Wall clock time and date at job start Mon Mar 30 2020 04:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00001 * 2 1 4 4 C 1.53004 * 109.47051 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47351 * 64.99906 * 4 3 2 6 6 C 1.36934 * 120.00115 * 270.00394 * 5 4 3 7 7 H 1.08002 * 120.00617 * 142.43295 * 6 5 4 8 8 C 1.38817 * 119.99976 * 322.42938 * 6 5 4 9 9 N 1.31614 * 120.00406 * 158.17177 * 8 6 5 10 10 Si 1.86798 * 119.99732 * 338.17233 * 8 6 5 11 11 H 1.48505 * 109.47357 * 95.30606 * 10 8 6 12 12 H 1.48504 * 109.47090 * 215.30744 * 10 8 6 13 13 H 1.48508 * 109.47403 * 335.30580 * 10 8 6 14 14 C 1.46498 * 120.00069 * 89.99658 * 5 4 3 15 15 C 1.50700 * 109.46782 * 94.49501 * 14 5 4 16 16 N 1.31795 * 119.12552 * 264.95414 * 15 14 5 17 17 C 1.32340 * 120.81956 * 179.76134 * 16 15 14 18 18 C 1.50695 * 120.44756 * 180.23315 * 17 16 15 19 19 C 1.38594 * 119.10097 * 0.50550 * 17 16 15 20 20 C 1.38593 * 118.40209 * 359.75081 * 19 17 16 21 21 C 1.50706 * 120.44681 * 179.97438 * 20 19 17 22 22 N 1.31804 * 119.12312 * 85.22629 * 15 14 5 23 23 H 1.08998 * 109.47133 * 299.99797 * 1 2 3 24 24 H 1.08999 * 109.47054 * 59.99912 * 1 2 3 25 25 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46862 * 60.00106 * 3 2 1 27 27 H 1.08998 * 109.47208 * 300.00128 * 3 2 1 28 28 H 1.08998 * 109.46596 * 304.99645 * 4 3 2 29 29 H 1.08999 * 109.46917 * 185.00130 * 4 3 2 30 30 H 0.97004 * 120.00283 * 180.02562 * 9 8 6 31 31 H 1.09006 * 109.47124 * 334.50027 * 14 5 4 32 32 H 1.08997 * 109.47230 * 214.49354 * 14 5 4 33 33 H 1.08993 * 109.47392 * 270.27180 * 18 17 16 34 34 H 1.09001 * 109.47036 * 30.27576 * 18 17 16 35 35 H 1.09005 * 109.47174 * 150.27278 * 18 17 16 36 36 H 1.08006 * 120.79775 * 179.77796 * 19 17 16 37 37 H 1.08995 * 109.46727 * 270.01955 * 21 20 19 38 38 H 1.08995 * 109.47314 * 30.02509 * 21 20 19 39 39 H 1.09005 * 109.46892 * 150.02307 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8216 -1.3084 -2.2474 8 6 4.5733 -1.5198 -0.2518 9 7 4.3015 -2.8032 -0.1454 10 14 5.6002 -0.6710 1.0575 11 1 4.7233 -0.2534 2.1809 12 1 6.6355 -1.6096 1.5602 13 1 6.2583 0.5248 0.4724 14 6 4.2864 1.4006 -2.4148 15 6 5.7651 1.6896 -2.4447 16 7 6.2109 2.8088 -1.9101 17 6 7.5032 3.0941 -1.9136 18 6 8.0043 4.3738 -1.2953 19 6 8.3887 2.2028 -2.4986 20 6 7.8817 1.0392 -3.0550 21 6 8.8030 0.0382 -3.7035 22 7 6.5776 0.8190 -3.0096 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8514 0.5683 0.8410 29 1 3.9786 2.1765 0.0889 30 1 4.6342 -3.3083 0.6130 31 1 3.7343 2.3380 -2.3459 32 1 4.0001 0.8764 -3.3265 33 1 8.0125 5.1621 -2.0479 34 1 7.3479 4.6620 -0.4742 35 1 9.0152 4.2227 -0.9164 36 1 9.4485 2.4099 -2.5200 37 1 8.9124 0.2774 -4.7613 38 1 9.7788 0.0758 -3.2196 39 1 8.3838 -0.9625 -3.5988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700503435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:59 Heat of formation + Delta-G solvation = 3.245008 kcal Electronic energy + Delta-G solvation = -20785.224445 eV Core-core repulsion = 17728.265709 eV Total energy + Delta-G solvation = -3056.958736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.92163 -39.00553 -37.36041 -35.60824 -34.54183 -33.51166 -30.89630 -30.18352 -28.78794 -28.10535 -27.11941 -25.01315 -23.73109 -22.52889 -21.94790 -18.88554 -18.47177 -17.69984 -17.18024 -16.64155 -16.54312 -16.16362 -16.13319 -15.59842 -15.33135 -14.80122 -14.62765 -14.27853 -14.05444 -14.01732 -13.63296 -13.30979 -13.26071 -13.03415 -12.98251 -12.94410 -12.55917 -12.35066 -12.18546 -11.85193 -11.66069 -11.46153 -11.12413 -10.64881 -10.35133 -10.15185 -10.04200 -8.87144 -8.14050 -5.49263 0.05571 0.28025 1.18383 1.26849 1.35727 2.38735 2.73269 3.07178 3.13716 3.17967 3.29251 3.53551 3.60157 4.16963 4.22164 4.30400 4.37705 4.43236 4.49634 4.54143 4.59633 4.60276 4.65732 4.69097 4.71261 4.74514 4.81194 4.85887 4.91248 5.02578 5.03555 5.07811 5.18284 5.68528 5.96656 6.21199 6.30811 6.59577 6.96462 7.39326 7.63042 8.01169 9.06794 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.007373 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.326755 B = 3796.549720 C = 4296.566410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.053 3.947 4 C 0.130 3.870 5 N -0.590 5.590 6 C -0.208 4.208 7 H 0.043 0.957 8 C -0.005 4.005 9 N -0.943 5.943 10 Si 0.934 3.066 11 H -0.277 1.277 12 H -0.314 1.314 13 H -0.284 1.284 14 C 0.210 3.790 15 C 0.301 3.699 16 N -0.543 5.543 17 C 0.150 3.850 18 C -0.095 4.095 19 C -0.242 4.242 20 C 0.147 3.853 21 C -0.099 4.099 22 N -0.540 5.540 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.081 0.919 30 H 0.257 0.743 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.179 0.821 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 15.263 -2.999 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C -0.025 4.025 4 C 0.005 3.995 5 N -0.312 5.312 6 C -0.339 4.339 7 H 0.061 0.939 8 C -0.201 4.201 9 N -0.588 5.588 10 Si 0.766 3.234 11 H -0.204 1.204 12 H -0.243 1.243 13 H -0.210 1.210 14 C 0.082 3.918 15 C 0.032 3.968 16 N -0.260 5.260 17 C 0.004 3.996 18 C -0.152 4.152 19 C -0.264 4.264 20 C 0.001 3.999 21 C -0.156 4.156 22 N -0.257 5.257 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.196 0.804 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.737 14.768 -2.901 15.778 hybrid contribution 1.120 -0.042 0.801 1.378 sum 5.857 14.726 -2.100 15.987 Atomic orbital electron populations 1.22801 0.81154 1.02520 1.00295 1.88223 1.20032 1.28315 1.95265 1.23128 0.94606 0.84657 1.00121 1.21399 0.93005 0.96932 0.88169 1.44163 1.74691 1.02396 1.09909 1.18345 1.34454 0.81106 0.99966 0.93946 1.25749 0.99295 0.95171 0.99895 1.69955 1.47893 1.09234 1.31758 0.86009 0.79372 0.77350 0.80623 1.20441 1.24300 1.21045 1.19942 0.84623 0.95613 0.91622 1.24732 0.99995 0.84490 0.87630 1.68150 1.17372 1.20807 1.19720 1.22522 0.88652 0.97271 0.91202 1.20818 1.02182 0.91003 1.01202 1.22839 1.03670 0.96232 1.03670 1.22493 0.91122 0.94555 0.91723 1.20823 0.97126 0.96073 1.01621 1.68205 1.05365 1.32470 1.19630 0.93077 0.93476 0.90542 0.92062 0.92431 0.95083 0.90082 0.93354 0.88670 0.91461 0.87926 0.90792 0.88079 0.80358 0.87935 0.87783 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.40 -17.86 10.18 -148.98 -1.52 -19.38 16 3 C 0.05 2.02 6.28 71.98 0.45 2.47 16 4 C 0.13 5.73 4.91 86.38 0.42 6.16 16 5 N -0.59 -28.97 2.05 -706.35 -1.45 -30.42 16 6 C -0.21 -12.32 9.42 84.04 0.79 -11.53 16 7 H 0.04 2.81 8.06 -2.91 -0.02 2.79 16 8 C -0.01 -0.32 5.31 84.86 0.45 0.13 16 9 N -0.94 -61.93 13.97 21.65 0.30 -61.63 16 10 Si 0.93 50.77 25.01 68.60 1.72 52.49 16 11 H -0.28 -14.40 6.67 99.48 0.66 -13.73 16 12 H -0.31 -17.27 7.11 99.48 0.71 -16.56 16 13 H -0.28 -15.52 7.11 99.48 0.71 -14.81 16 14 C 0.21 8.88 6.11 85.63 0.52 9.40 16 15 C 0.30 12.83 7.20 138.75 1.00 13.83 16 16 N -0.54 -20.65 10.27 -176.02 -1.81 -22.46 16 17 C 0.15 4.58 6.82 42.57 0.29 4.87 16 18 C -0.10 -1.85 10.22 71.23 0.73 -1.13 16 19 C -0.24 -6.88 9.54 22.44 0.21 -6.67 16 20 C 0.15 5.06 6.82 42.57 0.29 5.35 16 21 C -0.10 -2.55 10.22 71.24 0.73 -1.83 16 22 N -0.54 -23.46 10.27 -176.02 -1.81 -25.27 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.03 1.56 3.22 -2.39 -0.01 1.56 16 29 H 0.08 3.19 8.07 -2.39 -0.02 3.17 16 30 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 31 H 0.10 3.41 8.04 -2.38 -0.02 3.39 16 32 H 0.07 2.92 8.08 -2.39 -0.02 2.90 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.44 8.10 -2.38 -0.02 1.42 16 36 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 39 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -80.25 327.81 3.56 -76.70 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.98 Total: 6.71 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 7.14 Total: 23.25 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -4.76 Total: -139.77 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.52 Total: -19.38 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 1.72 Total: 52.49 kcal Total: -80.25 3.56 -76.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700503435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.942 kcal (2) G-P(sol) polarization free energy of solvation -80.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds