Wall clock time and date at job start Mon Mar 30 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46491 * 120.00207 * 2 1 4 4 C 1.50704 * 109.47208 * 90.00058 * 3 2 1 5 5 H 1.07994 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00167 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00277 * 179.97438 * 6 4 3 8 8 Si 1.86810 * 120.00033 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46763 * 90.00038 * 8 6 4 10 10 H 1.48494 * 109.47100 * 210.00456 * 8 6 4 11 11 H 1.48498 * 109.46846 * 330.00192 * 8 6 4 12 12 C 1.34778 * 119.99841 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99956 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00019 * 359.97438 * 12 2 1 15 15 N 1.46895 * 109.47364 * 186.01854 * 14 12 2 16 16 C 1.47900 * 111.00210 * 176.64319 * 15 14 12 17 17 C 1.53994 * 107.05934 * 214.15163 * 16 15 14 18 18 C 1.54604 * 105.13687 * 1.22339 * 17 16 15 19 19 C 1.52996 * 110.72044 * 140.31611 * 18 17 16 20 20 C 1.47193 * 110.72413 * 263.59568 * 18 17 16 21 21 N 6.87585 * 128.44771 * 177.83656 * 2 1 3 22 22 C 1.48533 * 111.00243 * 59.24272 * 15 14 12 23 23 H 1.09003 * 109.47040 * 89.99765 * 1 2 3 24 24 H 1.08997 * 109.47495 * 209.99933 * 1 2 3 25 25 H 1.09001 * 109.47028 * 330.00547 * 1 2 3 26 26 H 1.09000 * 109.47507 * 329.99815 * 3 2 1 27 27 H 1.09006 * 109.47239 * 210.00105 * 3 2 1 28 28 H 0.97004 * 120.00113 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47123 * 306.01512 * 14 12 2 30 30 H 1.09005 * 109.47284 * 66.01099 * 14 12 2 31 31 H 1.09004 * 109.91846 * 333.50808 * 16 15 14 32 32 H 1.09000 * 109.91699 * 94.60152 * 16 15 14 33 33 H 1.08997 * 110.30621 * 120.13580 * 17 16 15 34 34 H 1.08996 * 110.31200 * 242.21058 * 17 16 15 35 35 H 1.09002 * 109.47327 * 61.45305 * 19 18 17 36 36 H 1.08998 * 109.47199 * 181.45546 * 19 18 17 37 37 H 1.09005 * 109.47454 * 301.45264 * 19 18 17 38 38 H 1.09000 * 110.66791 * 278.16088 * 22 15 14 39 39 H 1.08997 * 110.66198 * 41.28885 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0961 2.2417 6 6 3.1261 2.8778 1.6728 7 7 3.3449 3.2578 2.9127 8 14 3.7331 3.9292 0.2529 9 1 2.6812 4.9074 -0.1236 10 1 4.9607 4.6561 0.6648 11 1 4.0399 3.0595 -0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 7 2.3333 -3.5851 0.1441 16 6 1.6225 -4.8794 0.2287 17 6 2.4344 -5.7794 1.1784 18 6 3.6218 -4.9064 1.6453 19 6 3.9135 -5.1380 3.1292 20 6 4.8176 -5.1744 0.8299 21 7 5.7404 -5.3812 0.2033 22 6 3.1070 -3.4648 1.4062 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6085 2.0283 -0.5138 27 1 3.1500 1.1383 -0.5139 28 1 3.8217 4.0837 3.0899 29 1 0.6807 -2.4850 0.8310 30 1 0.8414 -2.5779 -0.9393 31 1 0.6198 -4.7269 0.6282 32 1 1.5628 -5.3355 -0.7595 33 1 1.8246 -6.0763 2.0317 34 1 2.7961 -6.6602 0.6480 35 1 4.1877 -6.1811 3.2871 36 1 4.7358 -4.4948 3.4426 37 1 3.0249 -4.9032 3.7152 38 1 3.9410 -2.7741 1.2819 39 1 2.4611 -3.1463 2.2244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693959479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:30 Heat of formation + Delta-G solvation = 8.939288 kcal Electronic energy + Delta-G solvation = -20400.690137 eV Core-core repulsion = 17343.978323 eV Total energy + Delta-G solvation = -3056.711813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07549 -38.60802 -36.07236 -34.91091 -33.51674 -32.52521 -30.18541 -28.85055 -27.30333 -25.97854 -25.15720 -22.63879 -22.09325 -21.08366 -18.50491 -17.54745 -16.97133 -16.20892 -15.95323 -15.47223 -14.88520 -14.63691 -14.21300 -14.02796 -13.59837 -13.47252 -13.22618 -12.92566 -12.72054 -12.48511 -12.39924 -12.29128 -12.06450 -11.95143 -11.85499 -11.57073 -11.35406 -11.22946 -11.08118 -10.91113 -10.73705 -10.51676 -10.10480 -9.56284 -8.99949 -8.60613 -8.36059 -7.71211 -6.10539 -4.09255 2.86300 2.92058 3.26511 3.31801 3.35016 3.40398 3.58249 3.85998 4.10677 4.39131 4.40862 4.48134 4.76026 4.95852 5.02814 5.20529 5.24303 5.25563 5.39843 5.46652 5.52683 5.53344 5.60128 5.66583 5.68949 5.82380 5.85574 5.92849 6.11688 6.23335 6.61743 6.79604 6.86605 7.00901 7.32768 7.59788 7.70888 8.23003 8.45114 8.90738 8.98740 9.50244 11.02731 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.005096 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.293797 B = 5493.573657 C = 5964.563521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.599 5.599 3 C 0.216 3.784 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.505 3.495 13 O -0.523 6.523 14 C 0.030 3.970 15 N -0.502 5.502 16 C 0.033 3.967 17 C -0.116 4.116 18 C 0.026 3.974 19 C -0.136 4.136 20 C 0.233 3.767 21 N -0.436 5.436 22 C 0.048 3.952 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -16.241 -1.866 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.333 5.333 3 C 0.095 3.905 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.291 3.709 13 O -0.399 6.399 14 C -0.101 4.101 15 N -0.226 5.226 16 C -0.095 4.095 17 C -0.155 4.155 18 C 0.022 3.978 19 C -0.195 4.195 20 C -0.085 4.085 21 N -0.111 5.111 22 C -0.080 4.080 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.546 -16.360 -3.185 17.907 hybrid contribution -0.768 0.889 0.291 1.210 sum -7.314 -15.471 -2.894 17.356 Atomic orbital electron populations 1.21679 0.81064 1.02939 1.00489 1.47834 1.06189 1.07090 1.72140 1.19660 0.92558 0.79902 0.98343 1.21305 1.37004 1.07128 0.91217 0.90834 1.24846 0.95198 0.97362 0.95548 1.69888 1.41526 1.23539 1.18664 0.86873 0.78918 0.80806 0.83332 1.20103 1.20933 1.18813 1.20135 0.88234 0.84727 0.77801 1.90660 1.13652 1.86759 1.48823 1.22262 0.94363 0.90570 1.02895 1.64591 1.22071 1.00580 1.35342 1.22954 0.96184 0.90241 1.00154 1.22551 0.94919 0.98103 0.99908 1.19073 0.87397 0.97892 0.93435 1.21800 1.03579 1.02757 0.91316 1.28441 0.93728 0.92966 0.93375 1.81094 1.11547 1.09015 1.09432 1.23530 0.99859 0.93963 0.90662 0.93600 0.92295 0.90526 0.95717 0.94064 0.92558 0.91920 0.88115 0.92980 0.89963 0.89325 0.90294 0.91512 0.91110 0.90330 0.86817 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.26 59.85 0.61 1.79 16 2 N -0.60 -11.91 2.86 -182.95 -0.52 -12.43 16 3 C 0.22 5.21 4.23 -5.20 -0.02 5.19 16 4 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 5 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.39 6.54 56.52 0.37 -6.03 16 12 C 0.51 9.89 7.31 -10.98 -0.08 9.81 16 13 O -0.52 -12.59 13.87 5.56 0.08 -12.51 16 14 C 0.03 0.42 4.03 -4.98 -0.02 0.40 16 15 N -0.50 -6.91 5.06 -231.89 -1.17 -8.08 16 16 C 0.03 0.31 6.70 -2.76 -0.02 0.29 16 17 C -0.12 -0.94 6.05 -25.37 -0.15 -1.10 16 18 C 0.03 0.29 0.89 -155.44 -0.14 0.15 16 19 C -0.14 -1.14 8.46 37.16 0.31 -0.82 16 20 C 0.23 3.39 13.82 -20.81 -0.29 3.10 16 21 N -0.44 -7.52 18.53 42.09 0.78 -6.74 16 22 C 0.05 0.68 4.46 -1.90 -0.01 0.67 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.67 6.28 -51.93 -0.33 0.34 16 25 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 26 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 27 H 0.04 1.09 6.48 -51.93 -0.34 0.75 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.06 0.73 6.92 -51.93 -0.36 0.37 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.39 7.68 -51.93 -0.40 -0.01 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.50 7.85 -51.93 -0.41 0.09 16 34 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.11 2.09 6.32 -51.93 -0.33 1.76 16 39 H 0.06 0.82 7.90 -51.93 -0.41 0.41 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -35.67 322.15 -6.03 -41.70 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.91 Total: -3.25 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.24 Total: 6.24 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.14 Total: -53.87 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.67 -6.03 -41.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693959479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.638 kcal (2) G-P(sol) polarization free energy of solvation -35.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds