Wall clock time and date at job start Mon Mar 30 2020 04:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34856 * 125.89038 * 2 1 4 4 C 1.40885 * 107.41694 * 180.24346 * 3 2 1 5 5 C 1.34859 * 107.42023 * 359.77623 * 4 3 2 6 6 C 1.50698 * 125.89306 * 180.02562 * 5 4 3 7 7 N 1.36340 * 125.89276 * 179.85985 * 2 1 3 8 8 N 1.40102 * 125.63199 * 0.02562 * 7 2 1 9 9 C 1.34771 * 120.00410 * 308.02906 * 8 7 2 10 10 O 1.21277 * 119.99974 * 0.75064 * 9 8 7 11 11 C 1.50702 * 119.99952 * 180.75011 * 9 8 7 12 12 H 1.08998 * 109.46873 * 40.00465 * 11 9 8 13 13 N 1.46903 * 109.46862 * 160.00199 * 11 9 8 14 14 C 1.52998 * 109.47348 * 280.00189 * 11 9 8 15 15 C 1.53001 * 109.47112 * 175.00052 * 14 11 9 16 16 C 1.50699 * 109.46909 * 179.97438 * 15 14 11 17 17 H 1.08003 * 120.00273 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00090 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00531 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99860 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47030 * 90.00279 * 20 18 16 22 22 H 1.48494 * 109.47182 * 210.00075 * 20 18 16 23 23 H 1.48501 * 109.47289 * 330.00285 * 20 18 16 24 24 H 1.08997 * 109.47004 * 282.11984 * 1 2 3 25 25 H 1.09004 * 109.47292 * 42.12439 * 1 2 3 26 26 H 1.08997 * 109.46750 * 162.12031 * 1 2 3 27 27 H 1.08001 * 126.28836 * 0.02562 * 3 2 1 28 28 H 1.08002 * 126.29219 * 179.76979 * 4 3 2 29 29 H 1.08997 * 109.47043 * 269.96872 * 6 5 4 30 30 H 1.08999 * 109.46964 * 29.97108 * 6 5 4 31 31 H 1.09000 * 109.47105 * 149.97367 * 6 5 4 32 32 H 0.97001 * 119.99588 * 128.03560 * 8 7 2 33 33 H 1.00899 * 111.00072 * 60.00197 * 13 11 9 34 34 H 1.00905 * 111.00076 * 183.95683 * 13 11 9 35 35 H 1.08998 * 109.46994 * 295.00033 * 14 11 9 36 36 H 1.08999 * 109.47392 * 54.99838 * 14 11 9 37 37 H 1.08998 * 109.47175 * 299.99869 * 15 14 11 38 38 H 1.09006 * 109.47108 * 60.00339 * 15 14 11 39 39 H 0.96996 * 120.00224 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6338 0.6461 -0.0057 5 6 3.6091 -0.7022 -0.0040 6 6 4.8134 -1.6080 -0.0080 7 7 2.3063 -1.1045 0.0027 8 7 1.8624 -2.4333 0.0054 9 6 0.9665 -2.8427 0.9253 10 8 0.5344 -2.0574 1.7423 11 6 0.5018 -4.2762 0.9388 12 1 1.3470 -4.9340 0.7365 13 7 -0.0628 -4.5955 2.2568 14 6 -0.5684 -4.4755 -0.1363 15 6 -0.9504 -5.9554 -0.2074 16 6 -2.0050 -6.1516 -1.2660 17 1 -2.3668 -5.3054 -1.8312 18 6 -2.5086 -7.4112 -1.5122 19 7 -3.4292 -7.5824 -2.4356 20 14 -1.8833 -8.8747 -0.5341 21 1 -2.7172 -9.0499 0.6821 22 1 -1.9636 -10.0994 -1.3700 23 1 -0.4721 -8.6381 -0.1369 24 1 -0.3633 0.2158 1.0047 25 1 -0.3634 0.7622 -0.6893 26 1 -0.3633 -0.9780 -0.3155 27 1 1.9671 2.1207 0.0004 28 1 4.5160 1.2692 -0.0107 29 1 5.0991 -1.8281 -1.0365 30 1 5.6410 -1.1143 0.5013 31 1 4.5712 -2.5369 0.5085 32 1 2.1999 -3.0587 -0.6547 33 1 -0.8486 -3.9987 2.4679 34 1 -0.3228 -5.5689 2.3127 35 1 -1.4493 -3.8844 0.1139 36 1 -0.1777 -4.1544 -1.1019 37 1 -0.0695 -6.5464 -0.4577 38 1 -1.3413 -6.2765 0.7582 39 1 -3.7833 -8.4686 -2.6090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691630278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:10 Heat of formation + Delta-G solvation = 32.532452 kcal Electronic energy + Delta-G solvation = -20183.834102 eV Core-core repulsion = 17128.145365 eV Total energy + Delta-G solvation = -3055.688737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.61702 -39.47662 -35.87962 -34.78240 -32.92995 -32.63076 -30.48006 -29.73754 -29.20477 -26.82002 -24.23443 -24.06507 -21.46555 -20.70757 -20.16400 -19.54199 -17.76734 -16.96657 -16.81467 -15.35874 -15.15533 -14.87568 -14.43158 -14.31915 -14.09327 -13.70005 -13.59667 -13.23193 -13.05382 -12.98626 -12.76411 -12.48790 -12.22419 -12.01084 -11.93693 -11.56679 -11.46987 -11.09855 -10.56160 -10.25944 -10.18372 -9.97036 -9.75542 -9.41775 -8.70632 -8.62293 -8.46567 -7.84852 -6.19389 -4.20041 1.51340 2.10511 2.52898 2.95408 3.18741 3.27118 3.27775 3.80214 4.30046 4.54787 4.79247 4.91265 5.12116 5.12611 5.18645 5.19941 5.33133 5.36636 5.40222 5.42412 5.68075 5.73349 5.84859 5.93611 6.10742 6.12623 6.18812 6.32530 6.48475 6.76680 6.94155 6.99389 7.07241 7.13775 7.29046 7.31971 7.53012 7.61219 8.20072 8.35231 8.83807 9.41137 10.93683 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.004212 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.927074 B = 6646.233779 C = 6793.761831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.049 3.951 3 C -0.203 4.203 4 C -0.186 4.186 5 C 0.006 3.994 6 C -0.083 4.083 7 N -0.242 5.242 8 N -0.534 5.534 9 C 0.525 3.475 10 O -0.504 6.504 11 C 0.085 3.915 12 H 0.103 0.897 13 N -0.829 5.829 14 C -0.132 4.132 15 C -0.009 4.009 16 C -0.527 4.527 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.425 0.575 33 H 0.351 0.649 34 H 0.356 0.644 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.013 0.987 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 11.240 4.540 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 C -0.228 4.228 4 C -0.212 4.212 5 C -0.104 4.104 6 C -0.140 4.140 7 N -0.008 5.008 8 N -0.284 5.284 9 C 0.312 3.688 10 O -0.374 6.374 11 C -0.031 4.031 12 H 0.121 0.879 13 N -0.362 5.362 14 C -0.172 4.172 15 C -0.047 4.047 16 C -0.565 4.565 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.190 1.190 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.267 0.733 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.031 0.969 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.970 11.491 5.370 18.869 hybrid contribution -0.486 -1.461 -0.539 1.632 sum 13.484 10.030 4.831 17.486 Atomic orbital electron populations 1.20303 0.87852 1.02482 1.02941 1.20434 0.93880 0.83804 1.08079 1.20527 0.92574 0.97159 1.12556 1.20531 0.97468 0.92151 1.11006 1.20383 0.83149 0.94652 1.12187 1.20269 0.93463 0.97860 1.02452 1.42667 1.04847 0.95143 1.58145 1.45461 1.47141 0.99648 1.36103 1.21473 0.77295 0.91174 0.78878 1.90722 1.54652 1.54945 1.37060 1.21434 0.99716 0.89950 0.92027 0.87873 1.58688 1.40303 1.10432 1.26771 1.22278 0.96817 1.01296 0.96774 1.19573 0.97248 0.90530 0.97340 1.21023 1.20981 0.95278 1.19212 0.91030 1.25036 0.94485 0.98929 0.94883 1.69902 1.28301 1.23187 1.32274 0.86774 0.79906 0.82290 0.80264 1.20149 1.21241 1.19003 0.90310 0.90786 0.92229 0.84069 0.84091 0.91132 0.90077 0.91914 0.73265 0.83555 0.82807 0.91682 0.91731 0.96211 0.96909 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 8.68 36.01 0.31 -0.77 16 2 C 0.05 0.72 6.36 -81.79 -0.52 0.20 16 3 C -0.20 -2.67 10.76 -39.78 -0.43 -3.10 16 4 C -0.19 -2.28 10.76 -39.78 -0.43 -2.71 16 5 C 0.01 0.08 7.01 -81.79 -0.57 -0.50 16 6 C -0.08 -0.76 10.28 36.00 0.37 -0.39 16 7 N -0.24 -3.46 3.45 -5.44 -0.02 -3.48 16 8 N -0.53 -7.07 6.10 31.22 0.19 -6.88 16 9 C 0.53 8.00 6.11 -10.99 -0.07 7.93 16 10 O -0.50 -9.13 14.07 5.56 0.08 -9.06 16 11 C 0.09 1.25 3.21 -68.86 -0.22 1.02 16 12 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 13 N -0.83 -12.22 8.94 -5.65 -0.05 -12.27 16 14 C -0.13 -2.28 4.78 -26.73 -0.13 -2.41 16 15 C -0.01 -0.20 3.81 -27.88 -0.11 -0.31 16 16 C -0.53 -14.08 9.66 -34.44 -0.33 -14.41 16 17 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 20 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 24 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.89 6.96 -51.93 -0.36 0.53 16 27 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.43 4.47 8.83 -182.60 -1.61 2.85 16 33 H 0.35 5.28 8.58 -39.29 -0.34 4.94 16 34 H 0.36 5.02 7.55 -39.29 -0.30 4.72 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 38 H 0.01 0.26 6.30 -51.93 -0.33 -0.07 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -32.34 324.39 -8.14 -40.47 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.11 Total: 10.14 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.22 Total: -13.62 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.89 Total: -48.58 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.34 -8.14 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.007 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds