Wall clock time and date at job start Mon Mar 30 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.47205 * 110.64017 * 2 1 4 4 N 2.60802 * 110.64147 * 359.97438 * 2 1 3 5 5 C 1.55160 * 110.72025 * 236.66829 * 2 1 3 6 6 C 1.55126 * 101.48685 * 205.96914 * 5 2 1 7 7 N 1.47430 * 104.72143 * 37.29330 * 6 5 2 8 8 C 1.34781 * 125.64789 * 155.82169 * 7 6 5 9 9 O 1.21275 * 119.99676 * 179.69404 * 8 7 6 10 10 C 1.50703 * 119.99971 * 359.68644 * 8 7 6 11 11 H 1.09002 * 109.47083 * 320.00492 * 10 8 7 12 12 N 1.46898 * 109.47113 * 200.00293 * 10 8 7 13 13 C 1.53000 * 109.46801 * 80.00207 * 10 8 7 14 14 C 1.52997 * 109.47060 * 184.99876 * 13 10 8 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 10 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.47019 * 108.70333 * 335.55291 * 7 6 5 24 24 H 1.08995 * 109.47280 * 296.86043 * 1 2 3 25 25 H 1.09011 * 109.47342 * 56.85733 * 1 2 3 26 26 H 1.08998 * 109.47171 * 176.85600 * 1 2 3 27 27 H 1.09002 * 111.00475 * 324.20599 * 5 2 1 28 28 H 1.09000 * 111.00745 * 88.01688 * 5 2 1 29 29 H 1.09002 * 110.50073 * 278.45433 * 6 5 2 30 30 H 1.09000 * 110.34604 * 156.05451 * 6 5 2 31 31 H 1.00899 * 111.00057 * 300.00501 * 12 10 8 32 32 H 1.00902 * 110.99515 * 63.95638 * 12 10 8 33 33 H 1.09002 * 109.47398 * 305.00045 * 13 10 8 34 34 H 1.09001 * 109.47194 * 65.00225 * 13 10 8 35 35 H 1.09002 * 109.47153 * 300.00319 * 14 13 10 36 36 H 1.08998 * 109.47533 * 59.99948 * 14 13 10 37 37 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.88235 * 120.70476 * 23 7 6 39 39 H 1.09003 * 109.88350 * 241.87404 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0488 1.3776 0.0000 4 7 2.4493 2.4406 -0.0011 5 6 2.0789 -0.7974 -1.2125 6 6 3.4665 -1.2467 -0.6842 7 7 3.2444 -1.5495 0.7415 8 6 3.9923 -2.3811 1.4937 9 8 3.7194 -2.5516 2.6629 10 6 5.1675 -3.0991 0.8816 11 1 4.9069 -3.4316 -0.1232 12 7 5.5147 -4.2629 1.7079 13 6 6.3646 -2.1490 0.8100 14 6 7.5181 -2.8364 0.0766 15 6 8.6974 -1.9009 0.0066 16 1 8.6310 -0.9147 0.4420 17 6 9.8615 -2.3041 -0.6124 18 7 9.9425 -3.5052 -1.1422 19 14 11.3232 -1.1443 -0.6998 20 1 10.9782 0.1377 -0.0345 21 1 12.4862 -1.7608 -0.0125 22 1 11.6672 -0.8878 -2.1214 23 6 2.0760 -0.7892 1.2085 24 1 -0.3633 0.4643 0.9167 25 1 -0.3634 0.5619 -0.8605 26 1 -0.3633 -1.0261 -0.0564 27 1 1.4451 -1.6560 -1.4348 28 1 2.1842 -0.1554 -2.0871 29 1 4.1947 -0.4428 -0.7922 30 1 3.8030 -2.1382 -1.2133 31 1 5.7602 -3.9807 2.6450 32 1 4.7632 -4.9362 1.7182 33 1 6.0793 -1.2449 0.2720 34 1 6.6810 -1.8864 1.8195 35 1 7.8033 -3.7404 0.6147 36 1 7.2018 -3.0990 -0.9328 37 1 10.7617 -3.7891 -1.5773 38 1 1.3129 -1.4732 1.5800 39 1 2.3741 -0.0990 1.9978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693943847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:39 Heat of formation + Delta-G solvation = -19.631753 kcal Electronic energy + Delta-G solvation = -20107.144819 eV Core-core repulsion = 17049.194072 eV Total energy + Delta-G solvation = -3057.950747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57697 -38.61564 -36.16289 -35.24890 -33.33741 -32.79700 -30.13058 -30.03955 -27.73526 -25.92020 -24.16475 -22.85861 -22.62259 -20.38505 -19.22210 -17.83108 -17.12374 -16.26271 -15.68638 -15.60854 -15.34616 -14.64665 -14.40362 -14.37479 -13.98961 -13.73382 -13.47703 -13.16168 -12.96308 -12.70081 -12.54553 -12.34716 -12.22045 -11.99588 -11.67208 -11.54764 -11.44631 -11.17625 -10.91054 -10.67859 -10.52612 -10.15790 -9.80245 -9.38958 -9.00013 -8.77687 -8.38404 -8.23079 -5.94698 -3.96589 2.41002 2.48109 2.68498 2.88801 3.33743 3.41513 3.44222 3.45857 3.96681 4.11799 4.34132 4.49804 4.75474 4.81048 4.90233 4.99980 5.16611 5.18464 5.31929 5.37389 5.39614 5.41541 5.51155 5.61002 5.61463 5.71455 5.81700 6.09473 6.42255 6.64331 7.06112 7.25880 7.32373 7.48669 7.74831 7.76883 7.94847 8.11728 8.18586 8.47856 9.11444 9.66849 11.16194 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.004656 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.930570 B = 6012.158369 C = 6812.244971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.020 3.980 3 C 0.215 3.785 4 N -0.420 5.420 5 C -0.117 4.117 6 C 0.092 3.908 7 N -0.619 5.619 8 C 0.500 3.500 9 O -0.550 6.550 10 C 0.083 3.917 11 H 0.099 0.901 12 N -0.806 5.806 13 C -0.096 4.096 14 C 0.032 3.968 15 C -0.522 4.522 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.119 3.881 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.348 0.652 32 H 0.334 0.666 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.013 0.987 37 H 0.259 0.741 38 H 0.087 0.913 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.120 2.410 -0.622 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 C -0.104 4.104 4 N -0.094 5.094 5 C -0.156 4.156 6 C -0.031 4.031 7 N -0.355 5.355 8 C 0.289 3.711 9 O -0.428 6.428 10 C -0.033 4.033 11 H 0.117 0.883 12 N -0.334 5.334 13 C -0.134 4.134 14 C -0.005 4.005 15 C -0.560 4.560 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.005 4.005 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.854 3.637 -0.539 20.191 hybrid contribution -0.085 0.678 0.479 0.835 sum -19.939 4.315 -0.060 20.401 Atomic orbital electron populations 1.21790 0.89795 1.04033 1.03571 1.19176 0.97079 0.83772 0.98352 1.28675 0.93631 0.94295 0.93783 1.81265 1.08144 1.12312 1.07659 1.23045 0.96364 1.00186 0.96055 1.22559 0.97039 1.02448 0.81031 1.48657 1.29933 1.45215 1.11661 1.22599 0.83823 0.78232 0.86459 1.90658 1.71060 1.64531 1.16535 1.21842 0.91814 0.91868 0.97746 0.88323 1.59020 1.43546 1.12381 1.18457 1.21661 0.94057 0.96133 1.01550 1.19011 0.90362 0.96279 0.94837 1.21311 0.98081 1.00486 1.36132 0.92998 1.24976 0.98545 0.95076 0.95638 1.69984 1.27174 1.18031 1.37977 0.86612 0.83000 0.81218 0.77625 1.19875 1.21022 1.21080 1.21935 0.89248 0.94700 0.94650 0.91226 0.90995 0.89948 0.88115 0.88731 0.90453 0.88814 0.83772 0.85402 0.92896 0.92882 0.94635 0.96854 0.93156 0.89437 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.57 8.44 37.15 0.31 -0.26 16 2 C 0.02 0.15 0.86 -155.46 -0.13 0.01 16 3 C 0.21 2.29 13.64 -20.76 -0.28 2.00 16 4 N -0.42 -5.79 18.54 42.15 0.78 -5.00 16 5 C -0.12 -0.73 6.02 -24.46 -0.15 -0.88 16 6 C 0.09 0.91 6.03 -2.41 -0.01 0.89 16 7 N -0.62 -7.51 3.33 -170.38 -0.57 -8.07 16 8 C 0.50 7.74 7.09 -10.98 -0.08 7.66 16 9 O -0.55 -9.98 16.58 5.56 0.09 -9.89 16 10 C 0.08 1.36 2.56 -68.86 -0.18 1.18 16 11 H 0.10 1.49 6.92 -51.93 -0.36 1.13 16 12 N -0.81 -13.27 8.44 -5.65 -0.05 -13.32 16 13 C -0.10 -1.93 4.77 -26.73 -0.13 -2.05 16 14 C 0.03 0.81 4.86 -27.89 -0.14 0.68 16 15 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.12 1.16 6.02 -3.07 -0.02 1.14 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 26 H 0.08 0.23 8.10 -51.93 -0.42 -0.19 16 27 H 0.10 0.42 8.02 -51.93 -0.42 0.01 16 28 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 29 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 30 H 0.09 0.86 6.92 -51.93 -0.36 0.50 16 31 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 32 H 0.33 4.68 9.06 -39.29 -0.36 4.32 16 33 H 0.05 1.02 7.39 -51.93 -0.38 0.64 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.09 0.74 7.82 -51.93 -0.41 0.33 16 39 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -34.54 328.78 -6.19 -40.73 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.90 Total: 2.88 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.21 Total: -3.09 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.90 Total: -52.40 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.54 -6.19 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693943847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.095 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds