Wall clock time and date at job start Mon Mar 30 2020 04:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34856 * 125.89038 * 2 1 4 4 C 1.40885 * 107.41694 * 180.24346 * 3 2 1 5 5 C 1.34859 * 107.42023 * 359.77623 * 4 3 2 6 6 C 1.50698 * 125.89306 * 180.02562 * 5 4 3 7 7 N 1.36340 * 125.89276 * 179.85985 * 2 1 3 8 8 N 1.40102 * 125.63199 * 0.02562 * 7 2 1 9 9 C 1.34771 * 120.00410 * 308.02906 * 8 7 2 10 10 O 1.21277 * 119.99974 * 0.75064 * 9 8 7 11 11 C 1.50702 * 119.99952 * 180.75011 * 9 8 7 12 12 H 1.08998 * 109.46873 * 40.00465 * 11 9 8 13 13 N 1.46903 * 109.46862 * 160.00199 * 11 9 8 14 14 C 1.52998 * 109.47348 * 280.00189 * 11 9 8 15 15 C 1.53001 * 109.47112 * 175.00052 * 14 11 9 16 16 C 1.50699 * 109.46909 * 179.97438 * 15 14 11 17 17 H 1.08003 * 120.00273 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00090 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00531 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99860 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47030 * 90.00279 * 20 18 16 22 22 H 1.48494 * 109.47182 * 210.00075 * 20 18 16 23 23 H 1.48501 * 109.47289 * 330.00285 * 20 18 16 24 24 H 1.08997 * 109.47004 * 282.11984 * 1 2 3 25 25 H 1.09004 * 109.47292 * 42.12439 * 1 2 3 26 26 H 1.08997 * 109.46750 * 162.12031 * 1 2 3 27 27 H 1.08001 * 126.28836 * 0.02562 * 3 2 1 28 28 H 1.08002 * 126.29219 * 179.76979 * 4 3 2 29 29 H 1.08997 * 109.47043 * 269.96872 * 6 5 4 30 30 H 1.08999 * 109.46964 * 29.97108 * 6 5 4 31 31 H 1.09000 * 109.47105 * 149.97367 * 6 5 4 32 32 H 0.97001 * 119.99588 * 128.03560 * 8 7 2 33 33 H 1.00899 * 111.00072 * 60.00197 * 13 11 9 34 34 H 1.00905 * 111.00076 * 183.95683 * 13 11 9 35 35 H 1.08998 * 109.46994 * 295.00033 * 14 11 9 36 36 H 1.08999 * 109.47392 * 54.99838 * 14 11 9 37 37 H 1.08998 * 109.47175 * 299.99869 * 15 14 11 38 38 H 1.09006 * 109.47108 * 60.00339 * 15 14 11 39 39 H 0.96996 * 120.00224 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6338 0.6461 -0.0057 5 6 3.6091 -0.7022 -0.0040 6 6 4.8134 -1.6080 -0.0080 7 7 2.3063 -1.1045 0.0027 8 7 1.8624 -2.4333 0.0054 9 6 0.9665 -2.8427 0.9253 10 8 0.5344 -2.0574 1.7423 11 6 0.5018 -4.2762 0.9388 12 1 1.3470 -4.9340 0.7365 13 7 -0.0628 -4.5955 2.2568 14 6 -0.5684 -4.4755 -0.1363 15 6 -0.9504 -5.9554 -0.2074 16 6 -2.0050 -6.1516 -1.2660 17 1 -2.3668 -5.3054 -1.8312 18 6 -2.5086 -7.4112 -1.5122 19 7 -3.4292 -7.5824 -2.4356 20 14 -1.8833 -8.8747 -0.5341 21 1 -2.7172 -9.0499 0.6821 22 1 -1.9636 -10.0994 -1.3700 23 1 -0.4721 -8.6381 -0.1369 24 1 -0.3633 0.2158 1.0047 25 1 -0.3634 0.7622 -0.6893 26 1 -0.3633 -0.9780 -0.3155 27 1 1.9671 2.1207 0.0004 28 1 4.5160 1.2692 -0.0107 29 1 5.0991 -1.8281 -1.0365 30 1 5.6410 -1.1143 0.5013 31 1 4.5712 -2.5369 0.5085 32 1 2.1999 -3.0587 -0.6547 33 1 -0.8486 -3.9987 2.4679 34 1 -0.3228 -5.5689 2.3127 35 1 -1.4493 -3.8844 0.1139 36 1 -0.1777 -4.1544 -1.1019 37 1 -0.0695 -6.5464 -0.4577 38 1 -1.3413 -6.2765 0.7582 39 1 -3.7833 -8.4686 -2.6090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691630278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:10 Heat of formation + Delta-G solvation = 9.691912 kcal Electronic energy + Delta-G solvation = -20184.824543 eV Core-core repulsion = 17128.145365 eV Total energy + Delta-G solvation = -3056.679177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.63216 -40.65685 -37.27011 -35.90340 -34.85286 -33.56131 -32.14400 -30.82166 -30.10355 -28.29579 -25.63998 -25.14305 -22.81535 -21.99492 -21.33223 -20.64020 -19.23643 -18.56601 -17.96482 -16.56392 -16.38771 -16.21369 -16.06440 -15.50329 -15.25299 -14.95253 -14.74298 -14.62750 -14.28134 -14.09215 -13.91690 -13.65454 -13.40474 -13.16407 -13.00998 -12.85777 -12.70011 -12.47913 -12.17627 -11.94629 -11.69374 -11.43622 -11.30475 -11.08905 -10.78309 -9.80999 -9.52831 -8.82469 -8.30678 -6.36847 0.48937 1.05628 1.38685 1.38835 1.40235 1.51094 1.99222 2.35558 2.75886 3.05313 3.46387 3.59892 3.95410 4.04008 4.04725 4.15596 4.31380 4.43547 4.47973 4.49082 4.63372 4.66780 4.75932 4.86036 4.89136 5.02711 5.09749 5.23811 5.31305 5.39032 5.42763 5.60830 5.74002 5.99208 6.05580 6.22653 6.24810 6.26804 6.40885 6.72083 7.11631 7.28328 8.86115 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.004212 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.927074 B = 6646.233779 C = 6793.761831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.012 3.988 3 C -0.205 4.205 4 C -0.195 4.195 5 C -0.001 4.001 6 C -0.081 4.081 7 N -0.256 5.256 8 N -0.524 5.524 9 C 0.527 3.473 10 O -0.536 6.536 11 C 0.098 3.902 12 H 0.132 0.868 13 N -0.829 5.829 14 C -0.120 4.120 15 C -0.006 4.006 16 C -0.536 4.536 17 H 0.026 0.974 18 C 0.002 3.998 19 N -0.953 5.953 20 Si 0.953 3.047 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.233 1.233 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.039 0.961 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.438 0.562 33 H 0.348 0.652 34 H 0.361 0.639 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.026 0.974 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.599 10.728 5.679 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 C -0.230 4.230 4 C -0.221 4.221 5 C -0.110 4.110 6 C -0.139 4.139 7 N -0.023 5.023 8 N -0.273 5.273 9 C 0.314 3.686 10 O -0.409 6.409 11 C -0.019 4.019 12 H 0.149 0.851 13 N -0.362 5.362 14 C -0.160 4.160 15 C -0.043 4.043 16 C -0.574 4.574 17 H 0.044 0.956 18 C -0.194 4.194 19 N -0.594 5.594 20 Si 0.776 3.224 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.156 1.156 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.058 0.942 27 H 0.176 0.824 28 H 0.185 0.815 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.283 0.717 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.781 10.991 6.498 21.086 hybrid contribution -1.361 -1.174 -0.967 2.041 sum 15.420 9.817 5.531 19.099 Atomic orbital electron populations 1.20218 0.88083 1.01908 1.02630 1.20693 0.94247 0.84725 1.10186 1.20897 0.93076 0.97686 1.11339 1.20937 0.97940 0.92474 1.10710 1.21076 0.83382 0.95600 1.10967 1.20393 0.92448 0.97248 1.03775 1.42900 1.05511 0.95090 1.58798 1.45291 1.46490 0.99857 1.35688 1.21511 0.77289 0.91079 0.78731 1.90713 1.55897 1.55706 1.38574 1.21332 0.99477 0.90256 0.90805 0.85071 1.58710 1.40254 1.10738 1.26495 1.22075 0.97216 0.98664 0.98078 1.19506 0.95911 0.93103 0.95804 1.21424 1.22094 0.93931 1.19926 0.95609 1.26084 0.94643 1.02633 0.96069 1.70081 1.30470 1.24051 1.34786 0.85616 0.80971 0.77376 0.78412 1.19323 1.21626 1.15626 0.91482 0.88917 0.94173 0.82406 0.81526 0.89469 0.88303 0.92034 0.71731 0.83899 0.82199 0.93565 0.91631 0.94586 0.95534 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 8.68 71.24 0.62 -1.37 16 2 C 0.01 0.34 6.36 41.08 0.26 0.60 16 3 C -0.20 -5.13 10.76 22.14 0.24 -4.89 16 4 C -0.20 -4.38 10.76 22.14 0.24 -4.14 16 5 C 0.00 -0.02 7.01 41.08 0.29 0.27 16 6 C -0.08 -1.24 10.28 71.24 0.73 -0.51 16 7 N -0.26 -7.02 3.45 -171.11 -0.59 -7.61 16 8 N -0.52 -13.17 6.10 -173.54 -1.06 -14.23 16 9 C 0.53 15.50 6.11 87.66 0.54 16.03 16 10 O -0.54 -19.34 14.07 -3.02 -0.04 -19.38 16 11 C 0.10 2.65 3.21 44.17 0.14 2.80 16 12 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 13 N -0.83 -22.79 8.94 -171.80 -1.54 -24.33 16 14 C -0.12 -4.06 4.78 30.59 0.15 -3.91 16 15 C -0.01 -0.23 3.81 29.85 0.11 -0.12 16 16 C -0.54 -29.02 9.66 25.60 0.25 -28.77 16 17 H 0.03 1.57 7.99 -2.91 -0.02 1.55 16 18 C 0.00 0.14 5.47 84.65 0.46 0.60 16 19 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 20 Si 0.95 41.08 27.47 68.60 1.88 42.96 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.23 -8.79 6.54 99.48 0.65 -8.14 16 24 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.04 1.24 6.96 -2.39 -0.02 1.22 16 27 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.44 8.35 8.83 -213.32 -1.88 6.47 16 33 H 0.35 10.12 8.58 -89.69 -0.77 9.35 16 34 H 0.36 9.17 7.55 -89.69 -0.68 8.49 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 1.36 7.20 -2.39 -0.02 1.34 16 38 H 0.03 1.01 6.30 -2.38 -0.02 1.00 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -71.53 324.39 0.67 -70.85 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -2.31 Total: 33.13 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 4.02 Total: -23.41 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -2.89 Total: -104.16 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.04 Total: -19.38 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.88 Total: 42.96 kcal Total: -71.53 0.67 -70.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691630278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.547 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds