Wall clock time and date at job start Mon Mar 30 2020 04:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.47205 * 110.64017 * 2 1 4 4 N 2.60802 * 110.64147 * 359.97438 * 2 1 3 5 5 C 1.55160 * 110.72025 * 236.66829 * 2 1 3 6 6 C 1.55126 * 101.48685 * 205.96914 * 5 2 1 7 7 N 1.47430 * 104.72143 * 37.29330 * 6 5 2 8 8 C 1.34781 * 125.64789 * 155.82169 * 7 6 5 9 9 O 1.21275 * 119.99676 * 179.69404 * 8 7 6 10 10 C 1.50703 * 119.99971 * 359.68644 * 8 7 6 11 11 H 1.09002 * 109.47083 * 320.00492 * 10 8 7 12 12 N 1.46898 * 109.47113 * 200.00293 * 10 8 7 13 13 C 1.53000 * 109.46801 * 80.00207 * 10 8 7 14 14 C 1.52997 * 109.47060 * 184.99876 * 13 10 8 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 10 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.47019 * 108.70333 * 335.55291 * 7 6 5 24 24 H 1.08995 * 109.47280 * 296.86043 * 1 2 3 25 25 H 1.09011 * 109.47342 * 56.85733 * 1 2 3 26 26 H 1.08998 * 109.47171 * 176.85600 * 1 2 3 27 27 H 1.09002 * 111.00475 * 324.20599 * 5 2 1 28 28 H 1.09000 * 111.00745 * 88.01688 * 5 2 1 29 29 H 1.09002 * 110.50073 * 278.45433 * 6 5 2 30 30 H 1.09000 * 110.34604 * 156.05451 * 6 5 2 31 31 H 1.00899 * 111.00057 * 300.00501 * 12 10 8 32 32 H 1.00902 * 110.99515 * 63.95638 * 12 10 8 33 33 H 1.09002 * 109.47398 * 305.00045 * 13 10 8 34 34 H 1.09001 * 109.47194 * 65.00225 * 13 10 8 35 35 H 1.09002 * 109.47153 * 300.00319 * 14 13 10 36 36 H 1.08998 * 109.47533 * 59.99948 * 14 13 10 37 37 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.88235 * 120.70476 * 23 7 6 39 39 H 1.09003 * 109.88350 * 241.87404 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0488 1.3776 0.0000 4 7 2.4493 2.4406 -0.0011 5 6 2.0789 -0.7974 -1.2125 6 6 3.4665 -1.2467 -0.6842 7 7 3.2444 -1.5495 0.7415 8 6 3.9923 -2.3811 1.4937 9 8 3.7194 -2.5516 2.6629 10 6 5.1675 -3.0991 0.8816 11 1 4.9069 -3.4316 -0.1232 12 7 5.5147 -4.2629 1.7079 13 6 6.3646 -2.1490 0.8100 14 6 7.5181 -2.8364 0.0766 15 6 8.6974 -1.9009 0.0066 16 1 8.6310 -0.9147 0.4420 17 6 9.8615 -2.3041 -0.6124 18 7 9.9425 -3.5052 -1.1422 19 14 11.3232 -1.1443 -0.6998 20 1 10.9782 0.1377 -0.0345 21 1 12.4862 -1.7608 -0.0125 22 1 11.6672 -0.8878 -2.1214 23 6 2.0760 -0.7892 1.2085 24 1 -0.3633 0.4643 0.9167 25 1 -0.3634 0.5619 -0.8605 26 1 -0.3633 -1.0261 -0.0564 27 1 1.4451 -1.6560 -1.4348 28 1 2.1842 -0.1554 -2.0871 29 1 4.1947 -0.4428 -0.7922 30 1 3.8030 -2.1382 -1.2133 31 1 5.7602 -3.9807 2.6450 32 1 4.7632 -4.9362 1.7182 33 1 6.0793 -1.2449 0.2720 34 1 6.6810 -1.8864 1.8195 35 1 7.8033 -3.7404 0.6147 36 1 7.2018 -3.0990 -0.9328 37 1 10.7617 -3.7891 -1.5773 38 1 1.3129 -1.4732 1.5800 39 1 2.3741 -0.0990 1.9978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693943847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:38 Heat of formation + Delta-G solvation = -44.663780 kcal Electronic energy + Delta-G solvation = -20108.230289 eV Core-core repulsion = 17049.194072 eV Total energy + Delta-G solvation = -3059.036217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.56410 -39.63231 -37.13067 -36.81609 -34.83843 -34.12538 -31.94035 -30.75134 -28.83832 -27.33315 -25.40583 -24.04986 -23.41709 -22.10659 -20.34381 -18.86397 -18.25708 -18.13692 -16.93633 -16.70185 -16.57456 -16.36150 -15.46042 -15.24846 -15.21206 -14.78700 -14.35484 -14.22166 -14.14832 -13.89797 -13.64620 -13.51685 -13.40443 -13.23923 -12.84066 -12.73985 -12.53273 -12.30539 -12.23818 -12.08628 -11.77596 -11.75417 -11.62431 -11.25241 -11.00328 -10.50035 -9.78451 -9.63790 -8.15330 -6.24983 1.39160 1.40316 1.45152 1.52698 1.57028 1.66130 1.90238 2.42940 2.72211 3.17725 3.24936 3.45010 3.56449 3.75107 3.80141 4.06462 4.22198 4.27286 4.29325 4.56584 4.67065 4.67859 4.75520 4.85037 4.92021 4.98295 5.01391 5.10579 5.20748 5.23701 5.35360 5.55817 5.83744 5.97736 6.09047 6.29566 6.33726 6.45206 6.53203 6.93119 7.00472 7.42989 8.95883 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.004656 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.930570 B = 6012.158369 C = 6812.244971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.029 3.971 3 C 0.237 3.763 4 N -0.481 5.481 5 C -0.103 4.103 6 C 0.078 3.922 7 N -0.614 5.614 8 C 0.503 3.497 9 O -0.581 6.581 10 C 0.091 3.909 11 H 0.115 0.885 12 N -0.818 5.818 13 C -0.082 4.082 14 C 0.042 3.958 15 C -0.545 4.545 16 H 0.049 0.951 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.275 1.275 23 C 0.114 3.886 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.135 0.865 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.344 0.656 32 H 0.349 0.651 33 H 0.059 0.941 34 H 0.036 0.964 35 H 0.008 0.992 36 H -0.001 1.001 37 H 0.263 0.737 38 H 0.109 0.891 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.839 2.562 -1.602 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.025 3.975 3 C -0.081 4.081 4 N -0.157 5.157 5 C -0.142 4.142 6 C -0.044 4.044 7 N -0.348 5.348 8 C 0.290 3.710 9 O -0.461 6.461 10 C -0.025 4.025 11 H 0.133 0.867 12 N -0.347 5.347 13 C -0.120 4.120 14 C 0.005 3.995 15 C -0.583 4.583 16 H 0.067 0.933 17 C -0.192 4.192 18 N -0.566 5.566 19 Si 0.780 3.220 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.201 1.201 23 C -0.010 4.010 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.017 0.983 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.607 3.808 -1.549 21.994 hybrid contribution 0.443 0.616 0.776 1.085 sum -21.163 4.423 -0.773 21.634 Atomic orbital electron populations 1.21860 0.86696 1.05949 1.04249 1.19401 0.99077 0.81317 0.97680 1.29390 0.92018 0.94691 0.91952 1.81282 1.10232 1.14471 1.09668 1.23126 0.94153 1.01306 0.95583 1.22806 0.99289 1.02356 0.79919 1.48643 1.29822 1.43814 1.12502 1.22136 0.83947 0.78841 0.86045 1.90643 1.71961 1.65848 1.17660 1.21598 0.90795 0.91249 0.98809 0.86741 1.58991 1.44602 1.12880 1.18200 1.21364 0.94060 0.96823 0.99758 1.18803 0.91470 0.95086 0.94132 1.21727 0.99497 1.00890 1.36157 0.93254 1.25817 1.01478 0.96672 0.95186 1.70094 1.28169 1.19710 1.38637 0.85553 0.79282 0.79115 0.78012 1.19367 1.20482 1.20078 1.22136 0.88778 0.94759 0.95289 0.91167 0.89782 0.87438 0.84664 0.87307 0.92401 0.87926 0.84227 0.83743 0.92244 0.94487 0.97376 0.98273 0.92841 0.87264 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 8.44 71.98 0.61 0.02 16 2 C 0.03 0.34 0.86 -52.80 -0.05 0.30 16 3 C 0.24 4.77 13.64 89.44 1.22 5.99 16 4 N -0.48 -13.25 18.54 20.01 0.37 -12.88 16 5 C -0.10 -0.91 6.02 32.06 0.19 -0.72 16 6 C 0.08 1.39 6.03 86.93 0.52 1.92 16 7 N -0.61 -13.96 3.33 -811.35 -2.70 -16.66 16 8 C 0.50 15.17 7.09 87.66 0.62 15.79 16 9 O -0.58 -20.85 16.58 -3.01 -0.05 -20.90 16 10 C 0.09 2.96 2.56 44.17 0.11 3.07 16 11 H 0.11 3.33 6.92 -2.39 -0.02 3.31 16 12 N -0.82 -26.99 8.44 -171.80 -1.45 -28.44 16 13 C -0.08 -3.34 4.77 30.59 0.15 -3.20 16 14 C 0.04 2.19 4.86 29.85 0.15 2.33 16 15 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 16 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 17 C 0.01 0.38 5.46 84.65 0.46 0.85 16 18 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 19 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 C 0.11 1.99 6.02 86.73 0.52 2.51 16 24 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.11 0.04 8.10 -2.39 -0.02 0.02 16 27 H 0.14 0.39 8.02 -2.39 -0.02 0.37 16 28 H 0.11 0.76 8.03 -2.39 -0.02 0.74 16 29 H 0.06 1.27 7.86 -2.39 -0.02 1.25 16 30 H 0.10 1.66 6.92 -2.39 -0.02 1.64 16 31 H 0.34 11.82 8.58 -89.69 -0.77 11.05 16 32 H 0.35 9.58 9.06 -89.69 -0.81 8.77 16 33 H 0.06 2.32 7.39 -2.39 -0.02 2.30 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.01 0.45 7.75 -2.39 -0.02 0.43 16 36 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 38 H 0.11 1.50 7.82 -2.39 -0.02 1.49 16 39 H 0.05 1.14 7.82 -2.39 -0.02 1.12 16 Total: -1.00 -76.59 328.78 2.71 -73.88 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.52 Total: 15.96 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 4.74 Total: -2.13 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -3.49 Total: -113.73 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -76.59 2.71 -73.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693943847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.218 kcal (2) G-P(sol) polarization free energy of solvation -76.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds