 -73.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.770 kcal (2) G-P(sol) polarization free energy of solvation -72.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds