Wall clock time and date at job start Mon Mar 30 2020 04:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46491 * 120.00207 * 2 1 4 4 C 1.50704 * 109.47208 * 90.00058 * 3 2 1 5 5 H 1.07994 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00167 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00277 * 179.97438 * 6 4 3 8 8 Si 1.86810 * 120.00033 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46763 * 90.00038 * 8 6 4 10 10 H 1.48494 * 109.47100 * 210.00456 * 8 6 4 11 11 H 1.48498 * 109.46846 * 330.00192 * 8 6 4 12 12 C 1.34778 * 119.99841 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99956 * 180.02562 * 12 2 1 14 14 C 1.50702 * 120.00019 * 359.97438 * 12 2 1 15 15 N 1.46895 * 109.47364 * 186.01854 * 14 12 2 16 16 C 1.47900 * 111.00210 * 176.64319 * 15 14 12 17 17 C 1.53994 * 107.05934 * 214.15163 * 16 15 14 18 18 C 1.54604 * 105.13687 * 1.22339 * 17 16 15 19 19 C 1.52996 * 110.72044 * 140.31611 * 18 17 16 20 20 C 1.47193 * 110.72413 * 263.59568 * 18 17 16 21 21 N 6.87585 * 128.44771 * 177.83656 * 2 1 3 22 22 C 1.48533 * 111.00243 * 59.24272 * 15 14 12 23 23 H 1.09003 * 109.47040 * 89.99765 * 1 2 3 24 24 H 1.08997 * 109.47495 * 209.99933 * 1 2 3 25 25 H 1.09001 * 109.47028 * 330.00547 * 1 2 3 26 26 H 1.09000 * 109.47507 * 329.99815 * 3 2 1 27 27 H 1.09006 * 109.47239 * 210.00105 * 3 2 1 28 28 H 0.97004 * 120.00113 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47123 * 306.01512 * 14 12 2 30 30 H 1.09005 * 109.47284 * 66.01099 * 14 12 2 31 31 H 1.09004 * 109.91846 * 333.50808 * 16 15 14 32 32 H 1.09000 * 109.91699 * 94.60152 * 16 15 14 33 33 H 1.08997 * 110.30621 * 120.13580 * 17 16 15 34 34 H 1.08996 * 110.31200 * 242.21058 * 17 16 15 35 35 H 1.09002 * 109.47327 * 61.45305 * 19 18 17 36 36 H 1.08998 * 109.47199 * 181.45546 * 19 18 17 37 37 H 1.09005 * 109.47454 * 301.45264 * 19 18 17 38 38 H 1.09000 * 110.66791 * 278.16088 * 22 15 14 39 39 H 1.08997 * 110.66198 * 41.28885 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0961 2.2417 6 6 3.1261 2.8778 1.6728 7 7 3.3449 3.2578 2.9127 8 14 3.7331 3.9292 0.2529 9 1 2.6812 4.9074 -0.1236 10 1 4.9607 4.6561 0.6648 11 1 4.0399 3.0595 -0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 7 2.3333 -3.5851 0.1441 16 6 1.6225 -4.8794 0.2287 17 6 2.4344 -5.7794 1.1784 18 6 3.6218 -4.9064 1.6453 19 6 3.9135 -5.1380 3.1292 20 6 4.8176 -5.1744 0.8299 21 7 5.7404 -5.3812 0.2033 22 6 3.1070 -3.4648 1.4062 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6085 2.0283 -0.5138 27 1 3.1500 1.1383 -0.5139 28 1 3.8217 4.0837 3.0899 29 1 0.6807 -2.4850 0.8310 30 1 0.8414 -2.5779 -0.9393 31 1 0.6198 -4.7269 0.6282 32 1 1.5628 -5.3355 -0.7595 33 1 1.8246 -6.0763 2.0317 34 1 2.7961 -6.6602 0.6480 35 1 4.1877 -6.1811 3.2871 36 1 4.7358 -4.4948 3.4426 37 1 3.0249 -4.9032 3.7152 38 1 3.9410 -2.7741 1.2819 39 1 2.4611 -3.1463 2.2244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693959479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:29 Heat of formation + Delta-G solvation = -18.408179 kcal Electronic energy + Delta-G solvation = -20401.876012 eV Core-core repulsion = 17343.978323 eV Total energy + Delta-G solvation = -3057.897689 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20330 -39.91163 -37.28020 -36.53691 -34.77690 -34.38799 -31.25185 -30.37164 -28.42880 -27.25045 -26.29120 -24.15090 -23.31315 -22.00980 -19.96997 -19.14167 -18.57772 -17.53558 -17.25375 -16.71183 -16.33404 -15.90121 -15.59780 -15.13998 -14.87699 -14.58417 -14.49583 -14.30446 -13.89252 -13.82511 -13.63137 -13.54217 -13.37559 -13.25362 -13.01660 -12.78786 -12.73450 -12.40584 -12.27734 -12.04541 -11.99846 -11.83600 -11.75431 -11.62172 -10.81965 -10.51671 -9.36359 -9.29746 -8.34291 -6.38126 1.30168 1.35368 1.45615 1.73265 1.79303 1.85915 2.27775 2.30763 2.88123 3.00260 3.06075 3.51595 3.65304 3.82106 4.05164 4.22248 4.33972 4.34915 4.51009 4.53716 4.67325 4.70348 4.78230 4.82876 4.85421 4.92619 4.99709 5.02087 5.02939 5.12415 5.23375 5.30843 5.47016 5.64593 5.81969 6.01991 6.25505 6.58196 6.62820 6.76830 7.23366 7.50743 8.82338 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.005096 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.293797 B = 5493.573657 C = 5964.563521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.224 3.776 4 C -0.531 4.531 5 H 0.033 0.967 6 C 0.013 3.987 7 N -0.944 5.944 8 Si 0.943 3.057 9 H -0.249 1.249 10 H -0.284 1.284 11 H -0.261 1.261 12 C 0.491 3.509 13 O -0.582 6.582 14 C 0.045 3.955 15 N -0.532 5.532 16 C 0.032 3.968 17 C -0.106 4.106 18 C 0.028 3.972 19 C -0.134 4.134 20 C 0.250 3.750 21 N -0.495 5.495 22 C 0.050 3.950 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.013 0.987 28 H 0.268 0.732 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.977 -17.758 -2.639 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.342 5.342 3 C 0.101 3.899 4 C -0.569 4.569 5 H 0.051 0.949 6 C -0.185 4.185 7 N -0.584 5.584 8 Si 0.766 3.234 9 H -0.173 1.173 10 H -0.209 1.209 11 H -0.186 1.186 12 C 0.280 3.720 13 O -0.462 6.462 14 C -0.086 4.086 15 N -0.257 5.257 16 C -0.095 4.095 17 C -0.144 4.144 18 C 0.024 3.976 19 C -0.192 4.192 20 C -0.068 4.068 21 N -0.171 5.171 22 C -0.079 4.079 23 H 0.097 0.903 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.149 0.851 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.568 -17.901 -3.967 20.682 hybrid contribution 0.124 1.335 0.589 1.464 sum -9.444 -16.567 -3.378 19.366 Atomic orbital electron populations 1.22004 0.77420 1.04181 1.02978 1.47971 1.08515 1.05785 1.71933 1.19280 0.92542 0.82752 0.95324 1.21539 1.36511 1.06541 0.92359 0.94869 1.25781 0.95395 0.98994 0.98337 1.70033 1.42873 1.24450 1.21051 0.85783 0.78862 0.79142 0.79612 1.17326 1.20932 1.18560 1.21342 0.88021 0.86528 0.76106 1.90644 1.16545 1.87771 1.51221 1.22234 0.93756 0.86969 1.05597 1.64501 1.23420 1.02402 1.35400 1.23086 0.97353 0.87882 1.01153 1.22634 0.93461 0.97227 1.01124 1.19361 0.86983 0.96822 0.94469 1.21859 1.04153 1.03680 0.89497 1.29303 0.93743 0.91291 0.92415 1.81086 1.13459 1.11084 1.11482 1.23310 0.98541 0.94586 0.91451 0.90334 0.88751 0.91695 0.93567 0.96865 0.92335 0.88847 0.85065 0.89839 0.89457 0.85476 0.89662 0.89442 0.93029 0.87808 0.92501 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 10.26 127.77 1.31 3.26 16 2 N -0.61 -23.78 2.86 -851.13 -2.43 -26.21 16 3 C 0.22 10.90 4.23 85.64 0.36 11.26 16 4 C -0.53 -30.93 9.94 25.60 0.25 -30.68 16 5 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 6 C 0.01 0.77 5.47 84.66 0.46 1.23 16 7 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 8 Si 0.94 44.93 27.47 68.60 1.88 46.81 16 9 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 12 C 0.49 19.15 7.31 87.66 0.64 19.79 16 13 O -0.58 -29.36 13.87 -3.03 -0.04 -29.40 16 14 C 0.04 1.10 4.03 85.56 0.35 1.45 16 15 N -0.53 -13.64 5.06 -887.58 -4.49 -18.13 16 16 C 0.03 0.47 6.70 86.45 0.58 1.05 16 17 C -0.11 -1.30 6.05 31.48 0.19 -1.11 16 18 C 0.03 0.57 0.89 -52.78 -0.05 0.53 16 19 C -0.13 -1.98 8.46 71.98 0.61 -1.37 16 20 C 0.25 7.34 13.82 89.46 1.24 8.58 16 21 N -0.50 -17.75 18.53 19.98 0.37 -17.38 16 22 C 0.05 1.39 4.46 86.65 0.39 1.78 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.09 1.73 6.28 -2.39 -0.01 1.71 16 25 H 0.06 1.82 8.07 -2.39 -0.02 1.80 16 26 H 0.05 2.05 7.50 -2.39 -0.02 2.03 16 27 H 0.01 0.72 6.48 -2.38 -0.02 0.70 16 28 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.09 1.72 6.92 -2.39 -0.02 1.70 16 30 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.08 0.74 7.68 -2.39 -0.02 0.73 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.13 0.66 7.85 -2.39 -0.02 0.64 16 34 H 0.08 1.00 7.85 -2.39 -0.02 0.98 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.04 8.13 -2.38 -0.02 1.02 16 38 H 0.06 2.24 6.32 -2.39 -0.02 2.23 16 39 H 0.07 1.84 7.90 -2.39 -0.02 1.82 16 Total: -1.00 -85.53 322.15 2.91 -82.63 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 0.98 Total: 4.98 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.33 Total: 15.76 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -6.25 Total: -120.79 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.04 Total: -29.40 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -85.53 2.91 -82.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693959479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.221 kcal (2) G-P(sol) polarization free energy of solvation -85.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds